This is an automated email from the git hooks/post-receive script. tille pushed a commit to branch master in repository r-bioc-phyloseq.
commit 5c2bb7de00964e9655ab278a5c674bb64bea9d1a Author: Andreas Tille <ti...@debian.org> Date: Sat Aug 27 09:23:24 2016 +0000 Update packaging --- debian/README.test | 8 ++++++++ debian/changelog | 2 +- debian/control | 18 ++++++++++++++---- debian/docs | 3 +++ debian/tests/control | 3 +++ debian/tests/run-unit-test | 13 +++++++++++++ 6 files changed, 42 insertions(+), 5 deletions(-) diff --git a/debian/README.test b/debian/README.test new file mode 100644 index 0000000..53fb4d7 --- /dev/null +++ b/debian/README.test @@ -0,0 +1,8 @@ +Notes on how this package can be tested. +──────────────────────────────────────── + +This package can be tested by running the provided test: + + sh ./run-unit-test + +in order to confirm its integrity. diff --git a/debian/changelog b/debian/changelog index 06a9db2..d96e971 100644 --- a/debian/changelog +++ b/debian/changelog @@ -1,6 +1,6 @@ r-bioc-phyloseq (1.16.2-1) UNRELEASED; urgency=low * Initial release (closes: #???) - TODO: https://bioconductor.org/packages/release/bioc/html/biomformat.html + TODO: r-bioc-biomformat #835579 -- Andreas Tille <ti...@debian.org> Mon, 22 Aug 2016 22:15:51 +0200 diff --git a/debian/control b/debian/control index 9ae37fc..f695292 100644 --- a/debian/control +++ b/debian/control @@ -8,6 +8,7 @@ Build-Depends: debhelper (>= 9), r-base-dev, r-bioc-biobase, r-bioc-biostrings, + r-bioc-biomformat, r-bioc-multtest, r-cran-ade4, r-cran-ape, @@ -15,9 +16,7 @@ Build-Depends: debhelper (>= 9), r-cran-foreach, r-cran-ggplot2, r-cran-igraph, - r-cran-plyr, - r-cran-vegan, -# r-bioc-biomformat, + r-cran-vegan Standards-Version: 3.9.8 Vcs-Browser: https://anonscm.debian.org/viewvc/debian-med/trunk/packages/R/r-bioc-phyloseq/trunk/ Vcs-Svn: svn://anonscm.debian.org/debian-med/trunk/packages/R/r-bioc-phyloseq/trunk/ @@ -26,7 +25,18 @@ Homepage: http://bioconductor.org/packages/release/bioc/html/phyloseq.html Package: r-bioc-phyloseq Architecture: all Depends: ${R:Depends}, - ${misc:Depends} + ${misc:Depends}, + r-bioc-biobase, + r-bioc-biostrings, + r-bioc-biomformat, + r-bioc-multtest, + r-cran-ade4, + r-cran-ape, + r-cran-data.table, + r-cran-foreach, + r-cran-ggplot2, + r-cran-igraph, + r-cran-vegan Description: GNU R handling and analysis of high-throughput microbiome census data The Bioconductor module phyloseq provides a set of classes and tools to facilitate the import, storage, analysis, and graphical display of diff --git a/debian/docs b/debian/docs new file mode 100644 index 0000000..960011c --- /dev/null +++ b/debian/docs @@ -0,0 +1,3 @@ +tests +debian/README.test +debian/tests/run-unit-test diff --git a/debian/tests/control b/debian/tests/control new file mode 100644 index 0000000..b044b0c --- /dev/null +++ b/debian/tests/control @@ -0,0 +1,3 @@ +Tests: run-unit-test +Depends: @, r-cran-testthat +Restrictions: allow-stderr diff --git a/debian/tests/run-unit-test b/debian/tests/run-unit-test new file mode 100644 index 0000000..b7ac9a9 --- /dev/null +++ b/debian/tests/run-unit-test @@ -0,0 +1,13 @@ +#!/bin/sh -e + +oname=phyloseq +pkg=r-bioc-`echo $oname | tr '[A-Z]' '[a-z]'` + +if [ "$ADTTMP" = "" ] ; then + ADTTMP=`mktemp -d /tmp/${pkg}-test.XXXXXX` + trap "rm -rf $ADTTMP" 0 INT QUIT ABRT PIPE TERM +fi +cd $ADTTMP +cp -a /usr/share/doc/${pkg}/tests/* $ADTTMP +LC_ALL=C R --no-save < testthat-phyloseq.R +rm -fr $ADTTMP/* -- Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/r-bioc-phyloseq.git _______________________________________________ debian-med-commit mailing list debian-med-commit@lists.alioth.debian.org http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit