Author: tille
Date: 2011-05-02 14:12:33 +0000 (Mon, 02 May 2011)
New Revision: 6742
Added:
trunk/packages/last-align/trunk/debian/patches/
trunk/packages/last-align/trunk/debian/patches/gcc-4.6.patch
trunk/packages/last-align/trunk/debian/patches/series
Modified:
trunk/packages/last-align/trunk/debian/changelog
trunk/packages/last-align/trunk/debian/rules
Log:
Fix #625084. However the package is currently not buildable because help2man
is not installable in unstable.
Modified: trunk/packages/last-align/trunk/debian/changelog
===================================================================
--- trunk/packages/last-align/trunk/debian/changelog 2011-05-02 13:20:09 UTC
(rev 6741)
+++ trunk/packages/last-align/trunk/debian/changelog 2011-05-02 14:12:33 UTC
(rev 6742)
@@ -1,3 +1,14 @@
+last-align (162-1) UNRELEASED; urgency=low
+
+Tha package remains unreleased because help2man is currently uninstallable in
unstable
+
+ * New upstream version
+ * Standards-Version: 3.9.1 (no changes needed)
+ * debian/patches/gcc-4.6.patch: Fix gcc-4.6 build error
+ Closes: #625084
+
+ -- Andreas Tille <ti...@debian.org> Mon, 02 May 2011 15:29:14 +0200
+
last-align (159-1) unstable; urgency=low
* New upstream version
Added: trunk/packages/last-align/trunk/debian/patches/gcc-4.6.patch
===================================================================
--- trunk/packages/last-align/trunk/debian/patches/gcc-4.6.patch
(rev 0)
+++ trunk/packages/last-align/trunk/debian/patches/gcc-4.6.patch
2011-05-02 14:12:33 UTC (rev 6742)
@@ -0,0 +1,10 @@
+--- last-162.orig/src/XdropAligner.hh
++++ last-162/src/XdropAligner.hh
+@@ -12,6 +12,7 @@
+ #include <vector>
+ #include <cassert>
+ #include <climits> // INT_MAX
++#include <cstddef>
+
+ namespace cbrc{
+
Added: trunk/packages/last-align/trunk/debian/patches/series
===================================================================
--- trunk/packages/last-align/trunk/debian/patches/series
(rev 0)
+++ trunk/packages/last-align/trunk/debian/patches/series 2011-05-02
14:12:33 UTC (rev 6742)
@@ -0,0 +1 @@
+gcc-4.6.patch
Modified: trunk/packages/last-align/trunk/debian/rules
===================================================================
--- trunk/packages/last-align/trunk/debian/rules 2011-05-02 13:20:09 UTC
(rev 6741)
+++ trunk/packages/last-align/trunk/debian/rules 2011-05-02 14:12:33 UTC
(rev 6742)
@@ -42,9 +42,6 @@
help2man --no-info --version-string="$(version)" \
--name="changes the order of the sequences in MAF-format
alignments" \
$(CURDIR)/scripts/maf-swap.py > $(mandir)/maf-swap.1
-# help2man --no-info --version-string="$(version)" \
-# --name="converts MAF-format alignments to a human-friendly
HTML format" \
-# $(CURDIR)/scripts/maf2html.py > $(mandir)/maf2html.1
help2man --no-info --version-string="$(version)" \
--name="Add extra column with mapping probabilities" \
$(CURDIR)/scripts/last-map-probs.py >
$(mandir)/last-map-probs.1
@@ -71,7 +68,3 @@
# This target obtains the latest upstream version and not the latest packaged
version
get-orig-source:
. debian/get-orig-source
-# [ -f ../last-$(DEB_UPSTREAM_VERSION).zip ] || uscan --force-download
-# unzip ../last-$(DEB_UPSTREAM_VERSION).zip -d..
-# mv ../last-$(DEB_UPSTREAM_VERSION) ../last-$(DEB_UPSTREAM_VERSION).orig
-# GZIP="--best --no-name" tar --create --gzip --file
../$(pkg)_$(DEB_UPSTREAM_VERSION).orig.tar.gz
../last-$(DEB_UPSTREAM_VERSION).orig
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