This is an automated email from the git hooks/post-receive script. tille pushed a change to branch master in repository vsearch.
from 6aa93f1 Drop libssl-dev Build-Depends new 38304cc New upstream version 2.4.3 new a62b050 Merge tag 'upstream/2.4.3' new 27a5177 New upstream version new b1f1d1f Refresh patches, upload to unstable The 4 revisions listed above as "new" are entirely new to this repository and will be described in separate emails. The revisions listed as "adds" were already present in the repository and have only been added to this reference. Summary of changes: .gitignore | 2 + LICENSE.txt | 2 +- README.md | 62 +- configure.ac | 12 +- debian/changelog | 5 +- debian/patches/compilerflags.patch | 2 +- debian/patches/sysconf_memory_sizing.patch | 6 +- man/vsearch.1 | 64 +- src/Makefile.am | 36 +- src/abundance.cc | 20 +- src/abundance.h | 6 +- src/align.cc | 100 +-- src/align.h | 42 +- src/align_simd.cc | 963 ++++++++++++++++++++++------- src/align_simd.h | 2 +- src/allpairs.cc | 91 +-- src/allpairs.h | 2 +- src/arch.cc | 158 ++++- src/arch.h | 13 +- src/bitmap.cc | 6 +- src/bitmap.h | 2 +- src/chimera.cc | 110 ++-- src/chimera.h | 2 +- src/cluster.cc | 96 +-- src/cluster.h | 2 +- src/cpu.cc | 49 +- src/cpu.h | 8 +- src/db.cc | 60 +- src/db.h | 24 +- src/dbhash.cc | 42 +- src/dbhash.h | 24 +- src/dbindex.cc | 24 +- src/dbindex.h | 6 +- src/derep.cc | 136 ++-- src/derep.h | 2 +- src/dynlibs.cc | 73 ++- src/dynlibs.h | 10 +- src/eestats.cc | 82 +-- src/eestats.h | 2 +- src/fasta.cc | 54 +- src/fasta.h | 34 +- src/fastq.cc | 66 +- src/fastq.h | 20 +- src/fastqops.cc | 216 +++---- src/fastqops.h | 2 +- src/fastx.cc | 40 +- src/fastx.h | 43 +- src/linmemalign.cc | 156 ++--- src/linmemalign.h | 100 +-- src/maps.cc | 2 +- src/maps.h | 2 +- src/mask.cc | 10 +- src/mask.h | 2 +- src/mergepairs.cc | 177 +++--- src/mergepairs.h | 2 +- src/minheap.cc | 8 +- src/minheap.h | 3 +- src/msa.cc | 26 +- src/msa.h | 4 +- src/otutable.cc | 48 +- src/otutable.h | 4 +- src/rerep.cc | 14 +- src/rerep.h | 2 +- src/results.cc | 83 +-- src/results.h | 14 +- src/search.cc | 71 ++- src/search.h | 2 +- src/searchcore.cc | 42 +- src/searchcore.h | 2 +- src/searchexact.cc | 79 +-- src/searchexact.h | 2 +- src/showalign.cc | 64 +- src/showalign.h | 12 +- src/shuffle.cc | 6 +- src/shuffle.h | 2 +- src/sortbylength.cc | 4 +- src/sortbylength.h | 2 +- src/sortbysize.cc | 6 +- src/sortbysize.h | 2 +- src/subsample.cc | 26 +- src/subsample.h | 2 +- src/unique.cc | 40 +- src/unique.h | 2 +- src/userfields.cc | 6 +- src/userfields.h | 2 +- src/util.cc | 134 ++-- src/util.h | 20 +- src/vsearch.cc | 203 +++--- src/vsearch.h | 218 ++++--- src/xstring.h | 2 +- test/unclassified.sh | 70 +++ 91 files changed, 2695 insertions(+), 1806 deletions(-) -- Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/vsearch.git _______________________________________________ debian-med-commit mailing list debian-med-commit@lists.alioth.debian.org http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit