Andreas Tille pushed to branch master at Debian Med / paleomix
Commits: b69c70cd by Andreas Tille at 2018-05-03T12:13:41+02:00 New upstream version 1.2.13.2 - - - - - d62f69e3 by Andreas Tille at 2018-05-03T12:13:55+02:00 Update upstream source from tag 'upstream/1.2.13.2' Update to upstream version '1.2.13.2' with Debian dir 6b1ec91029816a90c53862c3a1e13cda5b68d8d3 - - - - - cdb551f5 by Andreas Tille at 2018-05-03T12:13:55+02:00 New upstream version - - - - - 1d7d7f2b by Andreas Tille at 2018-05-03T12:15:50+02:00 Point Vcs fields to salsa.debian.org - - - - - ca90f19c by Andreas Tille at 2018-05-03T12:15:50+02:00 Standards-Version: 4.1.4 - - - - - fa31afcf by Andreas Tille at 2018-05-03T13:17:16+02:00 For some reason the -Xmx argument will be dropped when constructing the java call. Just drop it from the test as well. - - - - - 30 changed files: - CHANGES.md - MANIFEST.in - README.rst - bin/bam_pipeline - bin/bam_rmdup_collapsed - bin/conv_gtf_to_bed - bin/paleomix - bin/phylo_pipeline - bin/trim_pipeline - debian/changelog - debian/control - + debian/patches/adapt_java_calling_test.patch - debian/patches/avoid_downloading_prerequisites.patch - debian/patches/series - docs/bam_pipeline/filestructure.rst - docs/conf.py - docs/index.rst - misc/setup_bam_pipeline_example.sh - misc/setup_phylo_pipeline_example.sh - misc/skeleton.py - misc/synthesize_reads.py - paleomix/__init__.py - paleomix/atomiccmd/__init__.py - paleomix/atomiccmd/builder.py - paleomix/atomiccmd/command.py - paleomix/atomiccmd/pprint.py - paleomix/atomiccmd/sets.py - paleomix/common/__init__.py - paleomix/common/bamfiles.py - paleomix/common/bedtools.py The diff was not included because it is too large. View it on GitLab: https://salsa.debian.org/med-team/paleomix/compare/d308f95884314f4218040f89700f490c8551b7a5...fa31afcf165faf4970941e0487f37c905d636b39 -- View it on GitLab: https://salsa.debian.org/med-team/paleomix/compare/d308f95884314f4218040f89700f490c8551b7a5...fa31afcf165faf4970941e0487f37c905d636b39 You're receiving this email because of your account on salsa.debian.org.
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