This is an automated email from the git hooks/post-receive script. tille pushed a commit to branch master in repository nanopolish.
commit 08b25faf228f182168bc72be6d26f0c796155efd Author: Andreas Tille <ti...@debian.org> Date: Sat Sep 16 07:34:33 2017 +0200 DEP3 --- debian/changelog | 1 + debian/patches/dontinstalleigen.patch | 10 ++++++---- debian/patches/fprintf_sizet.patch | 16 ++++++++-------- debian/patches/gcc7.patch | 11 +++++++---- debian/patches/write_return_values_ignored.patch | 10 ++++++---- 5 files changed, 28 insertions(+), 20 deletions(-) diff --git a/debian/changelog b/debian/changelog index 9ff8b0e..d95a447 100644 --- a/debian/changelog +++ b/debian/changelog @@ -3,6 +3,7 @@ nanopolish (0.8.1-2) UNRELEASED; urgency=medium * Team upload. * Hack around broken clean target which tries to build dependencies from external sources + * DEP3 -- Andreas Tille <ti...@debian.org> Sat, 16 Sep 2017 07:25:45 +0200 diff --git a/debian/patches/dontinstalleigen.patch b/debian/patches/dontinstalleigen.patch index 3241833..2a8a702 100644 --- a/debian/patches/dontinstalleigen.patch +++ b/debian/patches/dontinstalleigen.patch @@ -1,7 +1,9 @@ -Index: nanopolish/Makefile -=================================================================== ---- nanopolish.orig/Makefile -+++ nanopolish/Makefile +Author: Steffen Moeller +Last-Update: 2017-09-16 02:14:07 +0200 +Description: Use Debian packaged libeigen + +--- a/Makefile ++++ b/Makefile @@ -16,7 +16,7 @@ CXX ?= g++ CC ?= gcc diff --git a/debian/patches/fprintf_sizet.patch b/debian/patches/fprintf_sizet.patch index 869707e..ad0bf61 100644 --- a/debian/patches/fprintf_sizet.patch +++ b/debian/patches/fprintf_sizet.patch @@ -1,7 +1,9 @@ -Index: nanopolish/src/common/nanopolish_variant.cpp -=================================================================== ---- nanopolish.orig/src/common/nanopolish_variant.cpp -+++ nanopolish/src/common/nanopolish_variant.cpp +Author: Steffen Moeller +Last-Update: 2017-09-16 02:14:07 +0200 +Description: Fix format-error issues blamed by gcc-7 + +--- a/src/common/nanopolish_variant.cpp ++++ b/src/common/nanopolish_variant.cpp @@ -175,7 +175,7 @@ void score_variant_group(VariantGroup& v max_r -= 1; @@ -11,10 +13,8 @@ Index: nanopolish/src/common/nanopolish_variant.cpp } // Construct haplotypes (including the base haplotype with no variants) -Index: nanopolish/src/nanopolish_haplotype.cpp -=================================================================== ---- nanopolish.orig/src/nanopolish_haplotype.cpp -+++ nanopolish/src/nanopolish_haplotype.cpp +--- a/src/nanopolish_haplotype.cpp ++++ b/src/nanopolish_haplotype.cpp @@ -169,7 +169,7 @@ size_t Haplotype::_find_derived_index_by void Haplotype::print_debug_info() const diff --git a/debian/patches/gcc7.patch b/debian/patches/gcc7.patch index 104ca19..c972825 100644 --- a/debian/patches/gcc7.patch +++ b/debian/patches/gcc7.patch @@ -1,7 +1,10 @@ -Index: nanopolish/src/common/logger.hpp -=================================================================== ---- nanopolish.orig/src/common/logger.hpp -+++ nanopolish/src/common/logger.hpp +Author: Steffen Moeller +Last-Update: 2017-09-16 02:14:07 +0200 +Bug-Debian: https://bugs.debian.org/853568 +Description: Add missing header file to build with gcc-7 + +--- a/src/common/logger.hpp ++++ b/src/common/logger.hpp @@ -72,6 +72,7 @@ #include <iostream> #include <mutex> diff --git a/debian/patches/write_return_values_ignored.patch b/debian/patches/write_return_values_ignored.patch index be1b66f..d8f1153 100644 --- a/debian/patches/write_return_values_ignored.patch +++ b/debian/patches/write_return_values_ignored.patch @@ -1,7 +1,9 @@ -Index: nanopolish/src/alignment/nanopolish_eventalign.cpp -=================================================================== ---- nanopolish.orig/src/alignment/nanopolish_eventalign.cpp -+++ nanopolish/src/alignment/nanopolish_eventalign.cpp +Author: Steffen Moeller +Last-Updated: 2017-09-16 02:14:07 +0200 +Description: Do not ignore return values of samtool functions + +--- a/src/alignment/nanopolish_eventalign.cpp ++++ b/src/alignment/nanopolish_eventalign.cpp @@ -221,7 +221,7 @@ void emit_tsv_header(FILE* fp) void emit_sam_header(samFile* fp, const bam_hdr_t* hdr) -- Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/nanopolish.git _______________________________________________ debian-med-commit mailing list debian-med-commit@lists.alioth.debian.org http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit