[med-svn] [trnascan-se] 01/01: pristine-tar data for trnascan-se_1.3.1+dfsg.orig.tar.xz

2015-11-01 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a commit to branch pristine-tar in repository trnascan-se. commit 22c51868668e8d04feab28fdbced6c6e61291dd1 Author: Afif Elghraoui <a...@ghraoui.name> Date: Sun Nov 1 11:14:04 2015 -0800 pristine-ta

[med-svn] [trnascan-se] branch pristine-tar updated (b33ee2d -> 22c5186)

2015-11-01 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a change to branch pristine-tar in repository trnascan-se. from b33ee2d pristine-tar data for trnascan-se_1.3.1.orig.tar.gz new 22c5186 pristine-tar data for trnascan-se_1.3.1+dfsg.orig.tar.xz

[med-svn] [trnascan-se] branch master updated (ee156a5 -> c2c2476)

2015-10-30 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a change to branch master in repository trnascan-se. from ee156a5 Initial packaging new 74fba96 Add patch to use LDFLAGS so that hardening flags are applied new 479b946 Add

[med-svn] [trnascan-se] 07/08: Add manpages for remaining executables based on upstream docs

2015-10-30 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a commit to branch master in repository trnascan-se. commit 72eaaf06d89de18cef2abbf056e7c6f76f87e291 Author: Afif Elghraoui <a...@ghraoui.name> Date: Fri Oct 30 22:53:13 2015 -0700 Add ma

[med-svn] [trnascan-se] 08/08: Add a watch file

2015-10-30 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a commit to branch master in repository trnascan-se. commit c2c24763bfe558665d3a3ba0bf7ed816cb4ad24e Author: Afif Elghraoui <a...@ghraoui.name> Date: Fri Oct 30 22:53:30 2015 -0700 Add a watc

[med-svn] [trnascan-se] 06/08: Add infernal as a suggestion

2015-10-30 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a commit to branch master in repository trnascan-se. commit fc05ba15a862b64606459f77f227b331621f298b Author: Afif Elghraoui <a...@ghraoui.name> Date: Fri Oct 30 22:52:31 2015 -0700 Add in

[med-svn] [trnascan-se] 01/08: Add patch to use LDFLAGS so that hardening flags are applied

2015-10-30 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a commit to branch master in repository trnascan-se. commit 74fba966b50ca242b2da834ad15942476d805dd7 Author: Afif Elghraoui <a...@ghraoui.name> Date: Fri Oct 30 01:34:00 2015 -0700 Add patch

[med-svn] [trnascan-se] 03/08: Add patch to fix manpage errors

2015-10-30 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a commit to branch master in repository trnascan-se. commit 1a8932cebb0e69c1854fce290f57ac704589e77b Author: Afif Elghraoui <a...@ghraoui.name> Date: Fri Oct 30 20:03:23 2015 -0700 Add patch

[med-svn] [trnascan-se] 05/08: Create a separate package for architecture-independent files

2015-10-30 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a commit to branch master in repository trnascan-se. commit 0b8b894a8363a99307721c13749d75a8f7d7cdb4 Author: Afif Elghraoui <a...@ghraoui.name> Date: Fri Oct 30 21:53:05 2015 -0700 Create a se

[med-svn] [trnascan-se] branch master updated (c2c2476 -> c42b883)

2015-10-31 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a change to branch master in repository trnascan-se. from c2c2476 Add a watch file new c42b883 Record ITP number in d/changelog The 1 revisions listed above as "new" are entirely new to this

[med-svn] [artemis] tag debian/16.0.0+dfsg-2 created (now 2670249)

2015-11-04 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a change to tag debian/16.0.0+dfsg-2 in repository artemis. at 2670249 (commit) No new revisions were added by this update. -- Alioth's /usr/local/bin/git-commit-notice on

[med-svn] [artemis] branch master updated (56d5bb4 -> 2670249)

2015-11-04 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a change to branch master in repository artemis. from 56d5bb4 Depend on libcommons-net-java instead of libcommons-net2-java new 2670249 artemis (16.0.0+dfsg-2) unstable; urgency=medium The 1

[med-svn] [artemis] 01/01: artemis (16.0.0+dfsg-2) unstable; urgency=medium

2015-11-04 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a commit to branch master in repository artemis. commit 2670249204361477d57d3676b4c9710519c1b6c4 Author: Afif Elghraoui <a...@ghraoui.name> Date: Wed Nov 4 22:43:37 2015 -0800 artemis (16.0.0+

[med-svn] [artemis] branch master updated (7ef1610 -> 73d1ed4)

2015-11-03 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a change to branch master in repository artemis. from 7ef1610 On a Debian system you actually have received a copy as the next paragraph states - so we can easily avoid the lintian warning new

[med-svn] [artemis] 01/02: Rename artemis.desktop to avoid file name conflict

2015-11-03 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a commit to branch master in repository artemis. commit af2cf1729d9eef6bf20893c6528ed94e2f4e14f2 Author: Afif Elghraoui <a...@ghraoui.name> Date: Tue Nov 3 21:36:28 2015 -0800 Rename artemis.d

[med-svn] [artemis] 02/02: Set new changelog entry

2015-11-03 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a commit to branch master in repository artemis. commit 73d1ed4a89f11478cdfae1a84667e82c81da36d1 Author: Afif Elghraoui <a...@ghraoui.name> Date: Tue Nov 3 21:40:57 2015 -0800 Set new changelog

[med-svn] [bcftools] branch upstream created (now 9a27f71)

2015-11-04 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a change to branch upstream in repository bcftools. at 9a27f71 Imported Upstream version 1.2 This branch includes the following new commits: new 9a27f71 Imported Upstream version 1.2 The

[med-svn] [bcftools] branch master created (now f3ef111)

2015-11-04 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a change to branch master in repository bcftools. at f3ef111 Add d/watch file This branch includes the following new commits: new 9a27f71 Imported Upstream version 1.2 new 2639b24

[med-svn] [bcftools] 02/04: Initial packaging

2015-11-04 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a commit to branch master in repository bcftools. commit 2639b24571d4439ff29f029869ea2b75c59cd799 Author: Afif Elghraoui <a...@ghraoui.name> Date: Tue Nov 3 23:57:20 2015 -0800 Initial pac

[med-svn] [bcftools] annotated tag upstream/1.2 created (now 171b0c4)

2015-11-04 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a change to annotated tag upstream/1.2 in repository bcftools. at 171b0c4 (tag) tagging 9a27f719b68ab89af950442178d83737a1eff47b (commit) tagged by Afif Elghraoui on Tue Nov 3 17:53:42

[med-svn] [bcftools] 01/01: pristine-tar data for bcftools_1.2.orig.tar.gz

2015-11-04 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a commit to branch pristine-tar in repository bcftools. commit de93ced555bb31c02521a80bb08684ff58ed1236 Author: Afif Elghraoui <a...@ghraoui.name> Date: Tue Nov 3 17:53:41 2015 -0800 pristine-ta

[med-svn] [bcftools] 03/04: Add draft copyright file

2015-11-04 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a commit to branch master in repository bcftools. commit 1151c3016adcbcddd01147ef4736bdb61a2a4db9 Author: Afif Elghraoui <a...@ghraoui.name> Date: Wed Nov 4 00:03:34 2015 -0800 Add draft copyrigh

[med-svn] [bcftools] branch pristine-tar created (now de93ced)

2015-11-04 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a change to branch pristine-tar in repository bcftools. at de93ced pristine-tar data for bcftools_1.2.orig.tar.gz This branch includes the following new commits: new de93ced pristine-tar

[med-svn] [artemis] 01/01: Add upstream-contact and update project homepage link

2015-11-05 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a commit to branch master in repository artemis. commit 788a2a841ed2700caa9049032f080ba9faec55b6 Author: Afif Elghraoui <a...@ghraoui.name> Date: Thu Nov 5 22:09:35 2015 -0800 Add upstream-c

[med-svn] [artemis] branch master updated (2670249 -> 788a2a8)

2015-11-05 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a change to branch master in repository artemis. from 2670249 artemis (16.0.0+dfsg-2) unstable; urgency=medium new 788a2a8 Add upstream-contact and update project homepage link The 1

[med-svn] [python-avro] 01/02: Clarify package descriptions for Python libraries.

2015-11-05 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a commit to branch master in repository python-avro. commit 8e2d31c921e0d154c3482fc3771739dc0e114fe3 Author: Ben Finney Date: Fri Nov 6 12:39:41 2015 +1100 Clarify package

[med-svn] [python-avro] 02/02: Add changelog entry for next upload

2015-11-05 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a commit to branch master in repository python-avro. commit eff775ff6772d400ccf33e22c4c4e1a48525c97f Author: Afif Elghraoui <a...@ghraoui.name> Date: Thu Nov 5 22:22:28 2015 -0800 Add changelog

[med-svn] [python-avro] branch master updated (5c09cc1 -> eff775f)

2015-11-05 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a change to branch master in repository python-avro. from 5c09cc1 python-avro (1.8.0~rc0+dfsg-1) unstable; urgency=low new 8e2d31c Clarify package descriptions for Python libraries. new

[med-svn] [bcftools] 01/01: Configure autopkgtest

2015-11-06 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a commit to branch master in repository bcftools. commit cf1abb2fb8dcb9cd925430ceaa663ba718abfb4d Author: Afif Elghraoui <a...@ghraoui.name> Date: Fri Nov 6 00:43:03 2015 -0800 Configure autop

[med-svn] [bcftools] branch master updated (f3ef111 -> cf1abb2)

2015-11-06 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a change to branch master in repository bcftools. from f3ef111 Add d/watch file new cf1abb2 Configure autopkgtest The 1 revisions listed above as "new" are entirely new to this repository and

[med-svn] [pbgenomicconsensus] branch master updated (52e321c -> aa2a21d)

2015-10-13 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a change to branch master in repository pbgenomicconsensus. from 52e321c Add draft autopkgtest control file new 90ba178 Generate manpage for variantCaller.py from upstream doc new

[med-svn] [pbgenomicconsensus] 03/06: Make tests verbose

2015-10-13 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a commit to branch master in repository pbgenomicconsensus. commit 54590e3cd7b0d6129fe33b2f64c914aa9c4142be Author: Afif Elghraoui <a...@ghraoui.name> Date: Tue Oct 13 20:47:04 2015 -0700 Make

[med-svn] [pbgenomicconsensus] 02/06: Add manpages for remaining package executables

2015-10-13 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a commit to branch master in repository pbgenomicconsensus. commit cf0fe579caa6b9d11ba557ad427d03679c8bb8ef Author: Afif Elghraoui <a...@ghraoui.name> Date: Tue Oct 13 20:44:11 2015 -0700 Add ma

[med-svn] [pbgenomicconsensus] 01/06: Generate manpage for variantCaller.py from upstream doc

2015-10-13 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a commit to branch master in repository pbgenomicconsensus. commit 90ba178ac76759ec70861d509612821472e2345b Author: Afif Elghraoui <a...@ghraoui.name> Date: Tue Oct 13 19:38:37 2015 -0700 Generate m

[med-svn] [pbgenomicconsensus] 04/06: Fix spelling error

2015-10-13 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a commit to branch master in repository pbgenomicconsensus. commit 04905748b503665f488c40fe4c061b4ddcdc261a Author: Afif Elghraoui <a...@ghraoui.name> Date: Tue Oct 13 21:03:49 2015 -0700 Fix sp

[med-svn] [pbgenomicconsensus] 06/06: pbgenomicconsensus (1.0.0-1) unstable; urgency=low

2015-10-13 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a commit to branch master in repository pbgenomicconsensus. commit aa2a21dc7963f5e37e4e0231d9ccaf2dcc6c93d8 Author: Afif Elghraoui <a...@ghraoui.name> Date: Tue Oct 13 21:53:50 2015

[med-svn] [pbgenomicconsensus] 05/06: Leave scripts with language extensions alone to avoid potential problems

2015-10-13 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a commit to branch master in repository pbgenomicconsensus. commit 7ffd0a43ccda5768c3d95104d54ffde45bc87810 Author: Afif Elghraoui <a...@ghraoui.name> Date: Tue Oct 13 21:04:39 2015 -0700 Leave s

[med-svn] [pbgenomicconsensus] branch master updated (077bf45 -> d7d9eb5)

2015-10-07 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a change to branch master in repository pbgenomicconsensus. from 077bf45 Add missing dependency on python-pkg-resources new d7d9eb5 Generate a manpage from one of the documentation files The

[med-svn] [python-cobra] tag debian/0.4.0b4-1_bpo8+2 created (now 4d742e2)

2015-10-07 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a change to tag debian/0.4.0b4-1_bpo8+2 in repository python-cobra. at 4d742e2 (commit) This tag includes the following new commits: new 649aff3 Work around issue with pybuild on jessie for

[med-svn] [python-cobra] 02/02: python-cobra (0.4.0b4-1~bpo8+2) jessie-backports; urgency=medium

2015-10-07 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a commit to tag debian/0.4.0b4-1_bpo8+2 in repository python-cobra. commit 4d742e2709d45ebacc48ecfd37ae1b6fb6c922c1 Author: Afif Elghraoui <a...@ghraoui.name> Date: Wed Oct 7 21:14:45 2015 -0700

[med-svn] [python-cobra] 01/02: Work around issue with pybuild on jessie for detecting python3 version

2015-10-07 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a commit to tag debian/0.4.0b4-1_bpo8+2 in repository python-cobra. commit 649aff3ba12693682390ea43a4a1fb0552a7536d Author: Afif Elghraoui <a...@ghraoui.name> Date: Wed Oct 7 21:13:18 2015 -0700

[med-svn] [python-cobra] branch debian/jessie-backports updated (0c57031 -> 4d742e2)

2015-10-07 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a change to branch debian/jessie-backports in repository python-cobra. from 0c57031 Add changelog entry for 0.4.0b4-1 bpo8 adds 649aff3 Work around issue with pybuild on jessie for detecting

[med-svn] [pbgenomicconsensus] branch master updated (d7d9eb5 -> b72f05e)

2015-10-08 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a change to branch master in repository pbgenomicconsensus. from d7d9eb5 Generate a manpage from one of the documentation files new b72f05e Patch more of the upstream documentation to format

[med-svn] [pbgenomicconsensus] 01/01: Patch more of the upstream documentation to format as manpages

2015-10-08 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a commit to branch master in repository pbgenomicconsensus. commit b72f05e57aabcb886f3289d5245a3ec8c6ad0ef5 Author: Afif Elghraoui <a...@ghraoui.name> Date: Thu Oct 8 01:03:46 2015 -0700 Patc

[med-svn] [artemis] 01/03: Add the source directory to the CLASSPATH

2015-10-21 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a commit to branch master in repository artemis. commit 960fbff8b6804b2bdaafad92a2126da166a1d555 Author: Afif Elghraoui <a...@ghraoui.name> Date: Wed Oct 21 02:15:38 2015 -0700 Add the source dir

[med-svn] [artemis] branch master updated (3eb88cb -> 79e3000)

2015-10-21 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a change to branch master in repository artemis. from 3eb88cb Refactor to allow tweaking CLASSPATH from within d/rules new 960fbff Add the source directory to the CLASSPATH new cb80ef9

[med-svn] [artemis] 03/03: Fix typo in one of the batik jar file names

2015-10-21 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a commit to branch master in repository artemis. commit 79e3000ba506471e4c1fe50377ab3fc38d075d57 Author: Afif Elghraoui <a...@ghraoui.name> Date: Wed Oct 21 02:58:29 2015 -0700 Fix typo

[med-svn] [artemis] 02/03: Fix typo in the jar file name for libcommons-net2

2015-10-21 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a commit to branch master in repository artemis. commit cb80ef9b4e4edb1b0de06dbbf12a55ec823c590d Author: Afif Elghraoui <a...@ghraoui.name> Date: Wed Oct 21 02:17:14 2015 -0700 Fix typo in the ja

[med-svn] [python-avro] 03/07: Build-depend on python{3, }-all rather than simply python{3, }

2015-10-18 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a commit to branch master in repository python-avro. commit 770f0a8ea3335c007a102fa45c0210719351743e Author: Afif Elghraoui <a...@ghraoui.name> Date: Sat Oct 17 16:56:59 2015 -0700 Build-depend on

[med-svn] [python-avro] branch master updated (195a491 -> 3246cc8)

2015-10-18 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a change to branch master in repository python-avro. from 195a491 Add ITP number to changelog and set unreleased new a067512 Add manpage stub for the avro executable new e6725b2

[med-svn] [python-avro] 02/07: Remove /usr/bin/avro from python2 package

2015-10-18 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a commit to branch master in repository python-avro. commit e6725b2e1c429337b411b70298bc03dfeaa0bc24 Author: Afif Elghraoui <a...@ghraoui.name> Date: Sat Oct 17 12:05:28 2015 -0700 Remove /usr/bi

[med-svn] [python-avro] 07/07: Add package descriptions

2015-10-18 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a commit to branch master in repository python-avro. commit 3246cc8b911eaeaea4649ffaaa8e2c353916f41a Author: Afif Elghraoui <a...@ghraoui.name> Date: Sat Oct 17 23:03:17 2015 -0700 Add p

[med-svn] [python-avro] 05/07: Enable build-time testing for python2 package (which needs ant)

2015-10-18 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a commit to branch master in repository python-avro. commit c36770b95cdd20846bfa119b5967f0f12ff70495 Author: Afif Elghraoui <a...@ghraoui.name> Date: Sat Oct 17 18:23:41 2015 -0700 Enable buil

[med-svn] [python-avro] 06/07: Properly remove /usr/bin/avro provided by the python2 package

2015-10-18 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a commit to branch master in repository python-avro. commit 903549aac8814f65a9f6f54d2e98b0753f43b061 Author: Afif Elghraoui <a...@ghraoui.name> Date: Sat Oct 17 18:38:08 2015 -0700 Properly remov

[med-svn] [python-avro] 01/07: Add manpage stub for the avro executable

2015-10-18 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a commit to branch master in repository python-avro. commit a067512c44b0669c6bf0432b65534f94bfd89223 Author: Afif Elghraoui <a...@ghraoui.name> Date: Sat Oct 17 12:04:29 2015 -0700 Add manpag

[med-svn] [pbseqlib] 04/04: Initial packaging

2015-10-17 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a commit to branch master in repository pbseqlib. commit 1bf6953468342a76211080de2252a4d250c3338b Author: Afif Elghraoui <a...@ghraoui.name> Date: Fri Oct 16 01:29:20 2015 -0700 Initial pac

[med-svn] [pbseqlib] 02/02: pristine-tar data for pbseqlib_0~20151014+gitbe5d1bf.orig.tar.gz

2015-10-17 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a commit to branch pristine-tar in repository pbseqlib. commit 5ab0db4d7312fe95d9da2fcad07bdcfee47ff4dd Author: Afif Elghraoui <a...@ghraoui.name> Date: Thu Oct 15 23:28:03 2015 -0700 pristine-ta

[med-svn] [pbseqlib] 03/04: Merge tag 'upstream/0_20151014+gitbe5d1bf'

2015-10-17 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a commit to branch master in repository pbseqlib. commit 4dcaffe5f428325eb8f80a87e24461766310465f Merge: 011a4f9 4bf6973 Author: Afif Elghraoui <a...@ghraoui.name> Date: Thu Oct 15 23:28:04 2015

[med-svn] [pbseqlib] annotated tag upstream/0_20150702+git98a302a created (now f73fce6)

2015-10-17 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a change to annotated tag upstream/0_20150702+git98a302a in repository pbseqlib. at f73fce6 (tag) tagging 011a4f98d400083b0a3750b1a0513c5542f4ec93 (commit) tagged by Afif Elghraoui

[med-svn] [pbseqlib] branch pristine-tar created (now 5ab0db4)

2015-10-17 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a change to branch pristine-tar in repository pbseqlib. at 5ab0db4 pristine-tar data for pbseqlib_0~20151014+gitbe5d1bf.orig.tar.gz This branch includes the following new commits: new

[med-svn] [pbseqlib] annotated tag upstream/0_20151014+gitbe5d1bf created (now e9b1949)

2015-10-17 Thread Afif Elghraoui
+git98a302a tagged by Afif Elghraoui on Thu Oct 15 23:28:03 2015 -0700 - Log - Upstream version 0~20151014+gitbe5d1bf Afif Elghraoui (1): Imported Upstream version 0~20151014+gitbe5d1bf

[med-svn] [pbseqlib] branch master created (now 1bf6953)

2015-10-17 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a change to branch master in repository pbseqlib. at 1bf6953 Initial packaging This branch includes the following new commits: new 011a4f9 Imported Upstream version 0~20150702+git98a302a

[med-svn] [pbseqlib] branch upstream created (now 4bf6973)

2015-10-17 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a change to branch upstream in repository pbseqlib. at 4bf6973 Imported Upstream version 0~20151014+gitbe5d1bf This branch includes the following new commits: new 011a4f9 Imported Upstream

[med-svn] [pbseqlib] 01/02: pristine-tar data for libblasr_0~20150702+git98a302a.orig.tar.gz

2015-10-17 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a commit to branch pristine-tar in repository pbseqlib. commit b203daf83dee45bcba57cc31d6c625a9ac1c8927 Author: Afif Elghraoui <a...@ghraoui.name> Date: Sun Sep 6 11:36:54 2015 -0700 pristine-ta

[med-svn] [python-avro] 02/02: Initial packaging

2015-10-17 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a commit to branch master in repository python-avro. commit 1e079acd2df29b18ba82e6ace4cb4226aacd9330 Author: Afif Elghraoui <a...@ghraoui.name> Date: Sat Oct 17 01:35:58 2015 -0700 Initial pac

[med-svn] [python-avro] annotated tag upstream/1.7.7 created (now ed39ea4)

2015-10-17 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a change to annotated tag upstream/1.7.7 in repository python-avro. at ed39ea4 (tag) tagging b7e7effced56ef5c594726aea1c382a096330153 (commit) tagged by Afif Elghraoui on Fri Oct 16 23

[med-svn] [python-avro] branch pristine-tar created (now 2c99b0f)

2015-10-17 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a change to branch pristine-tar in repository python-avro. at 2c99b0f pristine-tar data for python-avro_1.7.7.orig.tar.xz This branch includes the following new commits: new 2c99b0f

[med-svn] [python-avro] 01/01: pristine-tar data for python-avro_1.7.7.orig.tar.xz

2015-10-17 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a commit to branch pristine-tar in repository python-avro. commit 2c99b0fc6ec8fc7716ee8519dffc3e244994307d Author: Afif Elghraoui <a...@ghraoui.name> Date: Fri Oct 16 23:21:42 2015 -0700 pristine-ta

[med-svn] [python-avro] branch master created (now 1e079ac)

2015-10-17 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a change to branch master in repository python-avro. at 1e079ac Initial packaging This branch includes the following new commits: new b7e7eff Imported Upstream version 1.7.7 new

[med-svn] [python-avro] branch upstream created (now b7e7eff)

2015-10-17 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a change to branch upstream in repository python-avro. at b7e7eff Imported Upstream version 1.7.7 This branch includes the following new commits: new b7e7eff Imported Upstream version

[med-svn] [python-avro] branch master updated (1e079ac -> 195a491)

2015-10-17 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a change to branch master in repository python-avro. from 1e079ac Initial packaging new 195a491 Add ITP number to changelog and set unreleased The 1 revisions listed above as "new" are

[med-svn] [python-avro] 01/01: Add ITP number to changelog and set unreleased

2015-10-17 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a commit to branch master in repository python-avro. commit 195a49132dc733caea25a3bb6c637dfdbe3570df Author: Afif Elghraoui <a...@ghraoui.name> Date: Sat Oct 17 11:44:28 2015 -0700 Add ITP

[med-svn] [pbgenomicconsensus] 01/01: Generate a manpage from one of the documentation files

2015-10-07 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a commit to branch master in repository pbgenomicconsensus. commit d7d9eb572477a9a56023fe4f480ef945c0ecfea8 Author: Afif Elghraoui <a...@ghraoui.name> Date: Wed Oct 7 02:09:53 2015 -0700 Ge

[med-svn] [pbgenomicconsensus] 02/06: Align header lines on rst page to silence rst2man warnings

2015-10-13 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a commit to branch master in repository pbgenomicconsensus. commit c36c9acd6b138d4bbc0e4c38ef4250ab5383808f Author: Afif Elghraoui <a...@ghraoui.name> Date: Mon Oct 12 22:50:24 2015 -0700 Align

[med-svn] [pbgenomicconsensus] branch master updated (b72f05e -> 52e321c)

2015-10-13 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a change to branch master in repository pbgenomicconsensus. from b72f05e Patch more of the upstream documentation to format as manpages new e6f1bc2 Fix build-dependency to get rst2man

[med-svn] [pbgenomicconsensus] 04/06: Build manpages during dh_install rather than dh_auto_build

2015-10-13 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a commit to branch master in repository pbgenomicconsensus. commit 9e30ad669132cf43dc41414b8529196ca9727440 Author: Afif Elghraoui <a...@ghraoui.name> Date: Mon Oct 12 23:24:45 2015 -0700 Build ma

[med-svn] [pbgenomicconsensus] 06/06: Add draft autopkgtest control file

2015-10-13 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a commit to branch master in repository pbgenomicconsensus. commit 52e321c095d945ea397227637704e485708495e4 Author: Afif Elghraoui <a...@ghraoui.name> Date: Tue Oct 13 00:10:48 2015 -0700 Add

[med-svn] [pbgenomicconsensus] 05/06: Set up build-time tests

2015-10-13 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a commit to branch master in repository pbgenomicconsensus. commit ea39960af5b5f96e8687a1a230115e0357b4e58a Author: Afif Elghraoui <a...@ghraoui.name> Date: Tue Oct 13 00:06:02 2015 -0700 Set up

[med-svn] [pbgenomicconsensus] 01/06: Fix build-dependency to get rst2man

2015-10-13 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a commit to branch master in repository pbgenomicconsensus. commit e6f1bc2fc7cef341602afb30bd5379db755c2770 Author: Afif Elghraoui <a...@ghraoui.name> Date: Mon Oct 12 22:44:35 2015 -0700 Fix

[med-svn] [pbgenomicconsensus] 03/06: Use python-docutils rather than python3-docutils

2015-10-13 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a commit to branch master in repository pbgenomicconsensus. commit 6d1d71f9787c0e3b678f504cc0dcb27135664eff Author: Afif Elghraoui <a...@ghraoui.name> Date: Mon Oct 12 23:23:09 2015 -0700 Use

[med-svn] r20195 - trunk/helper-scripts

2015-10-05 Thread Afif Elghraoui
Author: afif-guest Date: 2015-10-06 04:38:19 + (Tue, 06 Oct 2015) New Revision: 20195 Modified: trunk/helper-scripts/debian-med-authors Log: Add missing author from when I migrated the wgs-assembler repository Modified: trunk/helper-scripts/debian-med-authors

[med-svn] [python-pysam] tag debian/0.8.3+ds1-3 created (now 1ca5cbe)

2015-10-06 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a change to tag debian/0.8.3+ds1-3 in repository python-pysam. at 1ca5cbe (commit) No new revisions were added by this update. -- Alioth's /usr/local/bin/git-commit-notice on

[med-svn] [python-pysam] 05/05: python-pysam (0.8.3+ds1-3) unstable; urgency=medium

2015-10-06 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a commit to branch master in repository python-pysam. commit 1ca5cbead99aa71aaf5b496b58d29705bd0a7d6b Author: Afif Elghraoui <a...@ghraoui.name> Date: Tue Oct 6 00:57:49 2015 -0700 python-pysam (0.8

[med-svn] [python-pysam] 01/05: Set up new revision

2015-10-06 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a commit to branch master in repository python-pysam. commit 9d00e6cad6e0d1b2a4530ff97b2205a900a5c197 Author: Afif Elghraoui <a...@ghraoui.name> Date: Tue Oct 6 00:36:39 2015 -0700 Set up new re

[med-svn] [python-pysam] 03/05: Revise python3 lintian overrides

2015-10-06 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a commit to branch master in repository python-pysam. commit 475a06624ab118f37764afaefa9c6014f3bb1d69 Author: Afif Elghraoui <a...@ghraoui.name> Date: Tue Oct 6 00:53:18 2015 -0700 Revise python3 l

[med-svn] [python-pysam] 04/05: Add lintian override for timestamped archive in python-pysam-tests

2015-10-06 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a commit to branch master in repository python-pysam. commit fe4747501ec2fab8a446a3ec21a17f9070d3fcf9 Author: Afif Elghraoui <a...@ghraoui.name> Date: Tue Oct 6 00:55:01 2015 -0700 Add lintian ov

[med-svn] [python-pysam] branch master updated (2334c5d -> 1ca5cbe)

2015-10-06 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a change to branch master in repository python-pysam. from 2334c5d Merge branch 'master' of git+ssh://git.debian.org/git/debian-med/python-pysam new 9d00e6c Set up new revision new

[med-svn] [python-cobra] branch master updated (53ba895 - 4f620bb)

2015-07-09 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a change to branch master in repository python-cobra. from 53ba895 Upload to unstable (new) new 82e9edd Update watch file to pick up alpha and beta releases new 515cf06 Imported

[med-svn] [python-cobra] 09/10: Disable building of documentation until Sphinx 1.3 is available

2015-07-09 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a commit to branch master in repository python-cobra. commit 9b764866d415a11853503e5fd6b5a17d838dc685 Author: Afif Elghraoui a...@ghraoui.name Date: Thu Jul 9 21:23:29 2015 -0700 Disable building

[med-svn] [python-cobra] 10/10: Package ready for review

2015-07-09 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a commit to branch master in repository python-cobra. commit 4f620bb135afe5d05d504ce572677f08a0525cf0 Author: Afif Elghraoui a...@ghraoui.name Date: Thu Jul 9 21:26:00 2015 -0700 Package ready for review

[med-svn] [python-cobra] 06/10: Update d/copyright to reflect new upstream dual-licensing and correct gpl3 mistake

2015-07-09 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a commit to branch master in repository python-cobra. commit 9cf8ca0fda4571c45e3cd6f6e0e1c05557e5eec7 Author: Afif Elghraoui a...@ghraoui.name Date: Thu Jul 9 18:45:01 2015 -0700 Update d/copyright

[med-svn] [python-cobra] 07/10: Refine dh_install overrides to exclude jython code from python3 package

2015-07-09 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a commit to branch master in repository python-cobra. commit 9ed63c6b04073ac1fe0819f8b09c1000b52e932e Author: Afif Elghraoui a...@ghraoui.name Date: Thu Jul 9 21:18:17 2015 -0700 Refine dh_install

[med-svn] [python-cobra] annotated tag upstream/0.4.0b1 created (now 61c4bfd)

2015-07-10 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a change to annotated tag upstream/0.4.0b1 in repository python-cobra. at 61c4bfd (tag) tagging 515cf06a2d8a118f4a25650056d2a0e05d1dd735 (commit) replaces upstream/0.3.2 tagged by عفيف

[med-svn] [python-cobra] 05/10: Remove copyright statements for files removed upstream

2015-07-09 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a commit to branch master in repository python-cobra. commit 7f923d9d44aaa3a42d0785ddf1ebfd97a6cb76e8 Author: Afif Elghraoui a...@ghraoui.name Date: Thu Jul 9 18:27:55 2015 -0700 Remove copyright

[med-svn] [python-cobra] 01/01: pristine-tar data for python-cobra_0.4.0b1.orig.tar.gz

2015-07-09 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a commit to branch pristine-tar in repository python-cobra. commit 63642e140224dc21fc6e749c90977c3f3f7dea5e Author: عفيف الغراوي a...@ghraoui.name Date: Thu Jul 9 18:05:41 2015 -0700 pristine-tar data for

[med-svn] [python-cobra] branch upstream updated (35beca5 - 515cf06)

2015-07-09 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a change to branch upstream in repository python-cobra. from 35beca5 Imported Upstream version 0.3.2 new 515cf06 Imported Upstream version 0.4.0b1 The 1 revisions listed above as new are

[med-svn] [python-cobra] 04/10: Remove obsolete patches

2015-07-09 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a commit to branch master in repository python-cobra. commit be6efe5fa474278b9cee832ba79507c976b3e89c Author: Afif Elghraoui a...@ghraoui.name Date: Thu Jul 9 18:25:27 2015 -0700 Remove obsolete patches

[med-svn] [python-cobra] branch pristine-tar updated (5ef93c4 - 63642e1)

2015-07-09 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a change to branch pristine-tar in repository python-cobra. from 5ef93c4 pristine-tar data for python-cobra_0.3.2.orig.tar.gz new 63642e1 pristine-tar data for python-cobra_0.4.0b1.orig.tar.gz

[med-svn] [python-cobra] 08/10: Add build-dependencies on python(3)-six

2015-07-09 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a commit to branch master in repository python-cobra. commit c71ed43ee2bce3a8d4307cb3e8da52443c7414ae Author: Afif Elghraoui a...@ghraoui.name Date: Thu Jul 9 21:21:10 2015 -0700 Add build-dependencies

[med-svn] [python-cobra] 01/10: Update watch file to pick up alpha and beta releases

2015-07-09 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a commit to branch master in repository python-cobra. commit 82e9edda745d0fd0f576e35df3b83a83c62a57bd Author: عفيف الغراوي a...@ghraoui.name Date: Thu Jul 9 18:04:59 2015 -0700 Update watch file to pick

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