[med-svn] [trinityrnaseq] 02/02: manpage; mark scripts +x

2015-02-12 Thread Michael Crusoe
This is an automated email from the git hooks/post-receive script. misterc-guest pushed a commit to branch master in repository trinityrnaseq. commit 0be291ddbe454eba219bdc0bf774adf84b7a6c6c Author: Michael R. Crusoe mcru...@msu.edu Date: Thu Feb 12 12:00:43 2015 -0500 manpage; mark

[med-svn] [prokka] annotated tag upstream/1.10 created (now 7e017fc)

2015-02-12 Thread Michael Crusoe
This is an automated email from the git hooks/post-receive script. misterc-guest pushed a change to annotated tag upstream/1.10 in repository prokka. at 7e017fc (tag) tagging aac3ce11843631763441040fc9385b42c61c7390 (commit) tagged by Michael R. Crusoe on Thu Feb 12

[med-svn] [prokka] branch upstream created (now aac3ce1)

2015-02-12 Thread Michael Crusoe
This is an automated email from the git hooks/post-receive script. misterc-guest pushed a change to branch upstream in repository prokka. at aac3ce1 Imported Upstream version 1.10 This branch includes the following new commits: new aac3ce1 Imported Upstream version 1.10

[med-svn] [prokka] branch pristine-tar created (now ca6272e)

2015-02-12 Thread Michael Crusoe
This is an automated email from the git hooks/post-receive script. misterc-guest pushed a change to branch pristine-tar in repository prokka. at ca6272e pristine-tar data for prokka_1.10.orig.tar.gz This branch includes the following new commits: new ca6272e pristine-tar

[med-svn] [prokka] 01/01: pristine-tar data for prokka_1.10.orig.tar.gz

2015-02-12 Thread Michael Crusoe
This is an automated email from the git hooks/post-receive script. misterc-guest pushed a commit to branch pristine-tar in repository prokka. commit ca6272e93ca4621b3812291484a00a59ebbf04fa Author: Michael R. Crusoe mcru...@msu.edu Date: Thu Feb 12 09:16:35 2015 -0500 pristine-tar data

[med-svn] [trinityrnaseq] 01/02: don't forget perl depends

2015-02-12 Thread Michael Crusoe
This is an automated email from the git hooks/post-receive script. misterc-guest pushed a commit to branch master in repository trinityrnaseq. commit aab6008ede5ff44f73b5ab902d61c65fe84d09b0 Author: Michael R. Crusoe mcru...@msu.edu Date: Thu Feb 12 11:50:12 2015 -0500 don't forget perl

[med-svn] [prokka] branch master created (now e1fcc05)

2015-02-12 Thread Michael Crusoe
This is an automated email from the git hooks/post-receive script. misterc-guest pushed a change to branch master in repository prokka. at e1fcc05 initial debianization This branch includes the following new commits: new aac3ce1 Imported Upstream version 1.10 new

[med-svn] [trinityrnaseq] branch master updated (63e9e1c - 0be291d)

2015-02-12 Thread Michael Crusoe
This is an automated email from the git hooks/post-receive script. misterc-guest pushed a change to branch master in repository trinityrnaseq. from 63e9e1c ship the docs; close ITP; update deps new aab6008 don't forget perl depends new 0be291d manpage; mark scripts

[med-svn] [prokka] branch pristine-tar updated (ca6272e - 9dacd08)

2015-02-12 Thread Michael Crusoe
This is an automated email from the git hooks/post-receive script. misterc-guest pushed a change to branch pristine-tar in repository prokka. from ca6272e pristine-tar data for prokka_1.10.orig.tar.gz new 9dacd08 pristine-tar data for prokka_1.10+dfsg.orig.tar.xz The 1

[med-svn] [prokka] 01/04: watch file proper file exclusion

2015-02-12 Thread Michael Crusoe
This is an automated email from the git hooks/post-receive script. misterc-guest pushed a commit to branch master in repository prokka. commit 93389cf6d4621d533be835cddeda4dc27765dad5 Author: Michael R. Crusoe mcru...@msu.edu Date: Thu Feb 12 13:52:01 2015 -0500 watch file proper file

[med-svn] [prokka] 01/01: pristine-tar data for prokka_1.10+dfsg.orig.tar.xz

2015-02-12 Thread Michael Crusoe
This is an automated email from the git hooks/post-receive script. misterc-guest pushed a commit to branch pristine-tar in repository prokka. commit 9dacd08ba28ed4cb6df9fae0e2aaa54c4d0cee2e Author: Michael R. Crusoe mcru...@msu.edu Date: Thu Feb 12 14:11:05 2015 -0500 pristine-tar data

[med-svn] [prokka] branch master updated (e1fcc05 - 1245292)

2015-02-12 Thread Michael Crusoe
This is an automated email from the git hooks/post-receive script. misterc-guest pushed a change to branch master in repository prokka. from e1fcc05 initial debianization new 1245292 add ITP # The 1 revisions listed above as new are entirely new to this repository and will be

[med-svn] [prokka] branch master updated (1245292 - a5f1b37)

2015-02-12 Thread Michael Crusoe
This is an automated email from the git hooks/post-receive script. misterc-guest pushed a change to branch master in repository prokka. from 1245292 add ITP # new 93389cf watch file proper file exclusion new 1e41103 Imported Upstream version 1.10+dfsg new

[med-svn] [prokka] 03/04: Merge tag 'upstream/1.10+dfsg'

2015-02-12 Thread Michael Crusoe
This is an automated email from the git hooks/post-receive script. misterc-guest pushed a commit to branch master in repository prokka. commit 288cf2dbeb821a1772e9c6cebe4533139002f85b Merge: 93389cf 1e41103 Author: Michael R. Crusoe mcru...@msu.edu Date: Thu Feb 12 14:11:06 2015 -0500

[med-svn] [prokka] 04/04: adding dfsg to version

2015-02-12 Thread Michael Crusoe
This is an automated email from the git hooks/post-receive script. misterc-guest pushed a commit to branch master in repository prokka. commit a5f1b37952b8eacfd27e9eeccbf168e09658fe89 Author: Michael R. Crusoe mcru...@msu.edu Date: Thu Feb 12 14:12:37 2015 -0500 adding dfsg to version ---

[med-svn] [prokka] branch upstream updated (aac3ce1 - 1e41103)

2015-02-12 Thread Michael Crusoe
This is an automated email from the git hooks/post-receive script. misterc-guest pushed a change to branch upstream in repository prokka. from aac3ce1 Imported Upstream version 1.10 new 1e41103 Imported Upstream version 1.10+dfsg The 1 revisions listed above as new are

[med-svn] r18756 - trunk/package_template

2015-02-12 Thread Andreas Tille
Author: tille Date: 2015-02-12 09:55:31 + (Thu, 12 Feb 2015) New Revision: 18756 Modified: trunk/package_template/watch Log: Link reference for explanation Modified: trunk/package_template/watch === ---

[med-svn] [rsem] branch master updated (144ed09 - f7ac6b1)

2015-02-12 Thread Andreas Tille
This is an automated email from the git hooks/post-receive script. tille pushed a change to branch master in repository rsem. from 144ed09 ship docs new 4fe8c95 Package is maintained by Michael R. Crusoe michael.cru...@gmail.com new f7ac6b1 cme fix dpkg-control The

[med-svn] r18754 - trunk/package_template

2015-02-12 Thread Andreas Tille
Author: tille Date: 2015-02-12 08:57:42 + (Thu, 12 Feb 2015) New Revision: 18754 Modified: trunk/package_template/changelog Log: Rather use a hint how to get current date than an ancient date Modified: trunk/package_template/changelog

[med-svn] [khmer] 01/01: Remove the 'module' infix from the CPython extension

2015-02-12 Thread Michael Crusoe
This is an automated email from the git hooks/post-receive script. misterc-guest pushed a commit to branch master in repository khmer. commit cdd3ca1806d23ea004e6cebfda0c7dff10fb7c99 Author: Michael R. Crusoe mcru...@msu.edu Date: Thu Feb 12 05:24:31 2015 -0500 Remove the 'module' infix

[med-svn] [khmer] branch master updated (02fbf64 - cdd3ca1)

2015-02-12 Thread Michael Crusoe
This is an automated email from the git hooks/post-receive script. misterc-guest pushed a change to branch master in repository khmer. from 02fbf64 Upload to unstable new cdd3ca1 Remove the 'module' infix from the CPython extension The 1 revisions listed above as new are

[med-svn] r18762 - trunk/packages/python-miso/trunk/debian

2015-02-12 Thread Andreas Tille
Author: tille Date: 2015-02-12 10:48:31 + (Thu, 12 Feb 2015) New Revision: 18762 Removed: trunk/packages/python-miso/trunk/debian/README.Debian trunk/packages/python-miso/trunk/debian/miso.doc-base.EX Modified: trunk/packages/python-miso/trunk/debian/changelog

[med-svn] [trinityrnaseq] 01/01: While Files-Excluded was perfectly correct I consider it way more readable to specify one excluded item per line

2015-02-12 Thread Andreas Tille
This is an automated email from the git hooks/post-receive script. tille pushed a commit to branch master in repository trinityrnaseq. commit f880f1be2ec460ea9584f2430b088b38a2186268 Author: Andreas Tille ti...@debian.org Date: Thu Feb 12 23:13:56 2015 +0100 While Files-Excluded was

[med-svn] [trinityrnaseq] branch master updated (0be291d - f880f1b)

2015-02-12 Thread Andreas Tille
This is an automated email from the git hooks/post-receive script. tille pushed a change to branch master in repository trinityrnaseq. from 0be291d manpage; mark scripts +x new f880f1b While Files-Excluded was perfectly correct I consider it way more readable to specify one

[med-svn] [trinityrnaseq] 01/01: Imported Upstream version 2.0.3+dfsg

2015-02-12 Thread Michael Crusoe
This is an automated email from the git hooks/post-receive script. misterc-guest pushed a commit to branch upstream in repository trinityrnaseq. commit 1a1969db83df2c2eeb43eeebc947025608a5a1e7 Author: Michael R. Crusoe mcru...@msu.edu Date: Thu Feb 12 13:59:08 2015 -0500 Imported Upstream

[med-svn] [trinityrnaseq] 01/01: pristine-tar data for trinityrnaseq_2.0.3+dfsg.orig.tar.xz

2015-02-12 Thread Michael Crusoe
This is an automated email from the git hooks/post-receive script. misterc-guest pushed a commit to branch pristine-tar in repository trinityrnaseq. commit 201505c016e8fc66224f26b0f15b7a0ade766f8b Author: Michael R. Crusoe mcru...@msu.edu Date: Thu Feb 12 14:00:56 2015 -0500 pristine-tar

[med-svn] [trinityrnaseq] branch pristine-tar updated (c5592a7 - 201505c)

2015-02-12 Thread Michael Crusoe
This is an automated email from the git hooks/post-receive script. misterc-guest pushed a change to branch pristine-tar in repository trinityrnaseq. from c5592a7 pristine-tar data for trinityrnaseq_2.0.2.orig.tar.gz new 201505c pristine-tar data for

[med-svn] [trinityrnaseq] branch upstream updated (f018d02 - 1a1969d)

2015-02-12 Thread Michael Crusoe
This is an automated email from the git hooks/post-receive script. misterc-guest pushed a change to branch upstream in repository trinityrnaseq. from f018d02 Imported Upstream version 2.0.2 new 1a1969d Imported Upstream version 2.0.3+dfsg The 1 revisions listed above as new

[med-svn] [trinityrnaseq] 01/01: We are excluding files so flag this by adding +dfsg to the version

2015-02-12 Thread Andreas Tille
This is an automated email from the git hooks/post-receive script. tille pushed a commit to branch master in repository trinityrnaseq. commit 9166bf74235b0e0b2ddda602aec191455d02fb51 Author: Andreas Tille ti...@debian.org Date: Thu Feb 12 23:34:50 2015 +0100 We are excluding files so flag

[med-svn] [trinityrnaseq] branch master updated (cb9cc22 - 9166bf7)

2015-02-12 Thread Andreas Tille
This is an automated email from the git hooks/post-receive script. tille pushed a change to branch master in repository trinityrnaseq. from cb9cc22 bump version clarify copyrights new 9166bf7 We are excluding files so flag this by adding +dfsg to the version The 1 revisions

[med-svn] [rsem] 02/02: correct citation

2015-02-12 Thread Michael Crusoe
This is an automated email from the git hooks/post-receive script. misterc-guest pushed a commit to branch master in repository rsem. commit 46a5b17d5918eefaf5e5b34c016824f061a2dd68 Author: Michael R. Crusoe mcru...@msu.edu Date: Thu Feb 12 17:45:03 2015 -0500 correct citation ---

[med-svn] [express] branch master updated (c940a22 - 61a4c7f)

2015-02-12 Thread Andreas Tille
This is an automated email from the git hooks/post-receive script. tille pushed a change to branch master in repository express. from c940a22 cme fix dpkg-control new 61a4c7f Add citation The 1 revisions listed above as new are entirely new to this repository and will be

[med-svn] [trinityrnaseq] 01/01: In some cases help2man has poor results - here it was the case. So I did some (boring) manual editing

2015-02-12 Thread Andreas Tille
This is an automated email from the git hooks/post-receive script. tille pushed a commit to branch master in repository trinityrnaseq. commit 8e8f11d75f692fb769204e8423f775ec8944ab8c Author: Andreas Tille ti...@debian.org Date: Thu Feb 12 23:28:37 2015 +0100 In some cases help2man has

[med-svn] [rsem] branch master updated (eff8682 - 46a5b17)

2015-02-12 Thread Michael Crusoe
This is an automated email from the git hooks/post-receive script. misterc-guest pushed a change to branch master in repository rsem. from eff8682 Add reference new c971ab4 Revert Add reference new 46a5b17 correct citation The 2 revisions listed above as new are

[med-svn] [rsem] 01/02: Revert Add reference

2015-02-12 Thread Michael Crusoe
This is an automated email from the git hooks/post-receive script. misterc-guest pushed a commit to branch master in repository rsem. commit c971ab4e810fc8d6fd115e48c7bc744b50304b95 Author: Michael R. Crusoe mcru...@msu.edu Date: Thu Feb 12 17:40:04 2015 -0500 Revert Add reference

[med-svn] [express] 01/01: Add citation

2015-02-12 Thread Andreas Tille
This is an automated email from the git hooks/post-receive script. tille pushed a commit to branch master in repository express. commit 61a4c7f7dbe37ddfd0344a035fbb0ae0ee133695 Author: Andreas Tille ti...@debian.org Date: Thu Feb 12 21:52:26 2015 +0100 Add citation ---

[med-svn] [trinityrnaseq] 03/03: bump version clarify copyrights

2015-02-12 Thread Michael Crusoe
This is an automated email from the git hooks/post-receive script. misterc-guest pushed a commit to branch master in repository trinityrnaseq. commit cb9cc222e4afa4ac775d08cb6f753ff99a1c6125 Author: Michael R. Crusoe mcru...@msu.edu Date: Thu Feb 12 14:04:52 2015 -0500 bump version

[med-svn] [trinityrnaseq] 02/03: Imported Upstream version 2.0.3+dfsg

2015-02-12 Thread Michael Crusoe
This is an automated email from the git hooks/post-receive script. misterc-guest pushed a commit to branch master in repository trinityrnaseq. commit e279efe79d0c2deadfee8a8ee7d43d7fec6d8e92 Author: Michael R. Crusoe mcru...@msu.edu Date: Thu Feb 12 13:59:08 2015 -0500 Imported Upstream

[med-svn] [trinityrnaseq] 01/03: add watch; properly exclude files

2015-02-12 Thread Michael Crusoe
This is an automated email from the git hooks/post-receive script. misterc-guest pushed a commit to branch master in repository trinityrnaseq. commit 9dec0c1a4b0f315cf0121deb334fa097e3d3d94b Author: Michael R. Crusoe mcru...@msu.edu Date: Thu Feb 12 13:49:37 2015 -0500 add watch; properly

[med-svn] [trinityrnaseq] branch master updated (8e8f11d - cb9cc22)

2015-02-12 Thread Michael Crusoe
This is an automated email from the git hooks/post-receive script. misterc-guest pushed a change to branch master in repository trinityrnaseq. from 8e8f11d In some cases help2man has poor results - here it was the case. So I did some (boring) manual editing new 9dec0c1 add

[med-svn] r18758 - in trunk/packages/miso/trunk/debian: . upstream

2015-02-12 Thread Andreas Tille
Author: tille Date: 2015-02-12 10:02:15 + (Thu, 12 Feb 2015) New Revision: 18758 Added: trunk/packages/miso/trunk/debian/upstream/ trunk/packages/miso/trunk/debian/upstream/metadata Log: Add reference Added: trunk/packages/miso/trunk/debian/upstream/metadata

[med-svn] r18759 - trunk/packages/gnumed-server/tags

2015-02-12 Thread Andreas Tille
Author: tille Date: 2015-02-12 10:03:29 + (Thu, 12 Feb 2015) New Revision: 18759 Added: trunk/packages/gnumed-server/tags/20.3-1/ Log: Tagged 20.3-1 ___ debian-med-commit mailing list debian-med-commit@lists.alioth.debian.org

[med-svn] r18760 - trunk/packages

2015-02-12 Thread Andreas Tille
Author: tille Date: 2015-02-12 10:03:49 + (Thu, 12 Feb 2015) New Revision: 18760 Added: trunk/packages/python-miso/ Removed: trunk/packages/miso/ Log: Moved to python-miso ___ debian-med-commit mailing list

[med-svn] [express] 01/02: Package maintained by Michael R. Crusoe michael.cru...@gmail.com

2015-02-12 Thread Andreas Tille
This is an automated email from the git hooks/post-receive script. tille pushed a commit to branch master in repository express. commit b8d8d606350534541b5159946399508edacc72ab Author: Andreas Tille ti...@debian.org Date: Thu Feb 12 09:21:53 2015 +0100 Package maintained by Michael R.

[med-svn] [rsem] 02/02: cme fix dpkg-control

2015-02-12 Thread Andreas Tille
This is an automated email from the git hooks/post-receive script. tille pushed a commit to branch master in repository rsem. commit f7ac6b15690c8a2d6af92dd5c123eca2523a1e84 Author: Andreas Tille ti...@debian.org Date: Thu Feb 12 09:25:26 2015 +0100 cme fix dpkg-control ---

[med-svn] [rsem] 01/02: Package is maintained by Michael R. Crusoe michael.cru...@gmail.com

2015-02-12 Thread Andreas Tille
This is an automated email from the git hooks/post-receive script. tille pushed a commit to branch master in repository rsem. commit 4fe8c9585c35260509324c94402ccf83ff61860b Author: Andreas Tille ti...@debian.org Date: Thu Feb 12 09:24:49 2015 +0100 Package is maintained by Michael R.

[med-svn] [express] branch master updated (6511511 - c940a22)

2015-02-12 Thread Andreas Tille
This is an automated email from the git hooks/post-receive script. tille pushed a change to branch master in repository express. from 6511511 add cmake, libz to builddeps new b8d8d60 Package maintained by Michael R. Crusoe michael.cru...@gmail.com new c940a22 cme

[med-svn] [express] 02/02: cme fix dpkg-control

2015-02-12 Thread Andreas Tille
This is an automated email from the git hooks/post-receive script. tille pushed a commit to branch master in repository express. commit c940a22121b4bf2b1da727a636ca97fa5e9d704b Author: Andreas Tille ti...@debian.org Date: Thu Feb 12 09:23:22 2015 +0100 cme fix dpkg-control ---

[med-svn] r18757 - trunk/packages/miso/trunk/debian

2015-02-12 Thread Andreas Tille
Author: tille Date: 2015-02-12 09:56:05 + (Thu, 12 Feb 2015) New Revision: 18757 Added: trunk/packages/miso/trunk/debian/watch Removed: trunk/packages/miso/trunk/debian/watch.ex Log: Add proper watch file Added: trunk/packages/miso/trunk/debian/watch

[med-svn] r18761 - trunk/packages/python-miso/trunk/debian

2015-02-12 Thread Andreas Tille
Author: tille Date: 2015-02-12 10:05:20 + (Thu, 12 Feb 2015) New Revision: 18761 Modified: trunk/packages/python-miso/trunk/debian/control Log: Follow the good practice to name source packages according to binary packages Modified: trunk/packages/python-miso/trunk/debian/control

[med-svn] r18755 - trunk/package_template

2015-02-12 Thread Andreas Tille
Author: tille Date: 2015-02-12 09:54:15 + (Thu, 12 Feb 2015) New Revision: 18755 Modified: trunk/package_template/watch Log: watch line for PyPi repository of Python modules Modified: trunk/package_template/watch === ---

[med-svn] [rsem] branch master updated (f7ac6b1 - eff8682)

2015-02-12 Thread Andreas Tille
This is an automated email from the git hooks/post-receive script. tille pushed a change to branch master in repository rsem. from f7ac6b1 cme fix dpkg-control new eff8682 Add reference The 1 revisions listed above as new are entirely new to this repository and will be

[med-svn] [rsem] 01/01: Add reference

2015-02-12 Thread Andreas Tille
This is an automated email from the git hooks/post-receive script. tille pushed a commit to branch master in repository rsem. commit eff8682bbdcc41acaddcce212483ca1445174aa1 Author: Andreas Tille ti...@debian.org Date: Thu Feb 12 21:46:59 2015 +0100 Add reference ---

[med-svn] [trinityrnaseq] branch master updated (f880f1b - 8e8f11d)

2015-02-12 Thread Andreas Tille
This is an automated email from the git hooks/post-receive script. tille pushed a change to branch master in repository trinityrnaseq. from f880f1b While Files-Excluded was perfectly correct I consider it way more readable to specify one excluded item per line new 8e8f11d In

[med-svn] [Debian Wiki] Update of DebianMed/MoM by AndreasTille

2015-02-12 Thread Debian Wiki
Dear Wiki user, You have subscribed to a wiki page or wiki category on Debian Wiki for change notification. The DebianMed/MoM page has been changed by AndreasTille: https://wiki.debian.org/DebianMed/MoM?action=diffrev1=56rev2=57 Comment: Add Malihe Asemani as MoM for women candidate

[med-svn] r18764 - in trunk/packages/python-miso/trunk/debian: . bin

2015-02-12 Thread Andreas Tille
Author: tille Date: 2015-02-12 14:06:31 + (Thu, 12 Feb 2015) New Revision: 18764 Added: trunk/packages/python-miso/trunk/debian/bin/index_gff trunk/packages/python-miso/trunk/debian/bin/miso Modified: trunk/packages/python-miso/trunk/debian/bin/sam_to_bam

[med-svn] r18765 - trunk/packages/python-miso/trunk/debian

2015-02-12 Thread Andreas Tille
Author: tille Date: 2015-02-12 14:35:38 + (Thu, 12 Feb 2015) New Revision: 18765 Modified: trunk/packages/python-miso/trunk/debian/control trunk/packages/python-miso/trunk/debian/rules Log: Really run any test that is supposed to be run Modified:

[med-svn] r18763 - in trunk/packages/python-miso/trunk/debian: . bin

2015-02-12 Thread Andreas Tille
Author: tille Date: 2015-02-12 13:16:14 + (Thu, 12 Feb 2015) New Revision: 18763 Added: trunk/packages/python-miso/trunk/debian/bin/ trunk/packages/python-miso/trunk/debian/bin/sam_to_bam Modified: trunk/packages/python-miso/trunk/debian/control

[med-svn] r18766 - trunk/packages/volview/trunk/debian

2015-02-12 Thread Andreas Tille
Author: tille Date: 2015-02-12 15:48:29 + (Thu, 12 Feb 2015) New Revision: 18766 Modified: trunk/packages/volview/trunk/debian/changelog Log: Package was removed from Debian as requested by Mathieu Malaterre in #745023 Modified: trunk/packages/volview/trunk/debian/changelog

[med-svn] r18768 - in trunk/packages/orthanc/trunk/debian: . configuration docs patches

2015-02-12 Thread Sebastien Jodogne
Author: jodogne-guest Date: 2015-02-12 16:39:52 + (Thu, 12 Feb 2015) New Revision: 18768 Modified: trunk/packages/orthanc/trunk/debian/changelog trunk/packages/orthanc/trunk/debian/configuration/orthanc.json trunk/packages/orthanc/trunk/debian/docs/Orthanc.1

[med-svn] r18767 - trunk/packages/barrnap-data-nonfree/trunk/debian

2015-02-12 Thread Sascha Steinbiss
Author: sascha-guest Date: 2015-02-12 16:35:23 + (Thu, 12 Feb 2015) New Revision: 18767 Modified: trunk/packages/barrnap-data-nonfree/trunk/debian/control trunk/packages/barrnap-data-nonfree/trunk/debian/copyright Log: extend copyright file for barrnap non-free HMMs Modified: