This is an automated email from the git hooks/post-receive script. tille pushed a commit to branch master in repository rapmap.
commit ce74074ed6422541de1046ed5fdf3b407799bf45 Merge: 4a005ef 5fb69ea Author: Andreas Tille <ti...@debian.org> Date: Sat Oct 15 15:33:42 2016 +0200 Merge tag 'upstream/0.4.0+dfsg' Upstream version 0.4.0+dfsg CMakeLists.txt | 58 +- License.md | 676 ++++ README.md | 60 + include/BooMap.hpp | 60 +- include/BooPHF.hpp | 26 +- include/FastxParser.hpp | 150 + include/FrugalBooMap.hpp | 323 ++ include/HitManager.hpp | 22 + include/IndexHeader.hpp | 21 + include/JFRaw.hpp | 21 + include/PairAlignmentFormatter.hpp | 21 + include/RapMapConfig.hpp | 27 +- include/RapMapFileSystem.hpp | 21 + include/RapMapIndex.hpp | 21 + include/RapMapSAIndex.hpp | 25 +- include/RapMapUtils.hpp | 144 +- include/SACollector.hpp | 1283 ++++---- include/SASearcher.hpp | 21 + include/ScopedTimer.hpp | 30 +- include/SingleAlignmentFormatter.hpp | 21 + include/SparseHashSerializer.hpp | 51 + include/SpinLock.hpp | 21 + include/concurrentqueue.h | 3621 ++++++++++++++++++++++ include/sparsepp.h | 5622 ++++++++++++++++++++++++++++++++++ scripts/RunRapMap.sh | 29 + scripts/add-header.sh | 33 + scripts/compile.sh | 2 +- src/CMakeLists.txt | 50 +- src/FastxParser.cpp | 306 ++ src/HitManager.cpp | 55 +- src/RapMap.cpp | 21 + src/RapMapFileSystem.cpp | 21 + src/RapMapIndex.cpp | 21 + src/RapMapIndexer.cpp | 58 +- src/RapMapMapper.cpp | 105 +- src/RapMapSAIndex.cpp | 112 +- src/RapMapSAIndexer.cpp | 177 +- src/RapMapSAMapper.cpp | 371 ++- src/RapMapUtils.cpp | 176 +- 39 files changed, 12822 insertions(+), 1061 deletions(-) -- Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/rapmap.git _______________________________________________ debian-med-commit mailing list debian-med-commit@lists.alioth.debian.org http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit