[med-svn] [Git][med-team/spoa][upstream] New upstream version 3.4.0+ds

Michael R. Crusoe pushed to branch upstream at Debian Med / spoa Commits: 4b7872b3 by Michael R. Crusoe at 2020-08-25T15:55:09+02:00 New upstream version 3.4.0+ds - - - - - 30 changed files: - + vendor/cpu_features/.clang-format - + vendor/cpu_features/.gitignore - + vendor/cpu_features

[med-svn] [Git][med-team/picard-tools][pristine-tar] pristine-tar data for picard-tools_2.23.3+dfsg.orig.tar.xz

Michael R. Crusoe pushed to branch pristine-tar at Debian Med / picard-tools Commits: d75e4d8c by Michael R. Crusoe at 2020-08-27T17:07:26+02:00 pristine-tar data for picard-tools_2.23.3+dfsg.orig.tar.xz - - - - - 2 changed files: - + picard-tools_2.23.3+dfsg.orig.tar.xz.delta - + picard

[med-svn] [Git][med-team/vg][master] release 1.26.0+ds-1

Michael R. Crusoe pushed to branch master at Debian Med / vg Commits: 29001f3b by Michael R. Crusoe at 2020-08-28T18:30:41+02:00 release 1.26.0+ds-1 - - - - - 1 changed file: - debian/changelog Changes: = debian/changelog

[med-svn] [Git][med-team/vg] Pushed new tag debian/1.26.0+ds-1

Michael R. Crusoe pushed new tag debian/1.26.0+ds-1 at Debian Med / vg -- View it on GitLab: https://salsa.debian.org/med-team/vg/-/tree/debian/1.26.0+ds-1 You're receiving this email because of your account on salsa.debian.org. ___ debia

[med-svn] [Git][med-team/picard-tools] Pushed new tag upstream/2.23.3+dfsg

Michael R. Crusoe pushed new tag upstream/2.23.3+dfsg at Debian Med / picard-tools -- View it on GitLab: https://salsa.debian.org/med-team/picard-tools/-/tree/upstream/2.23.3+dfsg You're receiving this email because of your account on salsa.debia

[med-svn] [Git][med-team/picard-tools] Pushed new tag upstream/2.21.8+dfsg

Michael R. Crusoe pushed new tag upstream/2.21.8+dfsg at Debian Med / picard-tools -- View it on GitLab: https://salsa.debian.org/med-team/picard-tools/-/tree/upstream/2.21.8+dfsg You're receiving this email because of your account on salsa.debia

[med-svn] [Git][med-team/picard-tools][master] 11 commits: routine-update: New upstream version

Michael R. Crusoe pushed to branch master at Debian Med / picard-tools Commits: 42c77037 by Michael R. Crusoe at 2020-08-27T17:05:54+02:00 routine-update: New upstream version - - - - - beb54d3c by Michael R. Crusoe at 2020-08-27T17:06:02+02:00 New upstream version 2.23.3+dfsg

[med-svn] [Git][med-team/picard-tools][upstream] New upstream version 2.23.3+dfsg

Michael R. Crusoe pushed to branch upstream at Debian Med / picard-tools Commits: beb54d3c by Michael R. Crusoe at 2020-08-27T17:06:02+02:00 New upstream version 2.23.3+dfsg - - - - - 30 changed files: - README.md - build.gradle - src/main/java/picard/analysis/CollectMultipleMetrics.java

[med-svn] [Git][med-team/vg] Deleted tag debian/1.26.0+ds-1

Michael R. Crusoe deleted tag debian/1.26.0+ds-1 at Debian Med / vg -- You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://a

[med-svn] [Git][med-team/vg][master] remove "team upload"

Michael R. Crusoe pushed to branch master at Debian Med / vg Commits: 13b208bc by Michael R. Crusoe at 2020-08-29T08:43:17+02:00 remove "team upload" - - - - - 1 changed file: - debian/changelog Changes: = debian

[med-svn] [Git][med-team/vg] Pushed new tag debian/1.21.0+ds2-1

Michael R. Crusoe pushed new tag debian/1.21.0+ds2-1 at Debian Med / vg -- View it on GitLab: https://salsa.debian.org/med-team/vg/-/tree/debian/1.21.0+ds2-1 You're receiving this email because of your account on salsa.debian.org. ___ debia

[med-svn] [Git][med-team/vg] Pushed new tag debian/1.26.0+ds-1

Michael R. Crusoe pushed new tag debian/1.26.0+ds-1 at Debian Med / vg -- View it on GitLab: https://salsa.debian.org/med-team/vg/-/tree/debian/1.26.0+ds-1 You're receiving this email because of your account on salsa.debian.org. ___ debia

[med-svn] [Git][med-team/mmseqs2][master] 3 commits: Revert "Apply patch from Adrian Bunk to revert optimisation for i386"

Michael R. Crusoe pushed to branch master at Debian Med / mmseqs2 Commits: 80446d9b by Michael R. Crusoe at 2020-05-20T08:52:52+02:00 Revert "Apply patch from Adrian Bunk to revert optimisation for i386" This reverts commit 8d13131cf09bd65340ffc419179cac4efcc1c6b7. - - - - - 4

[med-svn] [Git][med-team/hhsuite] Pushed new tag upstream/3.3.0+ds

Michael R. Crusoe pushed new tag upstream/3.3.0+ds at Debian Med / hhsuite -- View it on GitLab: https://salsa.debian.org/med-team/hhsuite/-/tree/upstream/3.3.0+ds You're receiving this email because of your account on salsa.debian.org. ___ d

[med-svn] [Git][med-team/mmseqs2][master] 3 commits: typo fix

Michael R. Crusoe pushed to branch master at Debian Med / mmseqs2 Commits: 3d90f30e by Michael R. Crusoe at 2020-08-31T14:08:57+02:00 typo fix - - - - - d976d663 by Michael R. Crusoe at 2020-08-31T14:12:54+02:00 routine-update: debhelper-compat 13 - - - - - 87d06eb0 by Michael R. Crusoe at

[med-svn] [Git][med-team/mmseqs2] Pushed new tag debian/11-e1a1c+ds-4

Michael R. Crusoe pushed new tag debian/11-e1a1c+ds-4 at Debian Med / mmseqs2 -- View it on GitLab: https://salsa.debian.org/med-team/mmseqs2/-/tree/debian/11-e1a1c+ds-4 You're receiving this email because of your account on salsa.debia

[med-svn] [Git][med-team/diamond-aligner] Pushed new tag debian/2.0.4-1

Michael R. Crusoe pushed new tag debian/2.0.4-1 at Debian Med / diamond-aligner -- View it on GitLab: https://salsa.debian.org/med-team/diamond-aligner/-/tree/debian/2.0.4-1 You're receiving this email because of your account on salsa.debia

[med-svn] [Git][med-team/diamond-aligner][upstream] New upstream version 2.0.4

Michael R. Crusoe pushed to branch upstream at Debian Med / diamond-aligner Commits: b8326e5f by Michael R. Crusoe at 2020-08-31T13:49:39+02:00 New upstream version 2.0.4 - - - - - 30 changed files: - CMakeLists.txt - Dockerfile - src/ChangeLog - src/align/align.cpp - src/align/culling.cpp

[med-svn] [Git][med-team/diamond-aligner] Pushed new tag upstream/2.0.4

Michael R. Crusoe pushed new tag upstream/2.0.4 at Debian Med / diamond-aligner -- View it on GitLab: https://salsa.debian.org/med-team/diamond-aligner/-/tree/upstream/2.0.4 You're receiving this email because of your account on salsa.debia

[med-svn] [Git][med-team/diamond-aligner][master] 6 commits: New upstream version 2.0.4

Michael R. Crusoe pushed to branch master at Debian Med / diamond-aligner Commits: b8326e5f by Michael R. Crusoe at 2020-08-31T13:49:39+02:00 New upstream version 2.0.4 - - - - - 977047af by Michael R. Crusoe at 2020-08-31T13:49:39+02:00 routine-update: New upstream version - - - - - e589edda

[med-svn] [Git][med-team/diamond-aligner][pristine-tar] pristine-tar data for diamond-aligner_2.0.4.orig.tar.xz

Michael R. Crusoe pushed to branch pristine-tar at Debian Med / diamond-aligner Commits: 018b2b46 by Michael R. Crusoe at 2020-08-31T13:49:41+02:00 pristine-tar data for diamond-aligner_2.0.4.orig.tar.xz - - - - - 2 changed files: - + diamond-aligner_2.0.4.orig.tar.xz.delta - + diamond

[med-svn] [Git][med-team/hhsuite] Pushed new tag debian/3.3.0+ds-1

Michael R. Crusoe pushed new tag debian/3.3.0+ds-1 at Debian Med / hhsuite -- View it on GitLab: https://salsa.debian.org/med-team/hhsuite/-/tree/debian/3.3.0+ds-1 You're receiving this email because of your account on salsa.debian.org. ___ d

[med-svn] [Git][med-team/hhsuite][master] 20 commits: New upstream version 3.3.0

Michael R. Crusoe pushed to branch master at Debian Med / hhsuite Commits: 796fa4ba by Michael R. Crusoe at 2020-08-31T09:36:15+02:00 New upstream version 3.3.0 - - - - - d723a752 by Michael R. Crusoe at 2020-08-31T10:55:04+02:00 New upstream version 3.3.0+ds - - - - - 971003f1 by Michael R

[med-svn] [Git][med-team/hhsuite][upstream] 3 commits: New upstream version 3.3.0

Michael R. Crusoe pushed to branch upstream at Debian Med / hhsuite Commits: 796fa4ba by Michael R. Crusoe at 2020-08-31T09:36:15+02:00 New upstream version 3.3.0 - - - - - d723a752 by Michael R. Crusoe at 2020-08-31T10:55:04+02:00 New upstream version 3.3.0+ds - - - - - fd0c1cde by Michael R

[med-svn] [Git][med-team/hhsuite][pristine-tar] 3 commits: pristine-tar data for hhsuite_3.3.0.orig.tar.xz

Michael R. Crusoe pushed to branch pristine-tar at Debian Med / hhsuite Commits: cc47d77c by Michael R. Crusoe at 2020-08-31T09:36:27+02:00 pristine-tar data for hhsuite_3.3.0.orig.tar.xz - - - - - 3d29562b by Michael R. Crusoe at 2020-08-31T10:55:14+02:00 pristine-tar data for hhsuite_3.3.0

[med-svn] [Git][med-team/diamond-aligner][master] 2 commits: Remove mips64el from the arch list, it is not supported upstream

Michael R. Crusoe pushed to branch master at Debian Med / diamond-aligner Commits: 3851ce0c by Michael R. Crusoe at 2020-08-31T16:12:48+02:00 Remove mips64el from the arch list, it is not supported upstream - - - - - 79559652 by Michael R. Crusoe at 2020-08-31T16:13:05+02:00 release 2.0.4-2

[med-svn] [Git][med-team/diamond-aligner] Pushed new tag debian/2.0.4-2

Michael R. Crusoe pushed new tag debian/2.0.4-2 at Debian Med / diamond-aligner -- View it on GitLab: https://salsa.debian.org/med-team/diamond-aligner/-/tree/debian/2.0.4-2 You're receiving this email because of your account on salsa.debia

[med-svn] [Git][med-team/hhsuite][master] 2 commits: Fix non-x86 builds

Michael R. Crusoe pushed to branch master at Debian Med / hhsuite Commits: e1aac0d7 by Michael R. Crusoe at 2020-09-01T11:37:21+02:00 Fix non-x86 builds - - - - - b855704c by Michael R. Crusoe at 2020-09-01T11:38:01+02:00 release 3.3.0+ds-2 - - - - - 2 changed files: - debian/changelog

[med-svn] [Git][med-team/hhsuite] Pushed new tag debian/3.3.0+ds-2

Michael R. Crusoe pushed new tag debian/3.3.0+ds-2 at Debian Med / hhsuite -- View it on GitLab: https://salsa.debian.org/med-team/hhsuite/-/tree/debian/3.3.0+ds-2 You're receiving this email because of your account on salsa.debian.org. ___ d

[med-svn] [Git][med-team/mmseqs2][master] 10 commits: exclude the upstream copy of simde

Michael R. Crusoe pushed to branch master at Debian Med / mmseqs2 Commits: bfcab210 by Michael R. Crusoe at 2020-09-01T14:38:16+02:00 exclude the upstream copy of simde - - - - - 7c3b24bb by Michael R. Crusoe at 2020-09-01T14:39:02+02:00 routine-update: New upstream version

[med-svn] [Git][med-team/mmseqs2][upstream] New upstream version 12-113e3+ds

Michael R. Crusoe pushed to branch upstream at Debian Med / mmseqs2 Commits: 14a536b2 by Michael R. Crusoe at 2020-09-01T14:39:06+02:00 New upstream version 12-113e3+ds - - - - - 30 changed files: - .travis.yml - CMakeLists.txt - Dockerfile - README.md - azure-pipelines.yml - cmake

[med-svn] [Git][med-team/mmseqs2] Pushed new tag upstream/12-113e3+ds

Michael R. Crusoe pushed new tag upstream/12-113e3+ds at Debian Med / mmseqs2 -- View it on GitLab: https://salsa.debian.org/med-team/mmseqs2/-/tree/upstream/12-113e3+ds You're receiving this email because of your account on salsa.debia

[med-svn] [Git][med-team/mmseqs2][pristine-tar] pristine-tar data for mmseqs2_12-113e3+ds.orig.tar.xz

Michael R. Crusoe pushed to branch pristine-tar at Debian Med / mmseqs2 Commits: 2781f9db by Michael R. Crusoe at 2020-09-01T14:39:26+02:00 pristine-tar data for mmseqs2_12-113e3+ds.orig.tar.xz - - - - - 2 changed files: - + mmseqs2_12-113e3+ds.orig.tar.xz.delta - + mmseqs2_12-113e3

[med-svn] [Git][med-team/simde] Pushed new tag debian/0.6.0-2

Michael R. Crusoe pushed new tag debian/0.6.0-2 at Debian Med / simde -- View it on GitLab: https://salsa.debian.org/med-team/simde/-/tree/debian/0.6.0-2 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-c

[med-svn] [Git][med-team/mmseqs2] Pushed new tag debian/12-113e3+ds-1

Michael R. Crusoe pushed new tag debian/12-113e3+ds-1 at Debian Med / mmseqs2 -- View it on GitLab: https://salsa.debian.org/med-team/mmseqs2/-/tree/debian/12-113e3+ds-1 You're receiving this email because of your account on salsa.debia

[med-svn] [Git][med-team/hhsuite] Pushed new tag debian/3.3.0+ds-3

Michael R. Crusoe pushed new tag debian/3.3.0+ds-3 at Debian Med / hhsuite -- View it on GitLab: https://salsa.debian.org/med-team/hhsuite/-/tree/debian/3.3.0+ds-3 You're receiving this email because of your account on salsa.debian.org. ___ d

[med-svn] [Git][med-team/diamond-aligner] Deleted tag debian/2.0.4-2

Michael R. Crusoe deleted tag debian/2.0.4-2 at Debian Med / diamond-aligner -- You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://a

[med-svn] [Git][med-team/diamond-aligner][master] team upload

Michael R. Crusoe pushed to branch master at Debian Med / diamond-aligner Commits: bd36664e by Michael R. Crusoe at 2020-09-02T15:13:44+02:00 team upload - - - - - 1 changed file: - debian/changelog Changes: = debian/changelog

[med-svn] [Git][med-team/diamond-aligner] Pushed new tag debian/2.0.4-2

Michael R. Crusoe pushed new tag debian/2.0.4-2 at Debian Med / diamond-aligner -- View it on GitLab: https://salsa.debian.org/med-team/diamond-aligner/-/tree/debian/2.0.4-2 You're receiving this email because of your account on salsa.debia

[med-svn] [Git][med-team/hhsuite][master] 3 commits: Fix tests on non-x86.

Michael R. Crusoe pushed to branch master at Debian Med / hhsuite Commits: 7653344e by Michael R. Crusoe at 2020-09-02T15:25:57+02:00 Fix tests on non-x86. - - - - - d498df78 by Michael R. Crusoe at 2020-09-02T15:28:08+02:00 Include Built-Using: ${simde:Built-Using} to satisfy GPL

[med-svn] [Git][med-team/hhsuite] Pushed new tag debian/3.3.0+ds-4

Michael R. Crusoe pushed new tag debian/3.3.0+ds-4 at Debian Med / hhsuite -- View it on GitLab: https://salsa.debian.org/med-team/hhsuite/-/tree/debian/3.3.0+ds-4 You're receiving this email because of your account on salsa.debian.org. ___ d

[med-svn] [Git][med-team/simde] Pushed new tag debian/0.6.0-3

Michael R. Crusoe pushed new tag debian/0.6.0-3 at Debian Med / simde -- View it on GitLab: https://salsa.debian.org/med-team/simde/-/tree/debian/0.6.0-3 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-c

[med-svn] [Git][med-team/simde][master] 2 commits: Add patch for better altivec support from upstream.

Michael R. Crusoe pushed to branch master at Debian Med / simde Commits: 03490ce9 by Michael R. Crusoe at 2020-09-04T08:21:50+02:00 Add patch for better altivec support from upstream. - - - - - 4ecc0334 by Michael R. Crusoe at 2020-09-04T10:39:59+02:00 release 0.6.0-3 - - - - - 3 changed

[med-svn] [Git][med-team/vg] Pushed new tag upstream/1.27.1+ds

Michael R. Crusoe pushed new tag upstream/1.27.1+ds at Debian Med / vg -- View it on GitLab: https://salsa.debian.org/med-team/vg/-/tree/upstream/1.27.1+ds You're receiving this email because of your account on salsa.debian.org. ___ debia

[med-svn] [Git][med-team/vg][upstream] New upstream version 1.27.1+ds

Michael R. Crusoe pushed to branch upstream at Debian Med / vg Commits: e0883382 by Michael R. Crusoe at 2020-10-05T09:30:38+02:00 New upstream version 1.27.1+ds - - - - - 24 changed files: - README.md - deps/gbwt/.gitignore - deps/gbwt/CMakeLists.txt - deps/gbwt/Makefile - deps/gbwt

[med-svn] [Git][med-team/vg][master] 5 commits: routine-update: New upstream version

Michael R. Crusoe pushed to branch master at Debian Med / vg Commits: bf1b5c0b by Michael R. Crusoe at 2020-10-05T09:30:34+02:00 routine-update: New upstream version - - - - - e0883382 by Michael R. Crusoe at 2020-10-05T09:30:38+02:00 New upstream version 1.27.1+ds - - - - - c1946957 by

[med-svn] [Git][med-team/vg] Pushed new tag debian/1.27.1+ds-1

Michael R. Crusoe pushed new tag debian/1.27.1+ds-1 at Debian Med / vg -- View it on GitLab: https://salsa.debian.org/med-team/vg/-/tree/debian/1.27.1+ds-1 You're receiving this email because of your account on salsa.debian.org. ___ debia

[med-svn] [Git][med-team/vg][pristine-tar] pristine-tar data for vg_1.27.1+ds.orig.tar.xz

Michael R. Crusoe pushed to branch pristine-tar at Debian Med / vg Commits: 84d5fea5 by Michael R. Crusoe at 2020-10-05T09:32:44+02:00 pristine-tar data for vg_1.27.1+ds.orig.tar.xz - - - - - 2 changed files: - + vg_1.27.1+ds.orig.tar.xz.delta - + vg_1.27.1+ds.orig.tar.xz.id Changes

[med-svn] [Git][med-team/mmseqs2][master] Forwarded spelling patch upstream

Michael R. Crusoe pushed to branch master at Debian Med / mmseqs2 Commits: d2c135a4 by Michael R. Crusoe at 2020-10-08T16:09:23+02:00 Forwarded spelling patch upstream - - - - - 2 changed files: - debian/changelog - debian/patches/spelling Changes

[med-svn] [Git][med-team/proteinortho][upstream] New upstream version 6.0.23+dfsg

Michael R. Crusoe pushed to branch upstream at Debian Med / proteinortho Commits: 8911efee by Michael R. Crusoe at 2020-10-08T16:12:21+02:00 New upstream version 6.0.23+dfsg - - - - - 8 changed files: - CHANGELOG - CHANGEUID - LICENSE - Makefile - README.md - proteinortho6.pl - src/.gitlab

[med-svn] [Git][med-team/proteinortho] Pushed new tag debian/6.0.23+dfsg-1

Michael R. Crusoe pushed new tag debian/6.0.23+dfsg-1 at Debian Med / proteinortho -- View it on GitLab: https://salsa.debian.org/med-team/proteinortho/-/tree/debian/6.0.23+dfsg-1 You're receiving this email because of your account on salsa.debia

[med-svn] [Git][med-team/proteinortho] Pushed new tag upstream/6.0.23+dfsg

Michael R. Crusoe pushed new tag upstream/6.0.23+dfsg at Debian Med / proteinortho -- View it on GitLab: https://salsa.debian.org/med-team/proteinortho/-/tree/upstream/6.0.23+dfsg You're receiving this email because of your account on salsa.debia

[med-svn] [Git][med-team/proteinortho][pristine-tar] pristine-tar data for proteinortho_6.0.23+dfsg.orig.tar.xz

Michael R. Crusoe pushed to branch pristine-tar at Debian Med / proteinortho Commits: 2ff1c6da by Michael R. Crusoe at 2020-10-08T16:12:22+02:00 pristine-tar data for proteinortho_6.0.23+dfsg.orig.tar.xz - - - - - 2 changed files: - + proteinortho_6.0.23+dfsg.orig.tar.xz.delta

[med-svn] [Git][med-team/proteinortho][master] 6 commits: routine-update: New upstream version

Michael R. Crusoe pushed to branch master at Debian Med / proteinortho Commits: fa1371fb by Michael R. Crusoe at 2020-10-08T16:12:20+02:00 routine-update: New upstream version - - - - - 8911efee by Michael R. Crusoe at 2020-10-08T16:12:21+02:00 New upstream version 6.0.23+dfsg

[med-svn] [Git][med-team/picard-tools] Pushed new tag debian/2.23.3+dfsg-2

Michael R. Crusoe pushed new tag debian/2.23.3+dfsg-2 at Debian Med / picard-tools -- View it on GitLab: https://salsa.debian.org/med-team/picard-tools/-/tree/debian/2.23.3+dfsg-2 You're receiving this email because of your account on salsa.debia

[med-svn] [Git][med-team/picard-tools][master] 3 commits: adjustments to avoid testing on non-amd64

Michael R. Crusoe pushed to branch master at Debian Med / picard-tools Commits: 037e04a9 by Michael R. Crusoe at 2020-10-08T18:22:18+02:00 adjustments to avoid testing on non-amd64 - - - - - cec5373c by Michael R. Crusoe at 2020-10-08T18:22:23+02:00 Mark the remaining patches as not needing

[med-svn] [Git][med-team/picard-tools] Pushed new tag debian/2.23.4+dfsg-3

Michael R. Crusoe pushed new tag debian/2.23.4+dfsg-3 at Debian Med / picard-tools -- View it on GitLab: https://salsa.debian.org/med-team/picard-tools/-/tree/debian/2.23.4+dfsg-3 You're receiving this email because of your account on salsa.debia

[med-svn] [Git][med-team/trinityrnaseq][master] 2 commits: Enable more features and tests with r-cran-{argparse, dexseq} & tabix

Michael R. Crusoe pushed to branch master at Debian Med / trinityrnaseq Commits: c848a047 by Michael R. Crusoe at 2020-10-09T10:46:51+02:00 Enable more features and tests with r-cran-{argparse,dexseq} & tabix - - - - - c450962e by Michael R. Crusoe at 2020-10-09T15:17:31+02:00 release 2.

[med-svn] [Git][med-team/trinityrnaseq] Pushed new tag debian/2.11.0+dfsg-1

Michael R. Crusoe pushed new tag debian/2.11.0+dfsg-1 at Debian Med / trinityrnaseq -- View it on GitLab: https://salsa.debian.org/med-team/trinityrnaseq/-/tree/debian/2.11.0+dfsg-1 You're receiving this email because of your account on salsa.debia

[med-svn] [Git][med-team/qtltools] Pushed new tag debian/1.3.1+dfsg-1

Michael R. Crusoe pushed new tag debian/1.3.1+dfsg-1 at Debian Med / qtltools -- View it on GitLab: https://salsa.debian.org/med-team/qtltools/-/tree/debian/1.3.1+dfsg-1 You're receiving this email because of your account on salsa.debia

[med-svn] [Git][med-team/qtltools][master] 7 commits: debian/patches/Makefile_config.patch: refresh

Michael R. Crusoe pushed to branch master at Debian Med / qtltools Commits: 374470be by Michael R. Crusoe at 2020-10-10T17:58:44+02:00 debian/patches/Makefile_config.patch: refresh - - - - - 514b3e41 by Michael R. Crusoe at 2020-10-10T18:01:05+02:00 Fix uses-deprecated-adttmp debian/tests/run

[med-svn] [Git][med-team/trinityrnaseq] Pushed new tag debian/2.11.0+dfsg-2

Michael R. Crusoe pushed new tag debian/2.11.0+dfsg-2 at Debian Med / trinityrnaseq -- View it on GitLab: https://salsa.debian.org/med-team/trinityrnaseq/-/tree/debian/2.11.0+dfsg-2 You're receiving this email because of your account on salsa.debia

[med-svn] [Git][med-team/trinityrnaseq][master] 3 commits: Attempt to fix STAR test error

Michael R. Crusoe pushed to branch master at Debian Med / trinityrnaseq Commits: 8f89a482 by Michael R. Crusoe at 2020-10-12T14:36:42+02:00 Attempt to fix STAR test error - - - - - f842ea4f by Michael R. Crusoe at 2020-10-12T15:16:49+02:00 skip the STAR DTU test until a better fix is found

[med-svn] [Git][med-team/picard-tools][master] Mark libpicard-java-doc as Multi-Arch: foreign. Thanks multiarch hinter!

Michael R. Crusoe pushed to branch master at Debian Med / picard-tools Commits: 8ec4457c by Michael R. Crusoe at 2020-10-12T15:19:10+02:00 Mark libpicard-java-doc as Multi-Arch: foreign. Thanks multiarch hinter! - - - - - 2 changed files: - debian/changelog - debian/control Changes

[med-svn] [Git][med-team/picard-tools][master] blhc: ignore false positives with gradle + *ScriptTransformer

Michael R. Crusoe pushed to branch master at Debian Med / picard-tools Commits: b863f64a by Michael R. Crusoe at 2020-10-12T15:24:57+02:00 blhc: ignore false positives with gradle + *ScriptTransformer - - - - - 2 changed files: - debian/changelog - debian/rules Changes

[med-svn] [Git][med-team/trinityrnaseq][master] debian/tests/control: adjust so that the tests don't have to pass on archs where we don't build

Michael R. Crusoe pushed to branch master at Debian Med / trinityrnaseq Commits: 086073d8 by Michael R. Crusoe at 2020-10-13T15:00:17+02:00 debian/tests/control: adjust so that the tests don't have to pass on archs where we don't build - - - - - 2 changed files: - debian

[med-svn] [Git][med-team/mypy][pristine-tar] pristine-tar data for mypy_0.790.orig.tar.gz

Michael R. Crusoe pushed to branch pristine-tar at Debian Med / mypy Commits: cc76bb71 by Michael R. Crusoe at 2020-10-13T16:04:40+02:00 pristine-tar data for mypy_0.790.orig.tar.gz - - - - - 2 changed files: - + mypy_0.790.orig.tar.gz.delta - + mypy_0.790.orig.tar.gz.id Changes

[med-svn] [Git][med-team/mypy][upstream] New upstream version 0.790

Michael R. Crusoe pushed to branch upstream at Debian Med / mypy Commits: ee2d0536 by Michael R. Crusoe at 2020-10-13T16:04:29+02:00 New upstream version 0.790 - - - - - 30 changed files: - PKG-INFO - README.md - docs/source/command_line.rst - docs/source/common_issues.rst - docs/source

[med-svn] [Git][med-team/mypy] Pushed new tag upstream/0.790

Michael R. Crusoe pushed new tag upstream/0.790 at Debian Med / mypy -- View it on GitLab: https://salsa.debian.org/med-team/mypy/-/tree/upstream/0.790 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-c

[med-svn] [Git][med-team/mypy] Pushed new tag upstream/0.780.0.git20200606.8cc06b70829c885a6f9f2a9f989994c51693f23c

Michael R. Crusoe pushed new tag upstream/0.780.0.git20200606.8cc06b70829c885a6f9f2a9f989994c51693f23c at Debian Med / mypy -- View it on GitLab: https://salsa.debian.org/med-team/mypy/-/tree/upstream/0.780.0.git20200606.8cc06b70829c885a6f9f2a9f989994c51693f23c You're receiving this

[med-svn] [Git][med-team/mypy][master] 6 commits: routine-update: New upstream version

Michael R. Crusoe pushed to branch master at Debian Med / mypy Commits: 199696f4 by Michael R. Crusoe at 2020-10-13T16:04:28+02:00 routine-update: New upstream version - - - - - ee2d0536 by Michael R. Crusoe at 2020-10-13T16:04:29+02:00 New upstream version 0.790 - - - - - 56c7b568 by Michael

[med-svn] [Git][med-team/qtltools][master] 2 commits: Install the new files in appropriate locations.

Michael R. Crusoe pushed to branch master at Debian Med / qtltools Commits: 1bab2a47 by Michael R. Crusoe at 2020-10-13T15:40:32+02:00 Install the new files in appropriate locations. - - - - - 574bb232 by Michael R. Crusoe at 2020-10-13T17:56:42+02:00 release 1.3.1+dfsg-2 - - - - - 4

[med-svn] [Git][med-team/qtltools] Pushed new tag debian/1.3.1+dfsg-2

Michael R. Crusoe pushed new tag debian/1.3.1+dfsg-2 at Debian Med / qtltools -- View it on GitLab: https://salsa.debian.org/med-team/qtltools/-/tree/debian/1.3.1+dfsg-2 You're receiving this email because of your account on salsa.debia

[med-svn] [Git][med-team/mypy][master] 3 commits: tweak patch

Michael R. Crusoe pushed to branch master at Debian Med / mypy Commits: 8d81fb96 by Michael R. Crusoe at 2020-10-13T17:40:28+02:00 tweak patch - - - - - d7ade504 by Michael R. Crusoe at 2020-10-14T10:05:41+02:00 Disable self test until pytest >= 6.0 is in Debian - - - - - 7b4d679f by Mich

[med-svn] [Git][med-team/mypy] Pushed new tag debian/0.790-1

Michael R. Crusoe pushed new tag debian/0.790-1 at Debian Med / mypy -- View it on GitLab: https://salsa.debian.org/med-team/mypy/-/tree/debian/0.790-1 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-c

[med-svn] [Git][med-team/prokka] Pushed new tag debian/1.14.6+dfsg-2

Michael R. Crusoe pushed new tag debian/1.14.6+dfsg-2 at Debian Med / prokka -- View it on GitLab: https://salsa.debian.org/med-team/prokka/-/tree/debian/1.14.6+dfsg-2 You're receiving this email because of your account on salsa.debia

[med-svn] [Git][med-team/picard-tools][pristine-tar] pristine-tar data for picard-tools_2.23.7+dfsg.orig.tar.xz

Michael R. Crusoe pushed to branch pristine-tar at Debian Med / picard-tools Commits: f3641fef by Michael R. Crusoe at 2020-10-14T11:58:56+02:00 pristine-tar data for picard-tools_2.23.7+dfsg.orig.tar.xz - - - - - 2 changed files: - + picard-tools_2.23.7+dfsg.orig.tar.xz.delta - + picard

[med-svn] [Git][med-team/picard-tools] Pushed new tag upstream/2.23.7+dfsg

Michael R. Crusoe pushed new tag upstream/2.23.7+dfsg at Debian Med / picard-tools -- View it on GitLab: https://salsa.debian.org/med-team/picard-tools/-/tree/upstream/2.23.7+dfsg You're receiving this email because of your account on salsa.debia

[med-svn] [Git][med-team/picard-tools][upstream] New upstream version 2.23.7+dfsg

Michael R. Crusoe pushed to branch upstream at Debian Med / picard-tools Commits: 0f15f091 by Michael R. Crusoe at 2020-10-14T11:58:03+02:00 New upstream version 2.23.7+dfsg - - - - - 15 changed files: - Dockerfile - build_push_docker.sh - src/main/java/picard/analysis

[med-svn] [Git][med-team/picard-tools][master] 4 commits: routine-update: New upstream version

Michael R. Crusoe pushed to branch master at Debian Med / picard-tools Commits: db3f6ced by Michael R. Crusoe at 2020-10-14T11:58:00+02:00 routine-update: New upstream version - - - - - 0f15f091 by Michael R. Crusoe at 2020-10-14T11:58:03+02:00 New upstream version 2.23.7+dfsg

[med-svn] [Git][med-team/mypy] Pushed new tag debian/0.790-2

Michael R. Crusoe pushed new tag debian/0.790-2 at Debian Med / mypy -- View it on GitLab: https://salsa.debian.org/med-team/mypy/-/tree/debian/0.790-2 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-c

[med-svn] [Git][med-team/mypy][master] 2 commits: Cherry-pick Python3.9 patches from upstream

Michael R. Crusoe pushed to branch master at Debian Med / mypy Commits: 729015b7 by Michael R. Crusoe at 2020-10-14T12:31:06+02:00 Cherry-pick Python3.9 patches from upstream - - - - - af00356f by Michael R. Crusoe at 2020-10-14T12:31:31+02:00 release 0.790-2 - - - - - 4 changed files

[med-svn] [Git][med-team/trinityrnaseq] Pushed new tag debian/2.11.0+dfsg-3

Michael R. Crusoe pushed new tag debian/2.11.0+dfsg-3 at Debian Med / trinityrnaseq -- View it on GitLab: https://salsa.debian.org/med-team/trinityrnaseq/-/tree/debian/2.11.0+dfsg-3 You're receiving this email because of your account on salsa.debia

[med-svn] [Git][med-team/trinityrnaseq][master] routine-update: Ready to upload to unstable

Michael R. Crusoe pushed to branch master at Debian Med / trinityrnaseq Commits: 7996f063 by Michael R. Crusoe at 2020-10-24T17:14:03+02:00 routine-update: Ready to upload to unstable - - - - - 1 changed file: - debian/changelog Changes: = debian

[med-svn] [Git][med-team/libbio-procedural-perl][master] Import Debian changes 1.7.4-2

Michael R. Crusoe pushed to branch master at Debian Med / libbio-procedural-perl Commits: 48de205e by Michael R. Crusoe at 2020-10-24T17:18:38+02:00 Import Debian changes 1.7.4-2 libbio-procedural-perl (1.7.4-2) unstable; urgency=medium .. * No change source-only upload. - - - - - 2

[med-svn] [Git][med-team/libbio-procedural-perl] Pushed new tag debian/1.7.4-2

Michael R. Crusoe pushed new tag debian/1.7.4-2 at Debian Med / libbio-procedural-perl -- View it on GitLab: https://salsa.debian.org/med-team/libbio-procedural-perl/-/tree/debian/1.7.4-2 You're receiving this email because of your account on salsa.debia

[med-svn] [Git][med-team/libseqlib][master] 5 commits: fix pkg-config

Michael R. Crusoe pushed to branch master at Debian Med / libseqlib Commits: 92ffeb9b by Michael R. Crusoe at 2020-02-23T19:16:38+01:00 fix pkg-config - - - - - db1fbb03 by Michael R. Crusoe at 2020-10-24T17:20:13+02:00 routine-update: debhelper-compat 13 - - - - - 3be2c994 by Michael R

[med-svn] [Git][med-team/libseqlib] Pushed new tag debian/1.1.2+dfsg-7

Michael R. Crusoe pushed new tag debian/1.1.2+dfsg-7 at Debian Med / libseqlib -- View it on GitLab: https://salsa.debian.org/med-team/libseqlib/-/tree/debian/1.1.2+dfsg-7 You're receiving this email because of your account on salsa.debia

[med-svn] [Git][med-team/libbio-cluster-perl] Pushed new tag debian/1.7.3-5

Michael R. Crusoe pushed new tag debian/1.7.3-5 at Debian Med / libbio-cluster-perl -- View it on GitLab: https://salsa.debian.org/med-team/libbio-cluster-perl/-/tree/debian/1.7.3-5 You're receiving this email because of your account on salsa.debia

[med-svn] [Git][med-team/libbio-cluster-perl][master] 4 commits: routine-update: debhelper-compat 13

Michael R. Crusoe pushed to branch master at Debian Med / libbio-cluster-perl Commits: e2fa1060 by Michael R. Crusoe at 2020-10-24T17:20:05+02:00 routine-update: debhelper-compat 13 - - - - - 4d89e085 by Michael R. Crusoe at 2020-10-24T17:20:08+02:00 routine-update: Add salsa-ci file

[med-svn] [Git][med-team/rapmap][master] set Architecture: any

Michael R. Crusoe pushed to branch master at Debian Med / rapmap Commits: f154fcf3 by Michael R. Crusoe at 2020-10-24T17:51:54+02:00 set Architecture: any - - - - - 2 changed files: - debian/control - debian/patches/simde Changes: = debian/control

[med-svn] [Git][med-team/libseqlib] Pushed new tag debian/1.1.2+dfsg-8

Michael R. Crusoe pushed new tag debian/1.1.2+dfsg-8 at Debian Med / libseqlib -- View it on GitLab: https://salsa.debian.org/med-team/libseqlib/-/tree/debian/1.1.2+dfsg-8 You're receiving this email because of your account on salsa.debia

[med-svn] [Git][med-team/prokka] Pushed new tag debian/1.14.6+dfsg-3

Michael R. Crusoe pushed new tag debian/1.14.6+dfsg-3 at Debian Med / prokka -- View it on GitLab: https://salsa.debian.org/med-team/prokka/-/tree/debian/1.14.6+dfsg-3 You're receiving this email because of your account on salsa.debia

[med-svn] [Git][med-team/prokka][master] 2 commits: Prokka is effectively amd64 only, due to its dependencies.

Michael R. Crusoe pushed to branch master at Debian Med / prokka Commits: 0e3bb522 by Michael R. Crusoe at 2020-10-26T16:15:27+01:00 Prokka is effectively amd64 only, due to its dependencies. - - - - - 2a0c7d20 by Michael R. Crusoe at 2020-10-26T16:16:46+01:00 release 1.14.6+dfsg-3

[med-svn] [Git][med-team/libseqlib] Pushed new tag debian/1.1.2+dfsg-9

Michael R. Crusoe pushed new tag debian/1.1.2+dfsg-9 at Debian Med / libseqlib -- View it on GitLab: https://salsa.debian.org/med-team/libseqlib/-/tree/debian/1.1.2+dfsg-9 You're receiving this email because of your account on salsa.debia

[med-svn] [Git][med-team/bedtools][master] 6 commits: Include patch from Bernhard Übelacker to fix 32-bit builds (Closes: #955403)

Michael R. Crusoe pushed to branch master at Debian Med / bedtools Commits: ec128e29 by Michael R. Crusoe at 2020-10-28T12:28:13+01:00 Include patch from Bernhard Übelacker to fix 32-bit builds (Closes: #955403) - - - - - 0723ef8b by Michael R. Crusoe at 2020-10-28T12:28:43+01:00 routine

[med-svn] [Git][med-team/maxflow][master] Apply multi-arch hints.

Michael R. Crusoe pushed to branch master at Debian Med / maxflow Commits: 0c5fd28e by Debian Janitor at 2020-10-27T04:07:54+00:00 Apply multi-arch hints. + libmaxflow-dev, libmaxflow0: Add Multi-Arch: same. Changes-By: apply-multiarch-hints - - - - - 1 changed file: - debian/control

[med-svn] [Git][med-team/maxflow][master] 2 commits: debian/copyright: use spaces rather than tabs to start continuation lines.

Michael R. Crusoe pushed to branch master at Debian Med / maxflow Commits: 9a4f748c by Debian Janitor at 2020-10-29T21:00:24+00:00 debian/copyright: use spaces rather than tabs to start continuation lines.. Changes-By: lintian-brush Fixes: lintian: tab-in-license-text See-also: https

[med-svn] [Git][med-team/kalign] Pushed new tag debian/1%3.3-1

Michael R. Crusoe pushed new tag debian/1%3.3-1 at Debian Med / kalign -- View it on GitLab: https://salsa.debian.org/med-team/kalign/-/tree/debian/1%253.3-1 You're receiving this email because of your account on salsa.debian.org. ___ debia

[med-svn] [Git][med-team/kalign][upstream] New upstream version 3.3

Michael R. Crusoe pushed to branch upstream at Debian Med / kalign Commits: abbae427 by Michael R. Crusoe at 2020-11-06T09:32:21+01:00 New upstream version 3.3 - - - - - 27 changed files: - .github/workflows/ccpp.yml - + .github/workflows/codeql-analysis.yml - ChangeLog - README.md

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