Author: tille
Date: 2015-02-12 13:16:14 +0000 (Thu, 12 Feb 2015)
New Revision: 18763
Added:
trunk/packages/python-miso/trunk/debian/bin/
trunk/packages/python-miso/trunk/debian/bin/sam_to_bam
Modified:
trunk/packages/python-miso/trunk/debian/control
trunk/packages/python-miso/trunk/debian/rules
Log:
Package builds including test suite (after doing some trick :-))
Added: trunk/packages/python-miso/trunk/debian/bin/sam_to_bam
===================================================================
--- trunk/packages/python-miso/trunk/debian/bin/sam_to_bam
(rev 0)
+++ trunk/packages/python-miso/trunk/debian/bin/sam_to_bam 2015-02-12
13:16:14 UTC (rev 18763)
@@ -0,0 +1,2 @@
+#!/bin/sh
+python misopy/sam_to_bam.py $@
Property changes on: trunk/packages/python-miso/trunk/debian/bin/sam_to_bam
___________________________________________________________________
Added: svn:executable
+ *
Modified: trunk/packages/python-miso/trunk/debian/control
===================================================================
--- trunk/packages/python-miso/trunk/debian/control 2015-02-12 10:48:31 UTC
(rev 18762)
+++ trunk/packages/python-miso/trunk/debian/control 2015-02-12 13:16:14 UTC
(rev 18763)
@@ -9,7 +9,8 @@
python-all-dev,
python-setuptools,
python-pysam,
- python-scipy
+ python-scipy,
+ python-matplotlib
Standards-Version: 3.9.6
Vcs-Browser:
http://anonscm.debian.org/viewvc/debian-med/trunk/packages/python-miso/trunk/
Vcs-Svn: svn://anonscm.debian.org/debian-med/trunk/packages/python-miso/trunk/
@@ -20,7 +21,10 @@
Architecture: any
Depends: ${shlibs:Depends},
${python:Depends},
- ${misc:Depends}
+ ${misc:Depends},
+ python-pysam,
+ python-scipy,
+ python-matplotlib
Description: Mixture of Isoforms model for RNA-Seq isoform quantitation
MISO (Mixture of Isoforms) is a probabilistic framework that quantitates
the expression level of alternatively spliced genes from RNA-Seq
Modified: trunk/packages/python-miso/trunk/debian/rules
===================================================================
--- trunk/packages/python-miso/trunk/debian/rules 2015-02-12 10:48:31 UTC
(rev 18762)
+++ trunk/packages/python-miso/trunk/debian/rules 2015-02-12 13:16:14 UTC
(rev 18763)
@@ -6,6 +6,13 @@
%:
dh $@ --with python2 --buildsystem=pybuild
+override_dh_auto_test:
+
+ PATH=$(CURDIR)/debian/bin:$${PATH} \
+ PYBUILD_SYSTEM=custom \
+ PYBUILD_TEST_ARGS="ln -s ../../../../misopy/test-data
{build_dir}/misopy && cd {build_dir} && PYTHONPATH={build_dir} python -m
unittest discover -v" \
+ dh_auto_test --buildsystem=pybuild
+
override_dh_clean:
rm -rf tmp a.out
dh_clean
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