[med-svn] [Git][med-team/python-easydev][master] Remove myself from Uploaders
Afif Elghraoui pushed to branch master at Debian Med / python-easydev Commits: 3dc88cdd by Afif Elghraoui at 2019-02-07T06:09:54Z Remove myself from Uploaders - - - - - 1 changed file: - debian/control Changes: = debian/control = @@ -1,6 +1,5 @@ Source: python-easydev Maintainer: Debian Med Packaging Team -Uploaders: Afif Elghraoui Section: python Testsuite: autopkgtest-pkg-python Priority: optional View it on GitLab: https://salsa.debian.org/med-team/python-easydev/commit/3dc88cdd01794b32b82aa6bee866c66611c97896 -- View it on GitLab: https://salsa.debian.org/med-team/python-easydev/commit/3dc88cdd01794b32b82aa6bee866c66611c97896 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/python-colormap][master] Remove myself from Uploaders
Afif Elghraoui pushed to branch master at Debian Med / python-colormap Commits: 025acb26 by Afif Elghraoui at 2019-02-07T06:09:10Z Remove myself from Uploaders - - - - - 1 changed file: - debian/control Changes: = debian/control = @@ -1,6 +1,5 @@ Source: python-colormap Maintainer: Debian Med Packaging Team -Uploaders: Afif Elghraoui Section: python Testsuite: autopkgtest-pkg-python Priority: optional View it on GitLab: https://salsa.debian.org/med-team/python-colormap/commit/025acb26b26faff59e81816fc09bd4e5f2e3443e -- View it on GitLab: https://salsa.debian.org/med-team/python-colormap/commit/025acb26b26faff59e81816fc09bd4e5f2e3443e You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/sprai][master] Remove myself from Uploaders
Afif Elghraoui pushed to branch master at Debian Med / sprai Commits: 9a7cdc22 by Afif Elghraoui at 2019-02-07T06:08:06Z Remove myself from Uploaders - - - - - 1 changed file: - debian/control Changes: = debian/control = @@ -1,6 +1,5 @@ Source: sprai Maintainer: Debian Med Packaging Team -Uploaders: Afif Elghraoui Section: science Priority: optional Build-Depends: debhelper (>= 11~), View it on GitLab: https://salsa.debian.org/med-team/sprai/commit/9a7cdc2202a2625d1407418824f5caa6eafd41e6 -- View it on GitLab: https://salsa.debian.org/med-team/sprai/commit/9a7cdc2202a2625d1407418824f5caa6eafd41e6 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/sniffles][master] Remove myself from Uploaders
Afif Elghraoui pushed to branch master at Debian Med / sniffles Commits: 1898e20b by Afif Elghraoui at 2019-02-07T06:07:09Z Remove myself from Uploaders - - - - - 1 changed file: - debian/control Changes: = debian/control = @@ -1,6 +1,5 @@ Source: sniffles Maintainer: Debian Med Packaging Team -Uploaders: Afif Elghraoui Section: science Priority: optional Build-Depends: debhelper (>= 12~), View it on GitLab: https://salsa.debian.org/med-team/sniffles/commit/1898e20b72e19eabcfed74e3e812e00c5b922ed2 -- View it on GitLab: https://salsa.debian.org/med-team/sniffles/commit/1898e20b72e19eabcfed74e3e812e00c5b922ed2 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/smrtanalysis][master] Remove myself from Uploaders
Afif Elghraoui pushed to branch master at Debian Med / smrtanalysis Commits: d25eddc1 by Afif Elghraoui at 2019-02-07T06:06:23Z Remove myself from Uploaders - - - - - 1 changed file: - debian/control Changes: = debian/control = @@ -1,6 +1,5 @@ Source: smrtanalysis Maintainer: Debian Med Packaging Team -Uploaders: Afif Elghraoui Section: science Priority: optional Build-Depends: debhelper (>= 11~) View it on GitLab: https://salsa.debian.org/med-team/smrtanalysis/commit/d25eddc1eecca4c414c5d74af2eb3602efabb1b5 -- View it on GitLab: https://salsa.debian.org/med-team/smrtanalysis/commit/d25eddc1eecca4c414c5d74af2eb3602efabb1b5 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/python-intervaltree-bio][master] Remove myself from Uploaders
Afif Elghraoui pushed to branch master at Debian Med / python-intervaltree-bio Commits: 8d67f442 by Afif Elghraoui at 2019-02-07T06:03:38Z Remove myself from Uploaders - - - - - 1 changed file: - debian/control Changes: = debian/control = @@ -1,6 +1,5 @@ Source: python-intervaltree-bio Maintainer: Debian Med Packaging Team -Uploaders: Afif Elghraoui Section: python Priority: optional Build-Depends: debhelper (>= 12~), View it on GitLab: https://salsa.debian.org/med-team/python-intervaltree-bio/commit/8d67f44247627da8b2af68db40986150a42fd7dc -- View it on GitLab: https://salsa.debian.org/med-team/python-intervaltree-bio/commit/8d67f44247627da8b2af68db40986150a42fd7dc You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/python-pysam][master] Remove myself from Uploaders
Afif Elghraoui pushed to branch master at Debian Med / python-pysam Commits: 31bd2f0b by Afif Elghraoui at 2019-02-07T06:01:50Z Remove myself from Uploaders - - - - - 1 changed file: - debian/control Changes: = debian/control = @@ -2,7 +2,6 @@ Source: python-pysam Maintainer: Debian Med Packaging Team Uploaders: Charles Plessy , Andreas Tille , - Afif Elghraoui Section: python Testsuite: autopkgtest-pkg-python Priority: optional View it on GitLab: https://salsa.debian.org/med-team/python-pysam/commit/31bd2f0b5d90bac9eadf413fa94d7909fe2de6f7 -- View it on GitLab: https://salsa.debian.org/med-team/python-pysam/commit/31bd2f0b5d90bac9eadf413fa94d7909fe2de6f7 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/python-pymummer][master] Remove myself from Uploaders
Afif Elghraoui pushed to branch master at Debian Med / python-pymummer Commits: 9f15cfcd by Afif Elghraoui at 2019-02-07T05:59:05Z Remove myself from Uploaders - - - - - 1 changed file: - debian/control Changes: = debian/control = @@ -1,6 +1,5 @@ Source: python-pymummer Maintainer: Debian Med Packaging Team -Uploaders: Afif Elghraoui Section: python Testsuite: autopkgtest-pkg-python Priority: optional View it on GitLab: https://salsa.debian.org/med-team/python-pymummer/commit/9f15cfcd742e137779d9bad542d02b0f29e29b2f -- View it on GitLab: https://salsa.debian.org/med-team/python-pymummer/commit/9f15cfcd742e137779d9bad542d02b0f29e29b2f You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/python-bx][master] Remove myself from Uploaders
Afif Elghraoui pushed to branch master at Debian Med / python-bx Commits: 6f027516 by Afif Elghraoui at 2019-02-07T05:56:55Z Remove myself from Uploaders - - - - - 1 changed file: - debian/control Changes: = debian/control = @@ -2,7 +2,8 @@ Source: python-bx Section: python Priority: optional Maintainer: Debian Med Packaging Team -Uploaders: Afif Elghraoui , Steffen Moeller , Michael Crusoe +Uploaders: Steffen Moeller , + Michael Crusoe Build-Depends: debhelper (>= 9), dh-python, View it on GitLab: https://salsa.debian.org/med-team/python-bx/commit/6f027516b60b06a62249ce405b98dbc87ac7a8cd -- View it on GitLab: https://salsa.debian.org/med-team/python-bx/commit/6f027516b60b06a62249ce405b98dbc87ac7a8cd You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/piler][master] Remove myself from Uploaders
Afif Elghraoui pushed to branch master at Debian Med / piler Commits: 5af6148f by Afif Elghraoui at 2019-02-07T05:54:46Z Remove myself from Uploaders - - - - - 1 changed file: - debian/control Changes: = debian/control = @@ -1,6 +1,5 @@ Source: piler Maintainer: Debian Med Packaging Team -Uploaders: Afif Elghraoui Section: science Priority: optional Build-Depends: debhelper (>= 11~) View it on GitLab: https://salsa.debian.org/med-team/piler/commit/5af6148f7202a4ecbc42f8da6c6506bd56cd5c07 -- View it on GitLab: https://salsa.debian.org/med-team/piler/commit/5af6148f7202a4ecbc42f8da6c6506bd56cd5c07 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/phyx][master] Remove myself from Uploaders
Afif Elghraoui pushed to branch master at Debian Med / phyx Commits: 2257fcdd by Afif Elghraoui at 2019-02-07T05:54:02Z Remove myself from Uploaders - - - - - 1 changed file: - debian/control Changes: = debian/control = @@ -1,7 +1,6 @@ Source: phyx Maintainer: Debian Med Packaging Team -Uploaders: Afif Elghraoui , - Andreas Tille +Uploaders: Andreas Tille Section: science Priority: optional Build-Depends: debhelper (>= 11~), View it on GitLab: https://salsa.debian.org/med-team/phyx/commit/2257fcdd388f4f2c8cac82ec8a5d13541ccc7cbc -- View it on GitLab: https://salsa.debian.org/med-team/phyx/commit/2257fcdd388f4f2c8cac82ec8a5d13541ccc7cbc You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/pbsuite][master] Remove myself from Uploaders
Afif Elghraoui pushed to branch master at Debian Med / pbsuite Commits: aebcb8cf by Afif Elghraoui at 2019-02-07T05:52:16Z Remove myself from Uploaders - - - - - 1 changed file: - debian/control Changes: = debian/control = @@ -1,6 +1,5 @@ Source: pbsuite Maintainer: Debian Med Packaging Team -Uploaders: Afif Elghraoui Section: science Priority: optional Build-Depends: debhelper (>= 11~), View it on GitLab: https://salsa.debian.org/med-team/pbsuite/commit/aebcb8cf0d63d924d22245e5d2ecfc01c4883a0c -- View it on GitLab: https://salsa.debian.org/med-team/pbsuite/commit/aebcb8cf0d63d924d22245e5d2ecfc01c4883a0c You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/mhap][master] Remove myself from Uploaders
Afif Elghraoui pushed to branch master at Debian Med / mhap Commits: 28ab5077 by Afif Elghraoui at 2019-02-07T05:51:14Z Remove myself from Uploaders - - - - - 1 changed file: - debian/control Changes: = debian/control = @@ -1,6 +1,5 @@ Source: mhap Maintainer: Debian Med Packaging Team -Uploaders: Afif Elghraoui Section: science Priority: optional Build-Depends: debhelper (>= 11~), View it on GitLab: https://salsa.debian.org/med-team/mhap/commit/28ab5077efa57366977b7d51330e74146c516327 -- View it on GitLab: https://salsa.debian.org/med-team/mhap/commit/28ab5077efa57366977b7d51330e74146c516327 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/mauve-aligner][master] Remove myself from Uploaders
Afif Elghraoui pushed to branch master at Debian Med / mauve-aligner Commits: 1f2cff76 by Afif Elghraoui at 2019-02-07T05:50:25Z Remove myself from Uploaders - - - - - 1 changed file: - debian/control Changes: = debian/control = @@ -1,7 +1,6 @@ Source: mauve-aligner Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille , - Afif Elghraoui Section: science Priority: optional Build-Depends: debhelper (>= 11~), View it on GitLab: https://salsa.debian.org/med-team/mauve-aligner/commit/1f2cff76478a0f90ff5930b88e6e309423915b3e -- View it on GitLab: https://salsa.debian.org/med-team/mauve-aligner/commit/1f2cff76478a0f90ff5930b88e6e309423915b3e You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/hinge][master] Remove myself from Uploaders
Afif Elghraoui pushed to branch master at Debian Med / hinge Commits: 166303bb by Afif Elghraoui at 2019-02-07T05:49:27Z Remove myself from Uploaders - - - - - 1 changed file: - debian/control Changes: = debian/control = @@ -1,6 +1,5 @@ Source: hinge Maintainer: Debian Med Packaging Team -Uploaders: Afif Elghraoui Section: science Priority: optional Build-Depends: debhelper (>= 12~), View it on GitLab: https://salsa.debian.org/med-team/hinge/commit/166303bb54b1e0e113d13a9286cd1635ec074d57 -- View it on GitLab: https://salsa.debian.org/med-team/hinge/commit/166303bb54b1e0e113d13a9286cd1635ec074d57 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/poretools][master] Remove myself from Uploaders
Afif Elghraoui pushed to branch master at Debian Med / poretools Commits: 9f6d6dc9 by Afif Elghraoui at 2019-02-07T05:48:19Z Remove myself from Uploaders - - - - - 1 changed file: - debian/control Changes: = debian/control = @@ -1,6 +1,5 @@ Source: poretools Maintainer: Debian Med Packaging Team -Uploaders: Afif Elghraoui Section: science Priority: optional Build-Depends: debhelper (>= 11~), View it on GitLab: https://salsa.debian.org/med-team/poretools/commit/9f6d6dc9b18c2a3db6573f1f8245bc450dd352cc -- View it on GitLab: https://salsa.debian.org/med-team/poretools/commit/9f6d6dc9b18c2a3db6573f1f8245bc450dd352cc You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/nanopolish][master] Remove myself from Uploaders
Afif Elghraoui pushed to branch master at Debian Med / nanopolish Commits: 935c1508 by Afif Elghraoui at 2019-02-07T05:45:26Z Remove myself from Uploaders - - - - - 1 changed file: - debian/control Changes: = debian/control = @@ -1,6 +1,5 @@ Source: nanopolish Maintainer: Debian Med Packaging Team -Uploaders: Afif Elghraoui Section: science Priority: optional Build-Depends: debhelper (>= 12~), View it on GitLab: https://salsa.debian.org/med-team/nanopolish/commit/935c150866b2ee9cff4e9ca6701cc3b741f5d19a -- View it on GitLab: https://salsa.debian.org/med-team/nanopolish/commit/935c150866b2ee9cff4e9ca6701cc3b741f5d19a You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/fast5][master] Remove myself from Uploaders
Afif Elghraoui pushed to branch master at Debian Med / fast5 Commits: 0a35e90b by Afif Elghraoui at 2019-02-07T05:41:47Z Remove myself from Uploaders - - - - - 1 changed file: - debian/control Changes: = debian/control = @@ -1,6 +1,5 @@ Source: fast5 Maintainer: Debian Med Packaging Team -Uploaders: Afif Elghraoui Section: science Priority: optional Build-Depends: debhelper (>= 11), View it on GitLab: https://salsa.debian.org/med-team/fast5/commit/0a35e90b4592eee173596f581048a198d7fe8c09 -- View it on GitLab: https://salsa.debian.org/med-team/fast5/commit/0a35e90b4592eee173596f581048a198d7fe8c09 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/dascrubber][master] Remove myself from Uploaders
Afif Elghraoui pushed to branch master at Debian Med / dascrubber Commits: a0bfd5af by Afif Elghraoui at 2019-02-07T05:39:50Z Remove myself from Uploaders - - - - - 1 changed file: - debian/control Changes: = debian/control = @@ -1,6 +1,5 @@ Source: dascrubber Maintainer: Debian Med Packaging Team -Uploaders: Afif Elghraoui Section: science Priority: optional Build-Depends: debhelper (>= 11~) View it on GitLab: https://salsa.debian.org/med-team/dascrubber/commit/a0bfd5af082a14fa4e4c3442b4ef1c4f288fb48a -- View it on GitLab: https://salsa.debian.org/med-team/dascrubber/commit/a0bfd5af082a14fa4e4c3442b4ef1c4f288fb48a You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/daligner][master] Remove myself from Uploaders
Afif Elghraoui pushed to branch master at Debian Med / daligner Commits: 96256316 by Afif Elghraoui at 2019-02-07T05:39:12Z Remove myself from Uploaders - - - - - 1 changed file: - debian/control Changes: = debian/control = @@ -1,6 +1,5 @@ Source: daligner Maintainer: Debian Med Packaging Team -Uploaders: Afif Elghraoui Section: science Priority: optional Build-Depends: debhelper (>= 11~) View it on GitLab: https://salsa.debian.org/med-team/daligner/commit/96256316a7fffc3e16ee06c99ca2128150ef659a -- View it on GitLab: https://salsa.debian.org/med-team/daligner/commit/96256316a7fffc3e16ee06c99ca2128150ef659a You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/dazzdb][master] Remove myself from Uploaders
Afif Elghraoui pushed to branch master at Debian Med / dazzdb Commits: 818e2278 by Afif Elghraoui at 2019-02-07T05:38:26Z Remove myself from Uploaders - - - - - 1 changed file: - debian/control Changes: = debian/control = @@ -1,6 +1,5 @@ Source: dazzdb Maintainer: Debian Med Packaging Team -Uploaders: Afif Elghraoui Section: science Priority: optional Build-Depends: debhelper (>= 11~), View it on GitLab: https://salsa.debian.org/med-team/dazzdb/commit/818e22783c0d22cdf8c25f39a4c1776fcf5e0046 -- View it on GitLab: https://salsa.debian.org/med-team/dazzdb/commit/818e22783c0d22cdf8c25f39a4c1776fcf5e0046 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/circlator][master] Remove myself from Uploaders
Afif Elghraoui pushed to branch master at Debian Med / circlator Commits: bed53bd4 by Afif Elghraoui at 2019-02-07T05:37:31Z Remove myself from Uploaders - - - - - 1 changed file: - debian/control Changes: = debian/control = @@ -1,6 +1,5 @@ Source: circlator Maintainer: Debian Med Packaging Team -Uploaders: Afif Elghraoui Section: science Priority: optional Build-Depends: debhelper (>= 12~), View it on GitLab: https://salsa.debian.org/med-team/circlator/commit/bed53bd47ea848c194a4e7148890c2c9d4e41215 -- View it on GitLab: https://salsa.debian.org/med-team/circlator/commit/bed53bd47ea848c194a4e7148890c2c9d4e41215 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/canu][master] Remove myself from Uploaders
Afif Elghraoui pushed to branch master at Debian Med / canu Commits: 85bdd143 by Afif Elghraoui at 2019-02-07T05:36:35Z Remove myself from Uploaders - - - - - 1 changed file: - debian/control Changes: = debian/control = @@ -1,6 +1,5 @@ Source: canu Maintainer: Debian Med Packaging Team -Uploaders: Afif Elghraoui Section: science Priority: optional Build-Depends: debhelper (>= 11~), View it on GitLab: https://salsa.debian.org/med-team/canu/commit/85bdd1431feef30e72478a7d5f37066ff3602b44 -- View it on GitLab: https://salsa.debian.org/med-team/canu/commit/85bdd1431feef30e72478a7d5f37066ff3602b44 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/scoary][master] Remove myself from Uploaders
Afif Elghraoui pushed to branch master at Debian Med / scoary Commits: 902691ea by Afif Elghraoui at 2019-02-07T05:34:03Z Remove myself from Uploaders - - - - - 1 changed file: - debian/control Changes: = debian/control = @@ -1,7 +1,6 @@ Source: scoary Maintainer: Debian Med Packaging Team -Uploaders: Afif Elghraoui , - Andreas Tille +Uploaders: Andreas Tille Section: science Priority: optional Build-Depends: debhelper (>=9), View it on GitLab: https://salsa.debian.org/med-team/scoary/commit/902691ea72f00079155953988bae8a0b3103aa0f -- View it on GitLab: https://salsa.debian.org/med-team/scoary/commit/902691ea72f00079155953988bae8a0b3103aa0f You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/unanimity][master] Remove myself from Uploaders
Afif Elghraoui pushed to branch master at Debian Med / unanimity Commits: dce593cb by Afif Elghraoui at 2019-02-07T05:33:11Z Remove myself from Uploaders - - - - - 1 changed file: - debian/control Changes: = debian/control = @@ -1,7 +1,6 @@ Source: unanimity Maintainer: Debian Med Packaging Team -Uploaders: Afif Elghraoui , - Andreas Tille +Uploaders: Andreas Tille Section: science Testsuite: autopkgtest-pkg-python Priority: optional View it on GitLab: https://salsa.debian.org/med-team/unanimity/commit/dce593cbb7bba907149488004ca4438a33857e54 -- View it on GitLab: https://salsa.debian.org/med-team/unanimity/commit/dce593cbb7bba907149488004ca4438a33857e54 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/python-pbcore][master] Remove myself from Uploaders
Afif Elghraoui pushed to branch master at Debian Med / python-pbcore Commits: 056349fa by Afif Elghraoui at 2019-02-07T05:31:48Z Remove myself from Uploaders - - - - - 1 changed file: - debian/control Changes: = debian/control = @@ -1,6 +1,5 @@ Source: python-pbcore Maintainer: Debian Med Packaging Team -Uploaders: Afif Elghraoui Section: python Priority: optional Build-Depends: debhelper (>= 12), View it on GitLab: https://salsa.debian.org/med-team/python-pbcore/commit/056349fadafeb87ce226c4110068df9c9d117238 -- View it on GitLab: https://salsa.debian.org/med-team/python-pbcore/commit/056349fadafeb87ce226c4110068df9c9d117238 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/python-pbcommand][master] Remove myself from Uploaders
Afif Elghraoui pushed to branch master at Debian Med / python-pbcommand Commits: b40932fe by Afif Elghraoui at 2019-02-07T05:30:50Z Remove myself from Uploaders - - - - - 1 changed file: - debian/control Changes: = debian/control = @@ -1,6 +1,5 @@ Source: python-pbcommand Maintainer: Debian Med Packaging Team -Uploaders: Afif Elghraoui Section: python Priority: optional Build-Depends: debhelper (>= 11~), View it on GitLab: https://salsa.debian.org/med-team/python-pbcommand/commit/b40932fe5bfb6ccc34f9c8808e4535d6692b -- View it on GitLab: https://salsa.debian.org/med-team/python-pbcommand/commit/b40932fe5bfb6ccc34f9c8808e4535d6692b You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/pbseqlib][master] Remove myself from Uploaders
Afif Elghraoui pushed to branch master at Debian Med / pbseqlib Commits: 83834fb2 by Afif Elghraoui at 2019-02-07T05:29:52Z Remove myself from Uploaders - - - - - 1 changed file: - debian/control Changes: = debian/control = @@ -1,6 +1,5 @@ Source: pbseqlib Maintainer: Debian Med Packaging Team -Uploaders: Afif Elghraoui Section: libs Priority: optional Build-Depends: debhelper (>= 12~), View it on GitLab: https://salsa.debian.org/med-team/pbseqlib/commit/83834fb2193e02a045898b7c28d3f41f52f43ebb -- View it on GitLab: https://salsa.debian.org/med-team/pbseqlib/commit/83834fb2193e02a045898b7c28d3f41f52f43ebb You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/pbh5tools][master] Remove myself from Uploaders
Afif Elghraoui pushed to branch master at Debian Med / pbh5tools Commits: b79e9398 by Afif Elghraoui at 2019-02-07T05:28:52Z Remove myself from Uploaders - - - - - 1 changed file: - debian/control Changes: = debian/control = @@ -1,6 +1,5 @@ Source: pbh5tools Maintainer: Debian Med Packaging Team -Uploaders: Afif Elghraoui Section: science Priority: optional Build-Depends: debhelper (>= 11~), View it on GitLab: https://salsa.debian.org/med-team/pbh5tools/commit/b79e93981e060289cfc7a7b11d0bc2e13b7678b5 -- View it on GitLab: https://salsa.debian.org/med-team/pbh5tools/commit/b79e93981e060289cfc7a7b11d0bc2e13b7678b5 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/pbgenomicconsensus][master] Remove myself from Uploaders
Afif Elghraoui pushed to branch master at Debian Med / pbgenomicconsensus Commits: ccb38ada by Afif Elghraoui at 2019-02-07T05:26:42Z Remove myself from Uploaders - - - - - 1 changed file: - debian/control Changes: = debian/control = @@ -1,6 +1,5 @@ Source: pbgenomicconsensus Maintainer: Debian Med Packaging Team -Uploaders: Afif Elghraoui Section: science Priority: optional Build-Depends: debhelper (>= 12~), View it on GitLab: https://salsa.debian.org/med-team/pbgenomicconsensus/commit/ccb38ada11005cf128b8bfef5365240759fd9ae8 -- View it on GitLab: https://salsa.debian.org/med-team/pbgenomicconsensus/commit/ccb38ada11005cf128b8bfef5365240759fd9ae8 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/pbdagcon][master] Remove myself from Uploaders
Afif Elghraoui pushed to branch master at Debian Med / pbdagcon Commits: 20b06975 by Afif Elghraoui at 2019-02-07T05:25:55Z Remove myself from Uploaders - - - - - 1 changed file: - debian/control Changes: = debian/control = @@ -1,6 +1,5 @@ Source: pbdagcon Maintainer: Debian Med Packaging Team -Uploaders: Afif Elghraoui Section: science Priority: optional Build-Depends: debhelper (>= 12~), View it on GitLab: https://salsa.debian.org/med-team/pbdagcon/commit/20b0697560d4487f0604a5579cc8f924eaca92fb -- View it on GitLab: https://salsa.debian.org/med-team/pbdagcon/commit/20b0697560d4487f0604a5579cc8f924eaca92fb You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/pbcopper][master] Remove myself from Uploaders
Afif Elghraoui pushed to branch master at Debian Med / pbcopper Commits: dac79469 by Afif Elghraoui at 2019-02-07T05:25:06Z Remove myself from Uploaders - - - - - 1 changed file: - debian/control Changes: = debian/control = @@ -1,6 +1,5 @@ Source: pbcopper Maintainer: Debian Med Packaging Team -Uploaders: Afif Elghraoui Section: libs Priority: optional Build-Depends: debhelper (>= 11~), View it on GitLab: https://salsa.debian.org/med-team/pbcopper/commit/dac794690c869b2355fb70a4f397a550cd0063ac -- View it on GitLab: https://salsa.debian.org/med-team/pbcopper/commit/dac794690c869b2355fb70a4f397a550cd0063ac You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/pbbarcode][master] Remove myself from Uploaders
Afif Elghraoui pushed to branch master at Debian Med / pbbarcode Commits: a7b8bcbe by Afif Elghraoui at 2019-02-07T05:24:05Z Remove myself from Uploaders - - - - - 1 changed file: - debian/control Changes: = debian/control = @@ -1,6 +1,5 @@ Source: pbbarcode Maintainer: Debian Med Packaging Team -Uploaders: Afif Elghraoui Section: science Priority: optional Build-Depends: debhelper (>= 11~), View it on GitLab: https://salsa.debian.org/med-team/pbbarcode/commit/a7b8bcbe448dae5a2866e51c03de674c7447a239 -- View it on GitLab: https://salsa.debian.org/med-team/pbbarcode/commit/a7b8bcbe448dae5a2866e51c03de674c7447a239 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/pbbam][master] Remove myself from Uploaders
Afif Elghraoui pushed to branch master at Debian Med / pbbam Commits: 616ea2c9 by Afif Elghraoui at 2019-02-07T05:23:11Z Remove myself from Uploaders - - - - - 1 changed file: - debian/control Changes: = debian/control = @@ -1,6 +1,5 @@ Source: pbbam Maintainer: Debian Med Packaging Team -Uploaders: Afif Elghraoui Section: science Priority: optional Build-Depends: debhelper (>= 12~), View it on GitLab: https://salsa.debian.org/med-team/pbbam/commit/616ea2c9c4bfe3891976561067fa2f50041667f1 -- View it on GitLab: https://salsa.debian.org/med-team/pbbam/commit/616ea2c9c4bfe3891976561067fa2f50041667f1 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/pbalign][debian/jessie-backports] 13 commits: Imported Upstream version 0.3.0
Afif Elghraoui pushed to branch debian/jessie-backports at Debian Med / pbalign Commits: e5305172 by Afif Elghraoui at 2016-12-24T01:14:01Z Imported Upstream version 0.3.0 - - - - - 32216481 by Afif Elghraoui at 2016-12-24T01:14:06Z Merge tag upstream/0.3.0 Upstream version 0.3.0 - - - - - 914bcf1a by Afif Elghraoui at 2016-12-24T01:25:25Z Readability improvements and clean-ups in d/control and d/rules - - - - - 59f9d8ca by Afif Elghraoui at 2016-12-24T01:26:33Z Update email address and copyright year - - - - - 5f1351ce by Afif Elghraoui at 2016-12-24T01:27:11Z Bump Standards-Version to 3.9.8 - - - - - 4a6bd5c2 by Afif Elghraoui at 2016-12-24T01:27:37Z Use encrypted protocols for VCS URLs - - - - - 3120bb9a by Afif Elghraoui at 2016-12-24T02:16:07Z Add build-dependency on pbcommand - - - - - 3059f761 by Afif Elghraoui at 2016-12-24T02:16:43Z Prepare new revision - - - - - 84650c64 by Afif Elghraoui at 2017-01-03T00:07:02Z Drop patch applied upstream - - - - - e7e6a316 by Afif Elghraoui at 2017-01-03T00:15:05Z Dont install LICENSES file - - - - - 73b40cd4 by Afif Elghraoui at 2017-01-15T23:45:48Z Set blasr minimum version - - - - - 83f451cd by Afif Elghraoui at 2017-01-15T23:50:12Z releasing package pbalign version 0.3.0-1 - - - - - 2a86560c by Afif Elghraoui at 2017-04-26T06:13:39Z Merge tag debian/0.3.0-1 into debian/jessie-backports tagging package pbalign version debian/0.3.0-1 - - - - - 30 changed files: - LICENSES.txt - Makefile - README.md - debian/changelog - debian/control - debian/copyright - debian/docs - − debian/patches/make-doc - − debian/patches/series - debian/rules - doc/howto.rst - pbalign/__init__.py - pbalign/alignservice/align.py - pbalign/alignservice/blasr.py - pbalign/forquiverservice/loadpulses.py → pbalign/bampostservice.py - + pbalign/ccs.py - pbalign/filterservice.py - − pbalign/forquiverservice/__init__.py - − pbalign/forquiverservice/forquiver.py - − pbalign/forquiverservice/loadchemistry.py - − pbalign/forquiverservice/repack.py - − pbalign/forquiverservice/sort.py - pbalign/options.py - pbalign/pbalignfiles.py - pbalign/pbalignrunner.py - + pbalign/tasks/__init__.py - + pbalign/tasks/consolidate_alignments.py - pbalign/tools/createChemistryHeader.py - pbalign/utils/fileutil.py - pbalign/utils/progutil.py The diff was not included because it is too large. View it on GitLab: https://salsa.debian.org/med-team/pbalign/compare/c555a02c9c9317132513965dc8c2bf8abdbed7f2...2a86560ceb500ba4a4cde2bb8dad08f4fb961440 -- View it on GitLab: https://salsa.debian.org/med-team/pbalign/compare/c555a02c9c9317132513965dc8c2bf8abdbed7f2...2a86560ceb500ba4a4cde2bb8dad08f4fb961440 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/pbalign][master] Remove myself from Uploaders
Afif Elghraoui pushed to branch master at Debian Med / pbalign Commits: 735b4bb8 by Afif Elghraoui at 2019-02-07T05:21:54Z Remove myself from Uploaders - - - - - 1 changed file: - debian/control Changes: = debian/control = @@ -1,6 +1,5 @@ Source: pbalign Maintainer: Debian Med Packaging Team -Uploaders: Afif Elghraoui Section: python Testsuite: autopkgtest-pkg-python Priority: optional View it on GitLab: https://salsa.debian.org/med-team/pbalign/commit/735b4bb86aa83308bbac499c1ee23a1e4f95177b -- View it on GitLab: https://salsa.debian.org/med-team/pbalign/commit/735b4bb86aa83308bbac499c1ee23a1e4f95177b You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/kineticstools][master] Remove myself from Uploaders
Afif Elghraoui pushed to branch master at Debian Med / kineticstools Commits: 91149dbb by Afif Elghraoui at 2019-02-07T05:19:47Z Remove myself from Uploaders - - - - - 1 changed file: - debian/control Changes: = debian/control = @@ -1,6 +1,5 @@ Source: kineticstools Maintainer: Debian Med Packaging Team -Uploaders: Afif Elghraoui Section: science Priority: optional Build-Depends: debhelper (>= 12~), View it on GitLab: https://salsa.debian.org/med-team/kineticstools/commit/91149dbb8d8b433feca66ba5d325530cf1c67e2e -- View it on GitLab: https://salsa.debian.org/med-team/kineticstools/commit/91149dbb8d8b433feca66ba5d325530cf1c67e2e You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/falcon][master] Remove myself from Uploaders
Afif Elghraoui pushed to branch master at Debian Med / falcon Commits: 93111ef0 by Afif Elghraoui at 2019-02-07T05:18:35Z Remove myself from Uploaders - - - - - 1 changed file: - debian/control Changes: = debian/control = @@ -1,6 +1,5 @@ Source: falcon Maintainer: Debian Med Packaging Team -Uploaders: Afif Elghraoui Section: science Priority: optional Build-Depends: debhelper (>= 11~), View it on GitLab: https://salsa.debian.org/med-team/falcon/commit/93111ef0e7480d316d7282259083a6bd02ac98df -- View it on GitLab: https://salsa.debian.org/med-team/falcon/commit/93111ef0e7480d316d7282259083a6bd02ac98df You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/consensuscore][master] Remove myself from Uploaders
Afif Elghraoui pushed to branch master at Debian Med / consensuscore Commits: 31ee6349 by Afif Elghraoui at 2019-02-07T05:17:38Z Remove myself from Uploaders - - - - - 1 changed file: - debian/control Changes: = debian/control = @@ -1,6 +1,5 @@ Source: consensuscore Maintainer: Debian Med Packaging Team -Uploaders: Afif Elghraoui Section: science Testsuite: autopkgtest-pkg-python Priority: optional View it on GitLab: https://salsa.debian.org/med-team/consensuscore/commit/31ee63496bcc067dfc2251feb406be70c65ae16a -- View it on GitLab: https://salsa.debian.org/med-team/consensuscore/commit/31ee63496bcc067dfc2251feb406be70c65ae16a You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/blasr][master] Remove myself from Uploaders
Afif Elghraoui pushed to branch master at Debian Med / blasr Commits: 592ea642 by Afif Elghraoui at 2019-02-07T05:16:28Z Remove myself from Uploaders - - - - - 1 changed file: - debian/control Changes: = debian/control = @@ -1,6 +1,5 @@ Source: blasr Maintainer: Debian Med Packaging Team -Uploaders: Afif Elghraoui Section: science Priority: optional Build-Depends: debhelper (>= 12~), View it on GitLab: https://salsa.debian.org/med-team/blasr/commit/592ea642ec701da8f7e8407507a4a62f646e4270 -- View it on GitLab: https://salsa.debian.org/med-team/blasr/commit/592ea642ec701da8f7e8407507a4a62f646e4270 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/bcftools][master] Remove myself from Uploaders
Afif Elghraoui pushed to branch master at Debian Med / bcftools Commits: 254ae2a8 by Afif Elghraoui at 2019-02-07T05:15:12Z Remove myself from Uploaders - - - - - 1 changed file: - debian/control Changes: = debian/control = @@ -1,6 +1,5 @@ Source: bcftools Maintainer: Debian Med Packaging Team -Uploaders: Afif Elghraoui Section: science Priority: optional Build-Depends: debhelper (>= 11~), View it on GitLab: https://salsa.debian.org/med-team/bcftools/commit/254ae2a8da6f92bb049033a48a0bb17d6f54091a -- View it on GitLab: https://salsa.debian.org/med-team/bcftools/commit/254ae2a8da6f92bb049033a48a0bb17d6f54091a You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/artemis][master] Remove myself from Uploaders
Afif Elghraoui pushed to branch master at Debian Med / artemis Commits: 217b4507 by Afif Elghraoui at 2019-02-07T05:12:40Z Remove myself from Uploaders - - - - - 1 changed file: - debian/control Changes: = debian/control = @@ -1,6 +1,5 @@ Source: artemis Maintainer: Debian Med Packaging Team -Uploaders: Afif Elghraoui Section: science Priority: optional Build-Depends: debhelper (>= 12~), View it on GitLab: https://salsa.debian.org/med-team/artemis/commit/217b4507d73dda04e51bb0b781f57472a1361ebd -- View it on GitLab: https://salsa.debian.org/med-team/artemis/commit/217b4507d73dda04e51bb0b781f57472a1361ebd You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/spades][master] Remove myself from uploaders
Afif Elghraoui pushed to branch master at Debian Med / spades Commits: e62b7025 by Afif Elghraoui at 2018-09-15T20:41:44Z Remove myself from uploaders - - - - - 1 changed file: - debian/control Changes: = debian/control = @@ -1,7 +1,6 @@ Source: spades Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille , - Afif Elghraoui , Sascha Steinbiss , Michael R. Crusoe , Alexandre Mestiashvili View it on GitLab: https://salsa.debian.org/med-team/spades/commit/e62b702588be7fff538cd9606ccfa865546b6a15 -- View it on GitLab: https://salsa.debian.org/med-team/spades/commit/e62b702588be7fff538cd9606ccfa865546b6a15 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/sniffles][master] 3 commits: Use dh_installman rather than debian/manpages
Afif Elghraoui pushed to branch master at Debian Med / sniffles Commits: e7f218e5 by Afif Elghraoui at 2018-07-08T00:44:17-04:00 Use dh_installman rather than debian/manpages The latter fails with `dpkg-buildpackage -B` because the file is apparently checked for existence before it is built. Closes: #903192 - - - - - b61ef3db by Afif Elghraoui at 2018-07-08T00:50:31-04:00 releasing package sniffles version 1.0.8+ds-2 - - - - - 025c00a6 by Afif Elghraoui at 2018-07-08T00:51:09-04:00 Merge branch master of ssh://salsa.debian.org/med-team/sniffles - - - - - 3 changed files: - debian/changelog - − debian/manpages - debian/rules Changes: = debian/changelog = --- a/debian/changelog +++ b/debian/changelog @@ -1,3 +1,9 @@ +sniffles (1.0.8+ds-2) unstable; urgency=low + + * Use dh_installman rather than debian/manpages (Closes: #903192) + + -- Afif Elghraoui Sun, 08 Jul 2018 00:49:22 -0400 + sniffles (1.0.8+ds-1) unstable; urgency=medium * New upstream version = debian/manpages deleted = --- a/debian/manpages +++ /dev/null @@ -1 +0,0 @@ -debian/sniffles.1 = debian/rules = --- a/debian/rules +++ b/debian/rules @@ -28,7 +28,8 @@ override_dh_auto_test: bin/sniffles-*/sniffles -m test_set/reads_region.bam -v test.vcf ifeq ($(filter nodoc,$(DEB_BUILD_PROFILES)),) -build: debian/sniffles.1 +override_dh_installman: debian/sniffles.1 + dh_installman $^ else override_dh_installman: ; endif View it on GitLab: https://salsa.debian.org/med-team/sniffles/compare/d1bdb7fc6ed2b6fa8b3f743875c492665b940101...025c00a6981579342ecf92b9a14999ccbd8cc44a -- View it on GitLab: https://salsa.debian.org/med-team/sniffles/compare/d1bdb7fc6ed2b6fa8b3f743875c492665b940101...025c00a6981579342ecf92b9a14999ccbd8cc44a You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/sniffles] Pushed new tag debian/1.0.8+ds-2
Afif Elghraoui pushed new tag debian/1.0.8+ds-2 at Debian Med / sniffles -- View it on GitLab: https://salsa.debian.org/med-team/sniffles/tree/debian/1.0.8+ds-2 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/pbgenomicconsensus][master] 5 commits: New upstream version 2.2.2
Afif Elghraoui pushed to branch master at Debian Med / pbgenomicconsensus Commits: 1211bfa6 by Afif Elghraoui at 2018-05-11T00:57:27-04:00 New upstream version 2.2.2 - - - - - f95dec6e by Afif Elghraoui at 2018-05-11T00:57:29-04:00 Merge tag upstream/2.2.2 Upstream version 2.2.2 - - - - - 4d4c8a01 by Afif Elghraoui at 2018-05-11T01:04:30-04:00 Add README.source explaining how to select upstream snapshots for packaging - - - - - 4a506e15 by Afif Elghraoui at 2018-05-11T01:05:26-04:00 Update changelog - - - - - c380f08c by Afif Elghraoui at 2018-05-11T01:06:33-04:00 Merge branch master of ssh://salsa.debian.org/med-team/pbgenomicconsensus - - - - - 30 changed files: - .gitignore - GenomicConsensus/ResultCollector.py - GenomicConsensus/Worker.py - GenomicConsensus/__init__.py - GenomicConsensus/algorithmSelection.py - GenomicConsensus/arrow/__init__.py - GenomicConsensus/arrow/arrow.py - GenomicConsensus/arrow/diploid.py - GenomicConsensus/arrow/evidence.py - GenomicConsensus/arrow/model.py - GenomicConsensus/arrow/utils.py - GenomicConsensus/consensus.py - GenomicConsensus/io/VariantsGffWriter.py - + GenomicConsensus/io/VariantsVcfWriter.py - GenomicConsensus/io/__init__.py - GenomicConsensus/io/utils.py - GenomicConsensus/main.py - GenomicConsensus/options.py - GenomicConsensus/plurality/__init__.py - GenomicConsensus/plurality/plurality.py - GenomicConsensus/poa/__init__.py - GenomicConsensus/poa/poa.py - GenomicConsensus/quiver/__init__.py - GenomicConsensus/quiver/diploid.py - GenomicConsensus/quiver/evidence.py - GenomicConsensus/quiver/model.py - GenomicConsensus/quiver/quiver.py - GenomicConsensus/quiver/resources/2013-03/GenomicConsensus/QuiverParameters.ini - GenomicConsensus/quiver/resources/2013-05/GenomicConsensus/QuiverParameters.ini - GenomicConsensus/quiver/resources/2013-09/GenomicConsensus/QuiverParameters.ini The diff was not included because it is too large. View it on GitLab: https://salsa.debian.org/med-team/pbgenomicconsensus/compare/cb48ed3e49e4518bebe314deb81db68cf38eef7e...c380f08cc6986109e3d5dd6029791cd74ead734d --- View it on GitLab: https://salsa.debian.org/med-team/pbgenomicconsensus/compare/cb48ed3e49e4518bebe314deb81db68cf38eef7e...c380f08cc6986109e3d5dd6029791cd74ead734d You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/pbgenomicconsensus][pristine-tar] pristine-tar data for pbgenomicconsensus_2.2.2.orig.tar.gz
Afif Elghraoui pushed to branch pristine-tar at Debian Med / pbgenomicconsensus Commits: 22b6d9b1 by Afif Elghraoui at 2018-05-11T00:57:29-04:00 pristine-tar data for pbgenomicconsensus_2.2.2.orig.tar.gz - - - - - 2 changed files: - + pbgenomicconsensus_2.2.2.orig.tar.gz.delta - + pbgenomicconsensus_2.2.2.orig.tar.gz.id Changes: = pbgenomicconsensus_2.2.2.orig.tar.gz.delta = Binary files /dev/null and b/pbgenomicconsensus_2.2.2.orig.tar.gz.delta differ = pbgenomicconsensus_2.2.2.orig.tar.gz.id = --- /dev/null +++ b/pbgenomicconsensus_2.2.2.orig.tar.gz.id @@ -0,0 +1 @@ +70d696d993cd475c680a6247a6bc0d8932076fc3 View it on GitLab: https://salsa.debian.org/med-team/pbgenomicconsensus/commit/22b6d9b10e7d3064f08da6c712b8b657e2c59671 --- View it on GitLab: https://salsa.debian.org/med-team/pbgenomicconsensus/commit/22b6d9b10e7d3064f08da6c712b8b657e2c59671 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/pbgenomicconsensus][upstream] New upstream version 2.2.2
Afif Elghraoui pushed to branch upstream at Debian Med / pbgenomicconsensus Commits: 1211bfa6 by Afif Elghraoui at 2018-05-11T00:57:27-04:00 New upstream version 2.2.2 - - - - - 30 changed files: - .gitignore - GenomicConsensus/ResultCollector.py - GenomicConsensus/Worker.py - GenomicConsensus/__init__.py - GenomicConsensus/algorithmSelection.py - GenomicConsensus/arrow/__init__.py - GenomicConsensus/arrow/arrow.py - GenomicConsensus/arrow/diploid.py - GenomicConsensus/arrow/evidence.py - GenomicConsensus/arrow/model.py - GenomicConsensus/arrow/utils.py - GenomicConsensus/consensus.py - GenomicConsensus/io/VariantsGffWriter.py - + GenomicConsensus/io/VariantsVcfWriter.py - GenomicConsensus/io/__init__.py - GenomicConsensus/io/utils.py - GenomicConsensus/main.py - GenomicConsensus/options.py - GenomicConsensus/plurality/__init__.py - GenomicConsensus/plurality/plurality.py - GenomicConsensus/poa/__init__.py - GenomicConsensus/poa/poa.py - GenomicConsensus/quiver/__init__.py - GenomicConsensus/quiver/diploid.py - GenomicConsensus/quiver/evidence.py - GenomicConsensus/quiver/model.py - GenomicConsensus/quiver/quiver.py - GenomicConsensus/quiver/resources/2013-03/GenomicConsensus/QuiverParameters.ini - GenomicConsensus/quiver/resources/2013-05/GenomicConsensus/QuiverParameters.ini - GenomicConsensus/quiver/resources/2013-09/GenomicConsensus/QuiverParameters.ini The diff was not included because it is too large. View it on GitLab: https://salsa.debian.org/med-team/pbgenomicconsensus/commit/1211bfa6ff11551a8bae5f0fea8cda0173409e7a --- View it on GitLab: https://salsa.debian.org/med-team/pbgenomicconsensus/commit/1211bfa6ff11551a8bae5f0fea8cda0173409e7a You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/python-pysam] Pushed new tag upstream/0.14.1+ds
Afif Elghraoui pushed new tag upstream/0.14.1+ds at Debian Med / python-pysam --- View it on GitLab: https://salsa.debian.org/med-team/python-pysam/tree/upstream/0.14.1+ds You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/python-pysam][master] 4 commits: New upstream version 0.14.1+ds
Afif Elghraoui pushed to branch master at Debian Med / python-pysam Commits: 6136085e by Afif Elghraoui at 2018-04-22T18:30:02-04:00 New upstream version 0.14.1+ds - - - - - b645c2d1 by Afif Elghraoui at 2018-04-22T18:30:14-04:00 Merge tag upstream/0.14.1+ds Upstream version 0.14.1+ds - - - - - 7846d7fe by Afif Elghraoui at 2018-04-22T19:02:29-04:00 Update patches - - - - - f3eea555 by Afif Elghraoui at 2018-04-22T19:03:27-04:00 Update changelog; current blocker is https://github.com/pysam-developers/pysam/issues/665 - - - - - 10 changed files: - NEWS - bcftools/bcftools.h - bcftools/consensus.c - bcftools/consensus.c.pysam.c - bcftools/convert.c - bcftools/convert.c.pysam.c - bcftools/convert.h - bcftools/csq.c - bcftools/csq.c.pysam.c - bcftools/filter.c The diff was not included because it is too large. View it on GitLab: https://salsa.debian.org/med-team/python-pysam/compare/8ffc742573f93e43519b501f86201af9ae40f630...f3eea555c5ffe80bb0218d327880bafcca3cbb16 --- View it on GitLab: https://salsa.debian.org/med-team/python-pysam/compare/8ffc742573f93e43519b501f86201af9ae40f630...f3eea555c5ffe80bb0218d327880bafcca3cbb16 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/python-pysam][pristine-tar] pristine-tar data for python-pysam_0.14.1+ds.orig.tar.gz
Afif Elghraoui pushed to branch pristine-tar at Debian Med / python-pysam Commits: 94d34b98 by Afif Elghraoui at 2018-04-22T18:30:14-04:00 pristine-tar data for python-pysam_0.14.1+ds.orig.tar.gz - - - - - 2 changed files: - + python-pysam_0.14.1+ds.orig.tar.gz.delta - + python-pysam_0.14.1+ds.orig.tar.gz.id Changes: = python-pysam_0.14.1+ds.orig.tar.gz.delta = Binary files /dev/null and b/python-pysam_0.14.1+ds.orig.tar.gz.delta differ = python-pysam_0.14.1+ds.orig.tar.gz.id = --- /dev/null +++ b/python-pysam_0.14.1+ds.orig.tar.gz.id @@ -0,0 +1 @@ +ee2e47d9142e564f53e6aaeb02498699e332a798 View it on GitLab: https://salsa.debian.org/med-team/python-pysam/commit/94d34b98cc42358130d0fd890b652901a6a9c179 --- View it on GitLab: https://salsa.debian.org/med-team/python-pysam/commit/94d34b98cc42358130d0fd890b652901a6a9c179 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/python-pysam][upstream] New upstream version 0.14.1+ds
Afif Elghraoui pushed to branch upstream at Debian Med / python-pysam Commits: 6136085e by Afif Elghraoui at 2018-04-22T18:30:02-04:00 New upstream version 0.14.1+ds - - - - - 10 changed files: - NEWS - bcftools/bcftools.h - bcftools/consensus.c - bcftools/consensus.c.pysam.c - bcftools/convert.c - bcftools/convert.c.pysam.c - bcftools/convert.h - bcftools/csq.c - bcftools/csq.c.pysam.c - bcftools/filter.c The diff was not included because it is too large. View it on GitLab: https://salsa.debian.org/med-team/python-pysam/commit/6136085e9b8025bfc1a5e65c5b39d3cd98aceed1 --- View it on GitLab: https://salsa.debian.org/med-team/python-pysam/commit/6136085e9b8025bfc1a5e65c5b39d3cd98aceed1 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/python-easydev][master] releasing package python-easydev version 0.9.35+dfsg-2
Afif Elghraoui pushed to branch master at Debian Med / python-easydev Commits: 9f2eb670 by Afif Elghraoui at 2018-04-22T17:54:18-04:00 releasing package python-easydev version 0.9.35+dfsg-2 - - - - - 1 changed file: - debian/changelog Changes: = debian/changelog = --- a/debian/changelog +++ b/debian/changelog @@ -1,3 +1,11 @@ +python-easydev (0.9.35+dfsg-2) unstable; urgency=medium + + * Correct ITP bug number in previous changelog entry + * Add dependencies on python-pkg-resources (Closes: #896292, #896402) + * Bump Standards-Version to 4.1.3 + + -- Afif Elghraoui <a...@debian.org> Sun, 22 Apr 2018 17:53:49 -0400 + python-easydev (0.9.35+dfsg-1) unstable; urgency=medium * Initial release (Closes: #878964) View it on GitLab: https://salsa.debian.org/med-team/python-easydev/commit/9f2eb670005e80cbc0f74d795f5738e00bdb05e3 --- View it on GitLab: https://salsa.debian.org/med-team/python-easydev/commit/9f2eb670005e80cbc0f74d795f5738e00bdb05e3 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/python-easydev] Pushed new tag debian/0.9.35+dfsg-2
Afif Elghraoui pushed new tag debian/0.9.35+dfsg-2 at Debian Med / python-easydev --- View it on GitLab: https://salsa.debian.org/med-team/python-easydev/tree/debian/0.9.35+dfsg-2 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/python-easydev][master] 2 commits: Add dependencies on python-pkg-resources
Afif Elghraoui pushed to branch master at Debian Med / python-easydev
Commits:
37df25ed by Afif Elghraoui at 2018-04-22T17:44:10-04:00
Add dependencies on python-pkg-resources
Closes: #896292, #896402
- - - - -
e506a07a by Afif Elghraoui at 2018-04-22T17:46:24-04:00
Bump Standards-Version to 4.1.3
- - - - -
1 changed file:
- debian/control
Changes:
=
debian/control
=
--- a/debian/control
+++ b/debian/control
@@ -18,7 +18,7 @@ Build-Depends:
python3-colorama,
python3-pexpect,
python3-appdirs,
-Standards-Version: 4.1.1
+Standards-Version: 4.1.3
Homepage: https://easydev-python.readthedocs.io/en/latest/
Vcs-Git: https://anonscm.debian.org/git/debian-med/python-easydev.git
Vcs-Browser: https://anonscm.debian.org/cgit/debian-med/python-easydev.git
@@ -29,6 +29,7 @@ Architecture: all
Depends:
${python:Depends},
${misc:Depends},
+ python-pkg-resources,
python-appdirs,
Description: common utilities to ease the development of Python packages
(Python 2)
The package easydev provides miscellaneous functions that are often used in
@@ -42,6 +43,7 @@ Architecture: all
Depends:
${python3:Depends},
${misc:Depends},
+ python3-pkg-resources,
python3-appdirs,
Description: common utilities to ease the development of Python packages
(Python 3)
The package easydev provides miscellaneous functions that are often used in
View it on GitLab:
https://salsa.debian.org/med-team/python-easydev/compare/eed6b60c48a88b421b69f10afa00bacaaa74d28e...e506a07afe0957d69d8e58c321e4b69c73c9e1fd
---
View it on GitLab:
https://salsa.debian.org/med-team/python-easydev/compare/eed6b60c48a88b421b69f10afa00bacaaa74d28e...e506a07afe0957d69d8e58c321e4b69c73c9e1fd
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[med-svn] [Git][med-team/sniffles][pristine-tar] pristine-tar data for sniffles_1.0.8+ds.orig.tar.gz
Afif Elghraoui pushed to branch pristine-tar at Debian Med / sniffles Commits: fafb313d by Afif Elghraoui at 2018-03-24T15:01:37-04:00 pristine-tar data for sniffles_1.0.8+ds.orig.tar.gz - - - - - 2 changed files: - + sniffles_1.0.8+ds.orig.tar.gz.delta - + sniffles_1.0.8+ds.orig.tar.gz.id Changes: = sniffles_1.0.8+ds.orig.tar.gz.delta = Binary files /dev/null and b/sniffles_1.0.8+ds.orig.tar.gz.delta differ = sniffles_1.0.8+ds.orig.tar.gz.id = --- /dev/null +++ b/sniffles_1.0.8+ds.orig.tar.gz.id @@ -0,0 +1 @@ +b6396113c1488eaafbdc55e8c663407985fe3f9a View it on GitLab: https://salsa.debian.org/med-team/sniffles/commit/fafb313dcb871a14929acae5fb1eebcd5e478785 --- View it on GitLab: https://salsa.debian.org/med-team/sniffles/commit/fafb313dcb871a14929acae5fb1eebcd5e478785 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-commit@lists.alioth.debian.org http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/sniffles] Pushed new tag debian/1.0.8+ds-1
Afif Elghraoui pushed new tag debian/1.0.8+ds-1 at Debian Med / sniffles --- View it on GitLab: https://salsa.debian.org/med-team/sniffles/tree/debian/1.0.8+ds-1 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-commit@lists.alioth.debian.org http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/sniffles] Pushed new tag upstream/1.0.8+ds
Afif Elghraoui pushed new tag upstream/1.0.8+ds at Debian Med / sniffles --- View it on GitLab: https://salsa.debian.org/med-team/sniffles/tree/upstream/1.0.8+ds You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-commit@lists.alioth.debian.org http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/canu] Pushed new tag debian/1.7+dfsg-1
Afif Elghraoui pushed new tag debian/1.7+dfsg-1 at Debian Med / canu --- View it on GitLab: https://salsa.debian.org/med-team/canu/tree/debian/1.7+dfsg-1 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-commit@lists.alioth.debian.org http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/canu][master] releasing package canu version 1.7+dfsg-1
Afif Elghraoui pushed to branch master at Debian Med / canu Commits: 52a3f22d by Afif Elghraoui at 2018-03-17T18:16:14-04:00 releasing package canu version 1.7+dfsg-1 - - - - - 1 changed file: - debian/changelog Changes: = debian/changelog = --- a/debian/changelog +++ b/debian/changelog @@ -1,6 +1,6 @@ -canu (1.7+dfsg-1) UNRELEASED; urgency=medium +canu (1.7+dfsg-1) unstable; urgency=medium - * New upstream version 1.7+dfsg + * New upstream version * Update handling of mhap bundled copy * Refresh patches * Use a wrapper script for main program @@ -8,7 +8,7 @@ canu (1.7+dfsg-1) UNRELEASED; urgency=medium * Bump mhap minimum version * Bump Standards-Version to 4.1.3 - -- Afif Elghraoui <a...@debian.org> Sat, 10 Mar 2018 23:44:12 -0500 + -- Afif Elghraoui <a...@debian.org> Sat, 17 Mar 2018 18:09:13 -0400 canu (1.6+dfsg-2) unstable; urgency=medium View it on GitLab: https://salsa.debian.org/med-team/canu/commit/52a3f22d7bb368afb9a5d64b5a16c531fd6f1ad4 --- View it on GitLab: https://salsa.debian.org/med-team/canu/commit/52a3f22d7bb368afb9a5d64b5a16c531fd6f1ad4 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-commit@lists.alioth.debian.org http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/mhap][pristine-tar] pristine-tar data for mhap_2.1.3+dfsg.orig.tar.gz
Afif Elghraoui pushed to branch pristine-tar at Debian Med / mhap Commits: 42281627 by Afif Elghraoui at 2018-03-15T23:59:54-04:00 pristine-tar data for mhap_2.1.3+dfsg.orig.tar.gz - - - - - 2 changed files: - + mhap_2.1.3+dfsg.orig.tar.gz.delta - + mhap_2.1.3+dfsg.orig.tar.gz.id Changes: = mhap_2.1.3+dfsg.orig.tar.gz.delta = Binary files /dev/null and b/mhap_2.1.3+dfsg.orig.tar.gz.delta differ = mhap_2.1.3+dfsg.orig.tar.gz.id = --- /dev/null +++ b/mhap_2.1.3+dfsg.orig.tar.gz.id @@ -0,0 +1 @@ +4f868cf6c6f2a19788e9f7a03a00225b689e5d8d View it on GitLab: https://salsa.debian.org/med-team/mhap/commit/42281627a2492635535f8c685d0a6e45c8342f34 --- View it on GitLab: https://salsa.debian.org/med-team/mhap/commit/42281627a2492635535f8c685d0a6e45c8342f34 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-commit@lists.alioth.debian.org http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/mhap] Pushed new tag upstream/2.1.3+dfsg
Afif Elghraoui pushed new tag upstream/2.1.3+dfsg at Debian Med / mhap --- View it on GitLab: https://salsa.debian.org/med-team/mhap/tree/upstream/2.1.3+dfsg You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-commit@lists.alioth.debian.org http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/mhap] Pushed new tag debian/2.1.3+dfsg-1
Afif Elghraoui pushed new tag debian/2.1.3+dfsg-1 at Debian Med / mhap --- View it on GitLab: https://salsa.debian.org/med-team/mhap/tree/debian/2.1.3+dfsg-1 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-commit@lists.alioth.debian.org http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/canu] Pushed new tag upstream/1.7+dfsg
Afif Elghraoui pushed new tag upstream/1.7+dfsg at Debian Med / canu --- View it on GitLab: https://salsa.debian.org/med-team/canu/tree/upstream/1.7+dfsg You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-commit@lists.alioth.debian.org http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/canu][upstream] 2 commits: New upstream version 1.7+dfsg
Afif Elghraoui pushed to branch upstream at Debian Med / canu Commits: 243aa28b by Afif Elghraoui at 2018-03-10T17:09:47-05:00 New upstream version 1.7+dfsg - - - - - 6f15624a by Afif Elghraoui at 2018-03-10T18:53:46-05:00 New upstream version 1.7+dfsg - - - - - 30 changed files: - README.md - addCopyrights-BuildData.pl - addCopyrights.dat - addCopyrights.pl - documentation/reST-markup-hints - documentation/source/conf.py - documentation/source/faq.rst - documentation/source/parameter-reference.rst - documentation/source/quick-start.rst - documentation/source/tutorial.rst - src/AS_UTL/AS_UTL_alloc.H - src/AS_UTL/AS_UTL_fasta.C - src/AS_UTL/AS_UTL_fasta.H - src/AS_UTL/AS_UTL_fileIO.C - src/AS_UTL/AS_UTL_fileIO.H - src/AS_UTL/AS_UTL_reverseComplement.C - src/AS_UTL/AS_UTL_reverseComplement.H - src/AS_UTL/AS_UTL_stackTrace.C - src/AS_UTL/bitPackedArray.C - src/AS_UTL/bitPackedFile.C - src/AS_UTL/bitPackedFile.H - src/AS_UTL/bitPacking.H - src/AS_UTL/dnaAlphabets.H - src/AS_UTL/intervalList.H - src/AS_UTL/intervalListTest.C - + src/AS_UTL/memoryMappedFile.C - src/AS_UTL/memoryMappedFile.H - src/AS_UTL/mt19937ar.C - src/AS_UTL/mt19937ar.H - src/AS_UTL/readBuffer.C The diff was not included because it is too large. View it on GitLab: https://salsa.debian.org/med-team/canu/compare/3dbd24eb7ac4a7479ac4f8bfba75146f5a8908ff...6f15624ae2bb3dcc6f0a2a19679e5957131f78b8 --- View it on GitLab: https://salsa.debian.org/med-team/canu/compare/3dbd24eb7ac4a7479ac4f8bfba75146f5a8908ff...6f15624ae2bb3dcc6f0a2a19679e5957131f78b8 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-commit@lists.alioth.debian.org http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/canu][master] 14 commits: New upstream version 1.7+dfsg
Afif Elghraoui pushed to branch master at Debian Med / canu Commits: 243aa28b by Afif Elghraoui at 2018-03-10T17:09:47-05:00 New upstream version 1.7+dfsg - - - - - 72ffbdd9 by Afif Elghraoui at 2018-03-10T17:09:51-05:00 Merge tag upstream/1.7+dfsg Upstream version 1.7+dfsg - - - - - df269544 by Afif Elghraoui at 2018-03-10T18:51:20-05:00 Update handling of MHAP copy The jar file is bundled rather than its source code. The patches to exclude the build directory arent needed, but Files-Excluded needed to be changed. - - - - - aba64962 by Afif Elghraoui at 2018-03-10T18:52:20-05:00 Refresh patches - - - - - ceb7a203 by Afif Elghraoui at 2018-03-10T18:52:20-05:00 use a wrapper script and leave /usr/lib/canu/ as undisturbed as possible Rather than patching paths, let the canu main program live where it expects to be, just using a wrapper script in /usr/bin. - - - - - 6f15624a by Afif Elghraoui at 2018-03-10T18:53:46-05:00 New upstream version 1.7+dfsg - - - - - 24d6be52 by Afif Elghraoui at 2018-03-10T18:53:50-05:00 Merge tag upstream/1.7+dfsg Upstream version 1.7+dfsg - - - - - 5419d316 by Afif Elghraoui at 2018-03-10T19:08:53-05:00 Remove build system dependency on bundled MHAP - - - - - 0ce0b35d by Afif Elghraoui at 2018-03-10T19:25:44-05:00 fix typo in patch - - - - - 2454ffa4 by Afif Elghraoui at 2018-03-10T19:48:01-05:00 fix path to mhap jar - - - - - d8b271be by Afif Elghraoui at 2018-03-10T19:48:21-05:00 move gnuplot to Depends - - - - - ae4c2a99 by Afif Elghraoui at 2018-03-10T20:16:24-05:00 Bump mhap minimum version - - - - - b673b3d8 by Afif Elghraoui at 2018-03-10T20:17:39-05:00 Bump Standards-Version to 4.1.3 - - - - - 4eafc31f by Afif Elghraoui at 2018-03-10T23:45:30-05:00 Update changelog (need update to mhap package) - - - - - 30 changed files: - README.md - addCopyrights-BuildData.pl - addCopyrights.dat - addCopyrights.pl - + debian/bin/canu - debian/changelog - debian/control - debian/copyright - debian/install - − debian/links - − debian/patches/external-deps.patch - + debian/patches/external-mhap.patch - debian/patches/gcc-7_format-security.patch - − debian/patches/relative-paths.patch - debian/patches/series - debian/patches/use-debian-mhap-at-runtime.patch - debian/rules - documentation/reST-markup-hints - documentation/source/conf.py - documentation/source/faq.rst - documentation/source/parameter-reference.rst - documentation/source/quick-start.rst - documentation/source/tutorial.rst - src/AS_UTL/AS_UTL_alloc.H - src/AS_UTL/AS_UTL_fasta.C - src/AS_UTL/AS_UTL_fasta.H - src/AS_UTL/AS_UTL_fileIO.C - src/AS_UTL/AS_UTL_fileIO.H - src/AS_UTL/AS_UTL_reverseComplement.C - src/AS_UTL/AS_UTL_reverseComplement.H The diff was not included because it is too large. View it on GitLab: https://salsa.debian.org/med-team/canu/compare/5bffe33302bbe0f1210c01a75d6b0ca04b026ffa...4eafc31fe7e77b532289eb68cff4b3e81970b033 --- View it on GitLab: https://salsa.debian.org/med-team/canu/compare/5bffe33302bbe0f1210c01a75d6b0ca04b026ffa...4eafc31fe7e77b532289eb68cff4b3e81970b033 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-commit@lists.alioth.debian.org http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/canu][pristine-tar] 2 commits: pristine-tar data for canu_1.7+dfsg.orig.tar.gz
Afif Elghraoui pushed to branch pristine-tar at Debian Med / canu Commits: 61b48daf by Afif Elghraoui at 2018-03-10T17:09:51-05:00 pristine-tar data for canu_1.7+dfsg.orig.tar.gz - - - - - 5efd6a26 by Afif Elghraoui at 2018-03-10T18:53:50-05:00 pristine-tar data for canu_1.7+dfsg.orig.tar.gz - - - - - 2 changed files: - + canu_1.7+dfsg.orig.tar.gz.delta - + canu_1.7+dfsg.orig.tar.gz.id Changes: = canu_1.7+dfsg.orig.tar.gz.delta = Binary files /dev/null and b/canu_1.7+dfsg.orig.tar.gz.delta differ = canu_1.7+dfsg.orig.tar.gz.id = --- /dev/null +++ b/canu_1.7+dfsg.orig.tar.gz.id @@ -0,0 +1 @@ +bb979e6c97d628c3430795a0f490ea76f8e71716 View it on GitLab: https://salsa.debian.org/med-team/canu/compare/af98a57aca17a8bd9c313b2ea089311fa2680274...5efd6a2600c09cd70f653d28c3c0aa7cf30a47d1 --- View it on GitLab: https://salsa.debian.org/med-team/canu/compare/af98a57aca17a8bd9c313b2ea089311fa2680274...5efd6a2600c09cd70f653d28c3c0aa7cf30a47d1 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-commit@lists.alioth.debian.org http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/mummer][pristine-tar] pristine-tar data for mummer_4.0.0~beta2+dfsg.orig.tar.xz
Afif Elghraoui pushed to branch pristine-tar at Debian Med / mummer Commits: 67df525c by Afif Elghraoui at 2018-02-24T23:00:47-05:00 pristine-tar data for mummer_4.0.0~beta2+dfsg.orig.tar.xz - - - - - 2 changed files: - + mummer_4.0.0~beta2+dfsg.orig.tar.xz.delta - + mummer_4.0.0~beta2+dfsg.orig.tar.xz.id Changes: = mummer_4.0.0~beta2+dfsg.orig.tar.xz.delta = Binary files /dev/null and b/mummer_4.0.0~beta2+dfsg.orig.tar.xz.delta differ = mummer_4.0.0~beta2+dfsg.orig.tar.xz.id = --- /dev/null +++ b/mummer_4.0.0~beta2+dfsg.orig.tar.xz.id @@ -0,0 +1 @@ +c257ef1a91da29ecf340677919df0783034b62fb View it on GitLab: https://salsa.debian.org/med-team/mummer/commit/67df525c6673b53b4891596384820b3fe55c5138 --- View it on GitLab: https://salsa.debian.org/med-team/mummer/commit/67df525c6673b53b4891596384820b3fe55c5138 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-commit@lists.alioth.debian.org http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/mummer][upstream] New upstream version 4.0.0~beta2+dfsg
Afif Elghraoui pushed to branch upstream at Debian Med / mummer Commits: 4e287f7e by Afif Elghraoui at 2018-02-24T22:59:56-05:00 New upstream version 4.0.0~beta2+dfsg - - - - - 29 changed files: - + .gitignore - + .gitmod - + .travis.yml - − INSTALL - + INSTALL.md - − LICENSE - + LICENSE.md - README → MANUAL.md - + Makefile.am - Makefile → Makefile.orig - + OBSOLETE.md - + README.md - + configs/debug.config - + configs/default.config - + configs/sanitize.config - + configure.ac - + examples/Readme.md - + examples/align.pl - + examples/align.py - + examples/align.rb - + examples/align_cpp/Makefile - + examples/align_cpp/Readme.md - + examples/align_cpp/align.cpp - + include/compactsufsort/compactsufsort.hpp - + include/compactsufsort/compactsufsort_imp.hpp - + include/compactsufsort/const_iterator_traits.hpp - + include/compactsufsort/divsufsort_private.h - + include/compactsufsort/said_traits.hpp - + include/compactsufsort/sssort_imp.hpp The diff was not included because it is too large. View it on GitLab: https://salsa.debian.org/med-team/mummer/commit/4e287f7e54c915c2749bf400f89d0ca8370d2232 --- View it on GitLab: https://salsa.debian.org/med-team/mummer/commit/4e287f7e54c915c2749bf400f89d0ca8370d2232 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-commit@lists.alioth.debian.org http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/mummer] Pushed new branch debian/experimental
Afif Elghraoui pushed new branch debian/experimental at Debian Med / mummer --- View it on GitLab: https://salsa.debian.org/med-team/mummer/tree/debian/experimental You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-commit@lists.alioth.debian.org http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/mummer] Pushed new tag upstream/4.0.0_beta2+dfsg
Afif Elghraoui pushed new tag upstream/4.0.0_beta2+dfsg at Debian Med / mummer --- View it on GitLab: https://salsa.debian.org/med-team/mummer/tree/upstream/4.0.0_beta2+dfsg You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-commit@lists.alioth.debian.org http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/trnascan-se] Pushed new tag debian/2.0.0-1
Afif Elghraoui pushed new tag debian/2.0.0-1 at Debian Med / trnascan-se --- View it on GitLab: https://salsa.debian.org/med-team/trnascan-se/tree/debian/2.0.0-1 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-commit@lists.alioth.debian.org http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/falcon][master] 4 commits: New upstream version 2.0.0
Afif Elghraoui pushed to branch master at Debian Med / falcon Commits: 7871ef7d by Afif Elghraoui at 2018-02-24T16:49:05-05:00 New upstream version 2.0.0 - - - - - 431c25cd by Afif Elghraoui at 2018-02-24T16:49:13-05:00 Merge tag upstream/2.0.0 Upstream version 2.0.0 - - - - - 3b9601fd by Afif Elghraoui at 2018-02-24T16:53:54-05:00 d/control: add build-depends on nim - - - - - e233bcdc by Afif Elghraoui at 2018-02-24T16:55:18-05:00 Update changelog - - - - - 30 changed files: - .travis.yml - DALIGNER/LA4Falcon.c - DALIGNER/LAmerge.c - DALIGNER/LAsort.c - DALIGNER/README - DALIGNER/bamboo_build.sh - DALIGNER/daligner.c - DAMASKER/DB.c - DAMASKER/DB.h - DAMASKER/HPC.REPmask.c - DAMASKER/HPC.TANmask.c - DAMASKER/Makefile - DAMASKER/QV.c - DAMASKER/QV.h - − DAMASKER/README - + DAMASKER/README.md - DAMASKER/REPmask.c - DAMASKER/TANmask.c - DAMASKER/align.c - DAMASKER/align.h - + DAMASKER/bamboo_build.sh - + DAMASKER/bamboo_make.sh - DAMASKER/datander.c - DAMASKER/tandem.c - DAMASKER/tandem.h - DAZZ_DB/Catrack.c - DAZZ_DB/DB.c - DAZZ_DB/DB.h - + DAZZ_DB/DB2arrow.c - DAZZ_DB/DB2quiva.c The diff was not included because it is too large. View it on GitLab: https://salsa.debian.org/med-team/falcon/compare/583701b6e954df4d94d7df11fc81cf82ad3bf07a...e233bcdc7bcd8a19587e5585f55d453492cbbf14 --- View it on GitLab: https://salsa.debian.org/med-team/falcon/compare/583701b6e954df4d94d7df11fc81cf82ad3bf07a...e233bcdc7bcd8a19587e5585f55d453492cbbf14 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-commit@lists.alioth.debian.org http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/falcon][pristine-tar] pristine-tar data for falcon_2.0.0.orig.tar.xz
Afif Elghraoui pushed to branch pristine-tar at Debian Med / falcon Commits: bbec7eca by Afif Elghraoui at 2018-02-24T16:49:12-05:00 pristine-tar data for falcon_2.0.0.orig.tar.xz - - - - - 2 changed files: - + falcon_2.0.0.orig.tar.xz.delta - + falcon_2.0.0.orig.tar.xz.id Changes: = falcon_2.0.0.orig.tar.xz.delta = Binary files /dev/null and b/falcon_2.0.0.orig.tar.xz.delta differ = falcon_2.0.0.orig.tar.xz.id = --- /dev/null +++ b/falcon_2.0.0.orig.tar.xz.id @@ -0,0 +1 @@ +be7219c8b1094cafb467a7eddd2b7ce7ec876211 View it on GitLab: https://salsa.debian.org/med-team/falcon/commit/bbec7eca3fe5cc0b4c5bea01a7f52dcaeddf6f6d --- View it on GitLab: https://salsa.debian.org/med-team/falcon/commit/bbec7eca3fe5cc0b4c5bea01a7f52dcaeddf6f6d You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-commit@lists.alioth.debian.org http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/falcon] Pushed new tag upstream/2.0.0
Afif Elghraoui pushed new tag upstream/2.0.0 at Debian Med / falcon --- View it on GitLab: https://salsa.debian.org/med-team/falcon/tree/upstream/2.0.0 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-commit@lists.alioth.debian.org http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/falcon][upstream] New upstream version 2.0.0
Afif Elghraoui pushed to branch upstream at Debian Med / falcon Commits: 7871ef7d by Afif Elghraoui at 2018-02-24T16:49:05-05:00 New upstream version 2.0.0 - - - - - 30 changed files: - .travis.yml - DALIGNER/LA4Falcon.c - DALIGNER/LAmerge.c - DALIGNER/LAsort.c - DALIGNER/README - DALIGNER/bamboo_build.sh - DALIGNER/daligner.c - DAMASKER/DB.c - DAMASKER/DB.h - DAMASKER/HPC.REPmask.c - DAMASKER/HPC.TANmask.c - DAMASKER/Makefile - DAMASKER/QV.c - DAMASKER/QV.h - − DAMASKER/README - + DAMASKER/README.md - DAMASKER/REPmask.c - DAMASKER/TANmask.c - DAMASKER/align.c - DAMASKER/align.h - + DAMASKER/bamboo_build.sh - + DAMASKER/bamboo_make.sh - DAMASKER/datander.c - DAMASKER/tandem.c - DAMASKER/tandem.h - DAZZ_DB/Catrack.c - DAZZ_DB/DB.c - DAZZ_DB/DB.h - + DAZZ_DB/DB2arrow.c - DAZZ_DB/DB2quiva.c The diff was not included because it is too large. View it on GitLab: https://salsa.debian.org/med-team/falcon/commit/7871ef7d2dafeccabd160dcb8e6559a1dbbf1177 --- View it on GitLab: https://salsa.debian.org/med-team/falcon/commit/7871ef7d2dafeccabd160dcb8e6559a1dbbf1177 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-commit@lists.alioth.debian.org http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/trnascan-se][master] Update changelog
Afif Elghraoui pushed to branch master at Debian Med / trnascan-se Commits: 05be319f by Afif Elghraoui at 2018-02-19T17:26:44-05:00 Update changelog - - - - - 1 changed file: - debian/changelog Changes: = debian/changelog = --- a/debian/changelog +++ b/debian/changelog @@ -9,8 +9,11 @@ trnascan-se (2.0.0-1) UNRELEASED; urgency=medium [ Afif Elghraoui ] * debian/watch: update to new URL * New upstream version 2.0.0 + * Standards-Version 4.1.3 + * debhelper compat 11 + * d/rules: clean up and remove dh_installchangelogs - -- Afif Elghraoui <a...@debian.org> Mon, 19 Feb 2018 17:16:29 -0500 + -- Afif Elghraoui <a...@debian.org> Mon, 19 Feb 2018 17:26:27 -0500 trnascan-se (1.3.1-1) unstable; urgency=medium View it on GitLab: https://salsa.debian.org/med-team/trnascan-se/commit/05be319f6c58589470935e0d5159ae94639b19aa --- View it on GitLab: https://salsa.debian.org/med-team/trnascan-se/commit/05be319f6c58589470935e0d5159ae94639b19aa You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-commit@lists.alioth.debian.org http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/trnascan-se][master] 3 commits: Standards-Version 4.1.3
Afif Elghraoui pushed to branch master at Debian Med / trnascan-se Commits: 96cc42d4 by Afif Elghraoui at 2018-02-19T17:24:14-05:00 Standards-Version 4.1.3 - - - - - 71c9eedc by Afif Elghraoui at 2018-02-19T17:25:14-05:00 debhelper compat 11 - - - - - dace1810 by Afif Elghraoui at 2018-02-19T17:25:41-05:00 d/rules: clean up and remove dh_installchangelogs That changelog file isnt there anymore. - - - - - 3 changed files: - debian/compat - debian/control - debian/rules Changes: = debian/compat = --- a/debian/compat +++ b/debian/compat @@ -1 +1 @@ -9 +11 = debian/control = --- a/debian/control +++ b/debian/control @@ -3,8 +3,8 @@ Section: non-free/science Priority: optional Maintainer: Debian Med Packaging Team <debian-med-packag...@lists.alioth.debian.org> Uploaders: Afif Elghraoui <a...@debian.org> -Build-Depends: debhelper (>= 9) -Standards-Version: 3.9.8 +Build-Depends: debhelper (>= 11) +Standards-Version: 4.1.3 Homepage: http://lowelab.ucsc.edu/tRNAscan-SE Vcs-Git: https://anonscm.debian.org/git/debian-med/trnascan-se.git Vcs-Browser: https://anonscm.debian.org/cgit/debian-med/trnascan-se.git = debian/rules = --- a/debian/rules +++ b/debian/rules @@ -1,14 +1,6 @@ #!/usr/bin/make -f -#DH_VERBOSE = 1 - -DPKG_EXPORT_BUILDFLAGS = 1 -include /usr/share/dpkg/default.mk - CFLAGS := $(CPPFLAGS) $(CFLAGS) %: - dh $@ --parallel - -override_dh_installchangelogs: - dh_installchangelogs Release.history + dh $@ View it on GitLab: https://salsa.debian.org/med-team/trnascan-se/compare/dc5a63cb1377678a26b0e1d577b90dfb26158275...dace1810fde83a9f7b21e4369f04ee5972167c66 --- View it on GitLab: https://salsa.debian.org/med-team/trnascan-se/compare/dc5a63cb1377678a26b0e1d577b90dfb26158275...dace1810fde83a9f7b21e4369f04ee5972167c66 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-commit@lists.alioth.debian.org http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/trnascan-se] Pushed new tag upstream/2.0.0
Afif Elghraoui pushed new tag upstream/2.0.0 at Debian Med / trnascan-se --- View it on GitLab: https://salsa.debian.org/med-team/trnascan-se/tree/upstream/2.0.0 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-commit@lists.alioth.debian.org http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/trnascan-se][master] 5 commits: debian/watch: update to new URL
Afif Elghraoui pushed to branch master at Debian Med / trnascan-se Commits: 7537bfe4 by Afif Elghraoui at 2018-02-19T17:11:07-05:00 debian/watch: update to new URL - - - - - 5844a2c7 by Afif Elghraoui at 2018-02-19T17:12:34-05:00 Revert New upstream version 1.23 This reverts commit dc9d5b7eea6a47c5537aa75b88d77e81ea7b3b57. 1.23 was actually older than 1.3.1; upsteam wasnt using proper monotic versions. Reverting this merge so that we can properly see the differences between the latest and previous releases. - - - - - b12160d8 by Afif Elghraoui at 2018-02-19T17:14:07-05:00 New upstream version 2.0.0 - - - - - 401fd847 by Afif Elghraoui at 2018-02-19T17:14:09-05:00 Merge tag upstream/2.0.0 Upstream version 2.0.0 - - - - - dc5a63cb by Afif Elghraoui at 2018-02-19T17:17:08-05:00 Update changelog - - - - - 30 changed files: - COPYING - − Cove/COPYING - − Cove/DEMO - − Cove/Demos/7SL-euk.cm - − Cove/Demos/7SL-euk.fa - − Cove/Demos/K11H3frag.fa - − Cove/Demos/fig5.fa - − Cove/Demos/fig5.slx - − Cove/Demos/sim100.fa - − Cove/Demos/sim100.slx - − Cove/Demos/sim65.fa - − Cove/Demos/sim65.slx - − Cove/Demos/test100.fa - − Cove/Demos/test100.slx - − Cove/Demos/trna1415.slx - − Cove/Demos/yeast-phe.fa - − Cove/Guide.tex - − Demo/C28G1.fa - − Demo/DQ6060.fa - + Demo/Example1-tRNAs.bed - + Demo/Example1-tRNAs.iso - + Demo/Example1-tRNAs.out - + Demo/Example1-tRNAs.ss - + Demo/Example1-tRNAs.stats - Demo/F22B7.fa → Demo/Example1.fa - + Demo/Example2-tRNAs.iso - + Demo/Example2-tRNAs.out - + Demo/Example2-tRNAs.ss - + Demo/Example2-tRNAs.stats - + Demo/Example2.fa The diff was not included because it is too large. View it on GitLab: https://salsa.debian.org/med-team/trnascan-se/compare/ca28b8d2f0ac6b238c3ae32fb6b5a2b752d86950...dc5a63cb1377678a26b0e1d577b90dfb26158275 --- View it on GitLab: https://salsa.debian.org/med-team/trnascan-se/compare/ca28b8d2f0ac6b238c3ae32fb6b5a2b752d86950...dc5a63cb1377678a26b0e1d577b90dfb26158275 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-commit@lists.alioth.debian.org http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/trnascan-se][upstream] New upstream version 2.0.0
Afif Elghraoui pushed to branch upstream at Debian Med / trnascan-se Commits: b12160d8 by Afif Elghraoui at 2018-02-19T17:14:07-05:00 New upstream version 2.0.0 - - - - - 29 changed files: - − Archaea-BHB-noncan.cm - COPYING - − Cove/COPYING - − Cove/DEMO - − Cove/Demos/7SL-euk.cm - − Cove/Demos/7SL-euk.fa - − Cove/Demos/K11H3frag.fa - − Cove/Demos/fig5.fa - − Cove/Demos/fig5.slx - − Cove/Demos/sim100.fa - − Cove/Demos/sim100.slx - − Cove/Demos/sim65.fa - − Cove/Demos/sim65.slx - − Cove/Demos/test100.fa - − Cove/Demos/test100.slx - − Cove/Demos/trna1415.slx - − Cove/Demos/yeast-phe.fa - − Cove/Guide.tex - − Demo/C28G1.fa - − Demo/DQ6060.fa - + Demo/Example1-tRNAs.bed - + Demo/Example1-tRNAs.iso - + Demo/Example1-tRNAs.out - + Demo/Example1-tRNAs.ss - + Demo/Example1-tRNAs.stats - Demo/F22B7.fa → Demo/Example1.fa - + Demo/Example2-tRNAs.iso - + Demo/Example2-tRNAs.out - + Demo/Example2-tRNAs.ss The diff was not included because it is too large. View it on GitLab: https://salsa.debian.org/med-team/trnascan-se/commit/b12160d871083f3674ac98e0bc219637eca1f06b --- View it on GitLab: https://salsa.debian.org/med-team/trnascan-se/commit/b12160d871083f3674ac98e0bc219637eca1f06b You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-commit@lists.alioth.debian.org http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/trnascan-se][pristine-tar] pristine-tar data for trnascan-se_2.0.0.orig.tar.gz
Afif Elghraoui pushed to branch pristine-tar at Debian Med / trnascan-se Commits: aa11a88d by Afif Elghraoui at 2018-02-19T17:14:09-05:00 pristine-tar data for trnascan-se_2.0.0.orig.tar.gz - - - - - 2 changed files: - + trnascan-se_2.0.0.orig.tar.gz.delta - + trnascan-se_2.0.0.orig.tar.gz.id Changes: = trnascan-se_2.0.0.orig.tar.gz.delta = Binary files /dev/null and b/trnascan-se_2.0.0.orig.tar.gz.delta differ = trnascan-se_2.0.0.orig.tar.gz.id = --- /dev/null +++ b/trnascan-se_2.0.0.orig.tar.gz.id @@ -0,0 +1 @@ +242a07a8e31ce38c108cd8d3d614db99268e7825 View it on GitLab: https://salsa.debian.org/med-team/trnascan-se/commit/aa11a88dc91d1bb2115736136fbd46c6282fe9df --- View it on GitLab: https://salsa.debian.org/med-team/trnascan-se/commit/aa11a88dc91d1bb2115736136fbd46c6282fe9df You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-commit@lists.alioth.debian.org http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/nanopolish][master] 3 commits: Bump minimum required fast5 version
Afif Elghraoui pushed to branch master at Debian Med / nanopolish
Commits:
cccda957 by Afif Elghraoui at 2018-02-17T20:46:45-05:00
Bump minimum required fast5 version
- - - - -
5844c060 by Afif Elghraoui at 2018-02-17T22:01:39-05:00
Include upstream patch to fix HDF5 errors appearing in autopkgtest
See https://github.com/jts/nanopolish/issues/335
- - - - -
34ec40c2 by Afif Elghraoui at 2018-02-17T22:02:38-05:00
releasing package nanopolish version 0.9.0-1
- - - - -
4 changed files:
- debian/changelog
- debian/control
- + debian/patches/hdf5-groupcheck.patch
- debian/patches/series
Changes:
=
debian/changelog
=
--- a/debian/changelog
+++ b/debian/changelog
@@ -1,10 +1,12 @@
-nanopolish (0.9.0-1) UNRELEASED; urgency=medium
+nanopolish (0.9.0-1) unstable; urgency=medium
- * New upstream version 0.9.0
+ * New upstream version
* Refresh patches
* Bump upstream copyright year
+ * Bump minimum required fast5 version
+ * Include upstream patch to fix HDF5 errors appearing in autopkgtest
- -- Afif Elghraoui <a...@debian.org> Sat, 17 Feb 2018 18:06:03 -0500
+ -- Afif Elghraoui <a...@debian.org> Sat, 17 Feb 2018 22:02:10 -0500
nanopolish (0.8.5-2) unstable; urgency=low
=
debian/control
=
--- a/debian/control
+++ b/debian/control
@@ -6,7 +6,7 @@ Uploaders: Afif Elghraoui <a...@debian.org>
Build-Depends:
debhelper (>= 10),
zlib1g-dev,
- libfast5-dev (>= 0.6.4),
+ libfast5-dev (>= 0.6.5),
libhts-dev,
libeigen3-dev,
Standards-Version: 4.1.3
=
debian/patches/hdf5-groupcheck.patch
=
--- /dev/null
+++ b/debian/patches/hdf5-groupcheck.patch
@@ -0,0 +1,27 @@
+From 303971c245d507988132ad8404f840461ff4d87d Mon Sep 17 00:00:00 2001
+From: Jared Simpson <jared.simp...@gmail.com>
+Date: Sat, 17 Feb 2018 21:48:45 -0500
+Subject: [PATCH] check for existence of group before opening it (#335)
+
+---
+ src/common/nanopolish_fast5_io.cpp | 7 +++
+ 1 file changed, 7 insertions(+)
+
+diff --git a/src/common/nanopolish_fast5_io.cpp
b/src/common/nanopolish_fast5_io.cpp
+index 0144062..7f38719 100644
+--- a/src/common/nanopolish_fast5_io.cpp
b/src/common/nanopolish_fast5_io.cpp
+@@ -208,6 +208,13 @@ std::string fast5_get_fixed_string_attribute(hid_t
hdf5_file, const std::string&
+ int ret;
+ std::string out;
+
++// according to
http://hdf-forum.184993.n3.nabble.com/check-if-dataset-exists-td194725.html
++// we should use H5Lexists to check for the existence of a group/dataset
using an arbitrary path
++ret = H5Lexists(hdf5_file, group_name.c_str(), H5P_DEFAULT);
++if(ret <= 0) {
++return "";
++}
++
+ // Open the group /Raw/Reads/Read_nnn
+ group = H5Gopen(hdf5_file, group_name.c_str(), H5P_DEFAULT);
+ if(group < 0) {
=
debian/patches/series
=
--- a/debian/patches/series
+++ b/debian/patches/series
@@ -1,2 +1,3 @@
add-shebang-to-script.patch
reproducible.patch
+hdf5-groupcheck.patch
View it on GitLab:
https://salsa.debian.org/med-team/nanopolish/compare/326887cec4e0a418b5b9089c13910c75334d181b...34ec40c2564b5e7fa2abeb244259b52bb47d8b00
---
View it on GitLab:
https://salsa.debian.org/med-team/nanopolish/compare/326887cec4e0a418b5b9089c13910c75334d181b...34ec40c2564b5e7fa2abeb244259b52bb47d8b00
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[med-svn] [Git][med-team/nanopolish] Pushed new tag debian/0.9.0-1
Afif Elghraoui pushed new tag debian/0.9.0-1 at Debian Med / nanopolish --- View it on GitLab: https://salsa.debian.org/med-team/nanopolish/tree/debian/0.9.0-1 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-commit@lists.alioth.debian.org http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/fast5] Pushed new tag upstream/0.6.5
Afif Elghraoui pushed new tag upstream/0.6.5 at Debian Med / fast5 --- View it on GitLab: https://salsa.debian.org/med-team/fast5/tree/upstream/0.6.5 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-commit@lists.alioth.debian.org http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/fast5] Pushed new tag debian/0.6.5-1
Afif Elghraoui pushed new tag debian/0.6.5-1 at Debian Med / fast5 --- View it on GitLab: https://salsa.debian.org/med-team/fast5/tree/debian/0.6.5-1 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-commit@lists.alioth.debian.org http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/fast5][master] 5 commits: New upstream version 0.6.5
Afif Elghraoui pushed to branch master at Debian Med / fast5
Commits:
895c2bf8 by Afif Elghraoui at 2018-02-17T20:34:32-05:00
New upstream version 0.6.5
- - - - -
70953e83 by Afif Elghraoui at 2018-02-17T20:34:32-05:00
Merge tag upstream/0.6.5
Upstream version 0.6.5
- - - - -
5f7d7f8f by Afif Elghraoui at 2018-02-17T20:36:01-05:00
Standards-Version 4.1.3
- - - - -
fd7d95d7 by Afif Elghraoui at 2018-02-17T20:38:05-05:00
Debhelper compat 11
- - - - -
6308fbfd by Afif Elghraoui at 2018-02-17T20:44:59-05:00
releasing package fast5 version 0.6.5-1
- - - - -
5 changed files:
- debian/changelog
- debian/compat
- debian/control
- include/fast5/hdf5_tools.hpp
- src/hdf5-mod.cpp
Changes:
=
debian/changelog
=
--- a/debian/changelog
+++ b/debian/changelog
@@ -1,3 +1,11 @@
+fast5 (0.6.5-1) unstable; urgency=medium
+
+ * New upstream version
+ * Standards-Version 4.1.3
+ * Debhelper compat 11
+
+ -- Afif Elghraoui <a...@debian.org> Sat, 17 Feb 2018 20:43:22 -0500
+
fast5 (0.6.4-2) unstable; urgency=low
* Allow stderr output in autpkgtests to ignore notes
=
debian/compat
=
--- a/debian/compat
+++ b/debian/compat
@@ -1 +1 @@
-9
+11
=
debian/control
=
--- a/debian/control
+++ b/debian/control
@@ -4,7 +4,7 @@ Priority: optional
Maintainer: Debian Med Packaging Team
<debian-med-packag...@lists.alioth.debian.org>
Uploaders: Afif Elghraoui <a...@debian.org>
Build-Depends:
- debhelper (>= 9),
+ debhelper (>= 11),
dh-python,
libhdf5-dev,
libboost-python-dev,
@@ -14,7 +14,7 @@ Build-Depends:
python3-setuptools,
cython,
cython3
-Standards-Version: 4.1.2
+Standards-Version: 4.1.3
Homepage: https://github.com/mateidavid/fast5
Vcs-Git: https://anonscm.debian.org/git/debian-med/fast5.git
Vcs-Browser: https://anonscm.debian.org/cgit/debian-med/fast5.git
=
include/fast5/hdf5_tools.hpp
=
--- a/include/fast5/hdf5_tools.hpp
+++ b/include/fast5/hdf5_tools.hpp
@@ -26,17 +26,13 @@
#include
/// Original HDF5 C API.
-namespace hdf5
-{
#ifndef DOXY
#include
#endif
-}
/// New C++ wrapper for the HDF5 C API.
namespace hdf5_tools
{
-using namespace hdf5;
/// Exception class thrown by failed hdf5 operations.
class Exception
@@ -2248,15 +2244,15 @@ public:
detail::HDF_Object_Holder src_attr_dtype_id_holder(
detail::Util::wrap(H5Aget_type, src_attr_id_holder.id),
detail::Util::wrapped_closer(H5Tclose));
-if (hdf5::H5Tget_class(src_attr_dtype_id_holder.id) == H5T_INTEGER)
+if (H5Tget_class(src_attr_dtype_id_holder.id) == H5T_INTEGER)
{
-if (hdf5::H5Tget_sign(src_attr_dtype_id_holder.id) == H5T_SGN_NONE)
+if (H5Tget_sign(src_attr_dtype_id_holder.id) == H5T_SGN_NONE)
{
unsigned long long tmp;
src_f.read(src_full_path, tmp);
dst_f.write_attribute(dst_full_path, tmp,
src_attr_dtype_id_holder.id);
}
-else if (hdf5::H5Tget_sign(src_attr_dtype_id_holder.id) ==
H5T_SGN_2)
+else if (H5Tget_sign(src_attr_dtype_id_holder.id) == H5T_SGN_2)
{
long long tmp;
src_f.read(src_full_path, tmp);
@@ -2267,17 +2263,17 @@ public:
throw Exception("error in H5Tget_sign");
}
}
-else if (hdf5::H5Tget_class(src_attr_dtype_id_holder.id) == H5T_FLOAT)
+else if (H5Tget_class(src_attr_dtype_id_holder.id) == H5T_FLOAT)
{
long double tmp;
src_f.read(src_full_path, tmp);
dst_f.write_attribute(dst_full_path, tmp,
src_attr_dtype_id_holder.id);
}
-else if (hdf5::H5Tget_class(src_attr_dtype_id_holder.id) == H5T_STRING)
+else if (H5Tget_class(src_attr_dtype_id_holder.id) == H5T_STRING)
{
std::string tmp;
src_f.read(src_full_path, tmp);
-auto is_varlen =
hdf5::H5Tis_variable_str(src_attr_dtype_id_holder.id);
+auto is_varlen = H5Tis_variable_str(src_attr_dtype_id_holder.id);
if (is_varlen < 0) throw Exception("error in H5Tis_variable_str");
if (is_varlen)
{
@@ -2286,12 +2282,12 @@ public:
else
{
// not varlen; now deal with array-of-size-1 chars
-int sz = hdf5::H5Tget_size(src_attr_dtype_id_holder.id);
+int sz = H5Tget_size(src_attr_dtype_id_holder.id);
if (sz == 0) throw Exception("error in H5Tget_size");
detail::HDF_Object_Holder src_attr_dspace_id_holder(
[med-svn] [Git][med-team/fast5][upstream] New upstream version 0.6.5
Afif Elghraoui pushed to branch upstream at Debian Med / fast5
Commits:
895c2bf8 by Afif Elghraoui at 2018-02-17T20:34:32-05:00
New upstream version 0.6.5
- - - - -
2 changed files:
- include/fast5/hdf5_tools.hpp
- src/hdf5-mod.cpp
Changes:
=
include/fast5/hdf5_tools.hpp
=
--- a/include/fast5/hdf5_tools.hpp
+++ b/include/fast5/hdf5_tools.hpp
@@ -26,17 +26,13 @@
#include
/// Original HDF5 C API.
-namespace hdf5
-{
#ifndef DOXY
#include
#endif
-}
/// New C++ wrapper for the HDF5 C API.
namespace hdf5_tools
{
-using namespace hdf5;
/// Exception class thrown by failed hdf5 operations.
class Exception
@@ -2248,15 +2244,15 @@ public:
detail::HDF_Object_Holder src_attr_dtype_id_holder(
detail::Util::wrap(H5Aget_type, src_attr_id_holder.id),
detail::Util::wrapped_closer(H5Tclose));
-if (hdf5::H5Tget_class(src_attr_dtype_id_holder.id) == H5T_INTEGER)
+if (H5Tget_class(src_attr_dtype_id_holder.id) == H5T_INTEGER)
{
-if (hdf5::H5Tget_sign(src_attr_dtype_id_holder.id) == H5T_SGN_NONE)
+if (H5Tget_sign(src_attr_dtype_id_holder.id) == H5T_SGN_NONE)
{
unsigned long long tmp;
src_f.read(src_full_path, tmp);
dst_f.write_attribute(dst_full_path, tmp,
src_attr_dtype_id_holder.id);
}
-else if (hdf5::H5Tget_sign(src_attr_dtype_id_holder.id) ==
H5T_SGN_2)
+else if (H5Tget_sign(src_attr_dtype_id_holder.id) == H5T_SGN_2)
{
long long tmp;
src_f.read(src_full_path, tmp);
@@ -2267,17 +2263,17 @@ public:
throw Exception("error in H5Tget_sign");
}
}
-else if (hdf5::H5Tget_class(src_attr_dtype_id_holder.id) == H5T_FLOAT)
+else if (H5Tget_class(src_attr_dtype_id_holder.id) == H5T_FLOAT)
{
long double tmp;
src_f.read(src_full_path, tmp);
dst_f.write_attribute(dst_full_path, tmp,
src_attr_dtype_id_holder.id);
}
-else if (hdf5::H5Tget_class(src_attr_dtype_id_holder.id) == H5T_STRING)
+else if (H5Tget_class(src_attr_dtype_id_holder.id) == H5T_STRING)
{
std::string tmp;
src_f.read(src_full_path, tmp);
-auto is_varlen =
hdf5::H5Tis_variable_str(src_attr_dtype_id_holder.id);
+auto is_varlen = H5Tis_variable_str(src_attr_dtype_id_holder.id);
if (is_varlen < 0) throw Exception("error in H5Tis_variable_str");
if (is_varlen)
{
@@ -2286,12 +2282,12 @@ public:
else
{
// not varlen; now deal with array-of-size-1 chars
-int sz = hdf5::H5Tget_size(src_attr_dtype_id_holder.id);
+int sz = H5Tget_size(src_attr_dtype_id_holder.id);
if (sz == 0) throw Exception("error in H5Tget_size");
detail::HDF_Object_Holder src_attr_dspace_id_holder(
detail::Util::wrap(H5Aget_space, src_attr_id_holder.id),
detail::Util::wrapped_closer(H5Sclose));
-auto dspace_type =
hdf5::H5Sget_simple_extent_type(src_attr_dspace_id_holder.id);
+auto dspace_type =
H5Sget_simple_extent_type(src_attr_dspace_id_holder.id);
if (dspace_type == H5S_SCALAR)
{
dst_f.write_attribute(dst_full_path, tmp, 0);
=
src/hdf5-mod.cpp
=
--- a/src/hdf5-mod.cpp
+++ b/src/hdf5-mod.cpp
@@ -12,7 +12,6 @@
#include
using namespace std;
-using namespace hdf5;
struct B
{
View it on GitLab:
https://salsa.debian.org/med-team/fast5/commit/895c2bf864812eaa8904460fab0ed80eecec4e29
---
View it on GitLab:
https://salsa.debian.org/med-team/fast5/commit/895c2bf864812eaa8904460fab0ed80eecec4e29
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[med-svn] [Git][med-team/fast5][pristine-tar] pristine-tar data for fast5_0.6.5.orig.tar.gz
Afif Elghraoui pushed to branch pristine-tar at Debian Med / fast5 Commits: e6844900 by Afif Elghraoui at 2018-02-17T20:34:32-05:00 pristine-tar data for fast5_0.6.5.orig.tar.gz - - - - - 2 changed files: - + fast5_0.6.5.orig.tar.gz.delta - + fast5_0.6.5.orig.tar.gz.id Changes: = fast5_0.6.5.orig.tar.gz.delta = Binary files /dev/null and b/fast5_0.6.5.orig.tar.gz.delta differ = fast5_0.6.5.orig.tar.gz.id = --- /dev/null +++ b/fast5_0.6.5.orig.tar.gz.id @@ -0,0 +1 @@ +eb95d8c57d0a43f6f48a8998bed8fcd06bc4a144 View it on GitLab: https://salsa.debian.org/med-team/fast5/commit/e68449002b34608a4fbb2c53a4927b316ac39a78 --- View it on GitLab: https://salsa.debian.org/med-team/fast5/commit/e68449002b34608a4fbb2c53a4927b316ac39a78 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-commit@lists.alioth.debian.org http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/nanopolish] Pushed new tag upstream/0.9.0
Afif Elghraoui pushed new tag upstream/0.9.0 at Debian Med / nanopolish --- View it on GitLab: https://salsa.debian.org/med-team/nanopolish/tree/upstream/0.9.0 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-commit@lists.alioth.debian.org http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/nanopolish][pristine-tar] pristine-tar data for nanopolish_0.9.0.orig.tar.gz
Afif Elghraoui pushed to branch pristine-tar at Debian Med / nanopolish Commits: c435e1ba by Afif Elghraoui at 2018-02-17T18:03:37-05:00 pristine-tar data for nanopolish_0.9.0.orig.tar.gz - - - - - 2 changed files: - + nanopolish_0.9.0.orig.tar.gz.delta - + nanopolish_0.9.0.orig.tar.gz.id Changes: = nanopolish_0.9.0.orig.tar.gz.delta = Binary files /dev/null and b/nanopolish_0.9.0.orig.tar.gz.delta differ = nanopolish_0.9.0.orig.tar.gz.id = --- /dev/null +++ b/nanopolish_0.9.0.orig.tar.gz.id @@ -0,0 +1 @@ +56931e9b2be3226e7b3f18fe0b455d3bf3f0accd View it on GitLab: https://salsa.debian.org/med-team/nanopolish/commit/c435e1bafcff09a11bf689ee9096b0d2ecdaea9c --- View it on GitLab: https://salsa.debian.org/med-team/nanopolish/commit/c435e1bafcff09a11bf689ee9096b0d2ecdaea9c You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-commit@lists.alioth.debian.org http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/mummer] Pushed new tag debian/3.23+dfsg-3
Afif Elghraoui pushed new tag debian/3.23+dfsg-3 at Debian Med / mummer --- View it on GitLab: https://salsa.debian.org/med-team/mummer/tree/debian/3.23+dfsg-3 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-commit@lists.alioth.debian.org http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [python-cobra] 03/06: Merge tag 'upstream/0.11.0'
This is an automated email from the git hooks/post-receive script. afif pushed a commit to branch master in repository python-cobra. commit 030557f2cd3de31bb3a8c3f0e33058f2130fac28 Merge: ee24e38 362e088 Author: Afif Elghraoui <a...@debian.org> Date: Sun Feb 4 22:10:08 2018 -0500 Merge tag 'upstream/0.11.0' Upstream version 0.11.0 .gitignore| 1 + .travis.yml | 128 +++-- MANIFEST.in | 2 +- README.rst| 17 +- appveyor.yml | 83 +--- appveyor/build_glpk.py| 60 --- appveyor/install.ps1 | 85 appveyor/run_with_env.cmd | 88 cobra/__init__.py | 4 +- cobra/core/arraybasedmodel.py | 435 cobra/core/dictlist.py| 17 +- cobra/core/model.py | 149 ++ cobra/core/reaction.py| 21 +- cobra/design/__init__.py | 5 - cobra/design/design_algorithms.py | 17 - cobra/exceptions.py | 33 +- cobra/flux_analysis/__init__.py | 14 +- cobra/flux_analysis/deletion.py | 362 ++ cobra/flux_analysis/deletion_worker.py| 177 --- cobra/flux_analysis/double_deletion.py| 580 -- cobra/flux_analysis/gapfilling.py | 35 +- cobra/flux_analysis/loopless.py | 44 +- cobra/flux_analysis/moma.py | 128 + cobra/flux_analysis/parsimonious.py | 173 +-- cobra/flux_analysis/phenotype_phase_plane.py | 303 +-- cobra/flux_analysis/reaction.py | 8 +- cobra/flux_analysis/sampling.py | 17 +- cobra/flux_analysis/single_deletion.py| 383 -- cobra/flux_analysis/variability.py| 175 ++- cobra/io/dict.py | 25 +- cobra/io/json.py | 16 +- cobra/io/sbml3.py | 2 +- cobra/io/yaml.py | 14 +- cobra/manipulation/__init__.py| 4 +- cobra/manipulation/modify.py | 75 +-- cobra/solvers/__init__.py | 134 - cobra/solvers/cglpk.pyx | 566 - cobra/solvers/coin.py | 140 -- cobra/solvers/cplex_solver.py | 347 - cobra/solvers/cplex_solver_java.py| 326 cobra/solvers/esolver.py | 161 -- cobra/solvers/glpk.pxd| 218 cobra/solvers/glpk_solver.py | 276 -- cobra/solvers/glpk_solver_java.py | 372 -- cobra/solvers/gurobi_solver.py| 305 cobra/solvers/gurobi_solver_java.py | 285 --- cobra/solvers/mosek.py| 245 - cobra/solvers/parameters.py | 158 -- cobra/solvers/wrappers.py | 49 -- cobra/test/conftest.py| 31 +- cobra/test/test_flux_analysis.py | 416 cobra/test/test_io.py | 12 +- cobra/test/test_io_order.py | 92 cobra/test/test_manipulation.py | 44 +- cobra/test/test_model.py | 82 +-- cobra/test/test_solver_model.py | 133 ++--- cobra/test/test_solver_utils.py | 18 +- cobra/test/test_solvers.py| 271 -- cobra/test/test_util.py | 2 - cobra/topology/__init__.py| 5 - cobra/topology/reporter_metabolites.py| 9 - cobra/util/solver.py | 45 +- config.sh | 68 --- develop-requirements.txt | 20 +- documentation_builder/.gitignore | 1 + documentation_builder/autodoc.sh | 5 - documentation_builder/cobra.core.rst | 94 documentation_builder/cobra.design.rst| 22 - documentation_builder/cobra.flux_analysis.rst | 110 documentation_builder/cobra.io.rst| 46 -- documentation_builder/cobra.manipulation.rst | 46 -- documentation_builder/cobra.rst | 43 -- documentation_builder/cobra.topology.rst | 22 - documentation_b
[med-svn] [python-cobra] 05/06: Update patch
This is an automated email from the git hooks/post-receive script. afif pushed a commit to branch master in repository python-cobra. commit 2e7e2707534a788e306ef05b0bcdb1f4d3b3a7a9 Author: Afif Elghraoui <a...@debian.org> Date: Mon Feb 5 00:31:56 2018 -0500 Update patch --- debian/patches/mathjax.patch | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/debian/patches/mathjax.patch b/debian/patches/mathjax.patch index a3da754..39401df 100644 --- a/debian/patches/mathjax.patch +++ b/debian/patches/mathjax.patch @@ -6,7 +6,7 @@ Last-Update: 2015-06-20 This patch header follows DEP-3: http://dep.debian.net/deps/dep3/ --- python-cobra.orig/documentation_builder/conf.py +++ python-cobra/documentation_builder/conf.py -@@ -75,7 +75,7 @@ +@@ -95,7 +95,7 @@ # -- Options for HTML output -- -- Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/python-cobra.git ___ debian-med-commit mailing list debian-med-commit@lists.alioth.debian.org http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [python-cobra] annotated tag upstream/0.11.0 created (now 9c80feb)
This is an automated email from the git hooks/post-receive script. afif pushed a change to annotated tag upstream/0.11.0 in repository python-cobra. at 9c80feb (tag) tagging 362e088175c39da41e7af86c1e146d7055b66433 (commit) replaces upstream/0.9.0 tagged by Afif Elghraoui on Sun Feb 4 22:10:08 2018 -0500 - Log - Upstream version 0.11.0 Afif Elghraoui (1): New upstream version 0.11.0 --- No new revisions were added by this update. -- Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/python-cobra.git ___ debian-med-commit mailing list debian-med-commit@lists.alioth.debian.org http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [python-cobra] branch upstream updated (5444318 -> 362e088)
This is an automated email from the git hooks/post-receive script. afif pushed a change to branch upstream in repository python-cobra. from 5444318 New upstream version 0.9.0 new 362e088 New upstream version 0.11.0 The 1 revisions listed above as "new" are entirely new to this repository and will be described in separate emails. The revisions listed as "adds" were already present in the repository and have only been added to this reference. Summary of changes: .gitignore| 1 + .travis.yml | 128 +++-- MANIFEST.in | 2 +- README.rst| 17 +- appveyor.yml | 83 +--- appveyor/build_glpk.py| 60 --- appveyor/install.ps1 | 85 appveyor/run_with_env.cmd | 88 cobra/__init__.py | 4 +- cobra/core/arraybasedmodel.py | 435 cobra/core/dictlist.py| 17 +- cobra/core/model.py | 149 ++ cobra/core/reaction.py| 21 +- cobra/design/__init__.py | 5 - cobra/design/design_algorithms.py | 17 - cobra/exceptions.py | 33 +- cobra/flux_analysis/__init__.py | 14 +- cobra/flux_analysis/deletion.py | 362 ++ cobra/flux_analysis/deletion_worker.py| 177 --- cobra/flux_analysis/double_deletion.py| 580 -- cobra/flux_analysis/gapfilling.py | 35 +- cobra/flux_analysis/loopless.py | 44 +- cobra/flux_analysis/moma.py | 128 + cobra/flux_analysis/parsimonious.py | 173 +-- cobra/flux_analysis/phenotype_phase_plane.py | 303 +-- cobra/flux_analysis/reaction.py | 8 +- cobra/flux_analysis/sampling.py | 17 +- cobra/flux_analysis/single_deletion.py| 383 -- cobra/flux_analysis/variability.py| 175 ++- cobra/io/dict.py | 25 +- cobra/io/json.py | 16 +- cobra/io/sbml3.py | 2 +- cobra/io/yaml.py | 14 +- cobra/manipulation/__init__.py| 4 +- cobra/manipulation/modify.py | 75 +-- cobra/solvers/__init__.py | 134 - cobra/solvers/cglpk.pyx | 566 - cobra/solvers/coin.py | 140 -- cobra/solvers/cplex_solver.py | 347 - cobra/solvers/cplex_solver_java.py| 326 cobra/solvers/esolver.py | 161 -- cobra/solvers/glpk.pxd| 218 cobra/solvers/glpk_solver.py | 276 -- cobra/solvers/glpk_solver_java.py | 372 -- cobra/solvers/gurobi_solver.py| 305 cobra/solvers/gurobi_solver_java.py | 285 --- cobra/solvers/mosek.py| 245 - cobra/solvers/parameters.py | 158 -- cobra/solvers/wrappers.py | 49 -- cobra/test/conftest.py| 31 +- cobra/test/test_flux_analysis.py | 416 cobra/test/test_io.py | 12 +- cobra/test/test_io_order.py | 92 cobra/test/test_manipulation.py | 44 +- cobra/test/test_model.py | 82 +-- cobra/test/test_solver_model.py | 133 ++--- cobra/test/test_solver_utils.py | 18 +- cobra/test/test_solvers.py| 271 -- cobra/test/test_util.py | 2 - cobra/topology/__init__.py| 5 - cobra/topology/reporter_metabolites.py| 9 - cobra/util/solver.py | 45 +- config.sh | 68 --- develop-requirements.txt | 20 +- documentation_builder/.gitignore | 1 + documentation_builder/autodoc.sh | 5 - documentation_builder/cobra.core.rst | 94 documentation_builder/cobra.design.rst| 22 - documentation_builder/cobra.flux_analysis.rst | 110 documentation_builder/cobra.io.rst| 46 -- documentation_builder/cobra.manipulation.rst | 46 --
[med-svn] [python-cobra] 01/01: pristine-tar data for python-cobra_0.11.0.orig.tar.gz
This is an automated email from the git hooks/post-receive script. afif pushed a commit to branch pristine-tar in repository python-cobra. commit 96a42882d5378c60b7918c26ac13514ad35a679a Author: Afif Elghraoui <a...@debian.org> Date: Sun Feb 4 22:10:08 2018 -0500 pristine-tar data for python-cobra_0.11.0.orig.tar.gz --- python-cobra_0.11.0.orig.tar.gz.delta | Bin 0 -> 5474 bytes python-cobra_0.11.0.orig.tar.gz.id| 1 + 2 files changed, 1 insertion(+) diff --git a/python-cobra_0.11.0.orig.tar.gz.delta b/python-cobra_0.11.0.orig.tar.gz.delta new file mode 100644 index 000..446adc5 Binary files /dev/null and b/python-cobra_0.11.0.orig.tar.gz.delta differ diff --git a/python-cobra_0.11.0.orig.tar.gz.id b/python-cobra_0.11.0.orig.tar.gz.id new file mode 100644 index 000..384497e --- /dev/null +++ b/python-cobra_0.11.0.orig.tar.gz.id @@ -0,0 +1 @@ +6a7f0753a380ae9cf812e1bd2f833629e8be13d8 -- Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/python-cobra.git ___ debian-med-commit mailing list debian-med-commit@lists.alioth.debian.org http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [python-cobra] 01/06: TODO is to-done
This is an automated email from the git hooks/post-receive script. afif pushed a commit to branch master in repository python-cobra. commit ee24e38dd096b3fa867ae82b228432684b06425c Author: Afif Elghraoui <a...@debian.org> Date: Sun Feb 4 22:07:34 2018 -0500 TODO is to-done --- debian/TODO | 3 --- 1 file changed, 3 deletions(-) diff --git a/debian/TODO b/debian/TODO deleted file mode 100644 index 6b44abf..000 --- a/debian/TODO +++ /dev/null @@ -1,3 +0,0 @@ -* package new dependencies: - - swiglpk https://github.com/biosustain/swiglpk - - optlang https://github.com/biosustain/optlang -- Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/python-cobra.git ___ debian-med-commit mailing list debian-med-commit@lists.alioth.debian.org http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [nanopolish] branch master updated (9cfaa6b -> 64b18c3)
This is an automated email from the git hooks/post-receive script. afif pushed a change to branch master in repository nanopolish. from 9cfaa6b releasing package nanopolish version 0.8.5-1 new 0ad38d9 Remove all mentions of sse-support new 64b18c3 releasing package nanopolish version 0.8.5-2 The 2 revisions listed above as "new" are entirely new to this repository and will be described in separate emails. The revisions listed as "adds" were already present in the repository and have only been added to this reference. Summary of changes: debian/changelog | 6 ++ debian/control | 2 -- 2 files changed, 6 insertions(+), 2 deletions(-) -- Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/nanopolish.git ___ debian-med-commit mailing list debian-med-commit@lists.alioth.debian.org http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [nanopolish] annotated tag debian/0.8.5-2 created (now b4fd7a6)
This is an automated email from the git hooks/post-receive script. afif pushed a change to annotated tag debian/0.8.5-2 in repository nanopolish. at b4fd7a6 (tag) tagging 64b18c354b34ff0af1072ed7991e65d907d008e8 (commit) replaces debian/0.8.5-1 tagged by Afif Elghraoui on Sun Feb 4 19:39:18 2018 -0500 - Log - tagging package nanopolish version debian/0.8.5-2 -BEGIN PGP SIGNATURE- iQJEBAABCAAuFiEE6rcjomb2J+aAVWFfWbIwbzr53cEFAlp3p7YQHGFmaWZAZGVi aWFuLm9yZwAKCRBZsjBvOvndwV2QD/0eNvsdmdnPmpiEFWfqXoOwgE96WnQU/brz 24ZgNMuyKt7MTcowb2eKL/u3MGd7+hMFfIiuDFmj4IfdG1ltC2QZZOHPT/A/TrhT edU0A9Bj7/pQdOA+hgvIYERJTSD38krTrAZ8fauxhFvlCFA7EQq44+jccqB8Vi9B 7kSoy5T9AIQBZDS3HqaGIIBurx3B3c/vf7kTt5hmqSWlc95V0Tj7N/vqi+qtsLT+ xuoC5l7umR3J/vC7xufWV7Q6OnSNhCfXxThRt9uVqjkUhc0xw8sBh0phu6zxyrPi S8YuW9aV9RXolzLfA1DwCYCL/F5pnZQDEqXjtjEBso87wITD+NLgZaM+wTrvrKf6 YSNvCwYlbPLWHYI/0Gn16w4+5NoIvGXbs7sBpuFO/PxKLnqihy6w+k0d4fWCDwxh iFBnHQdHzUSL0d+e2mjas14UsmkKicZigtcJH6tDmQxBCC3yOwWflZdlhZdJynp/ w08MZUB5pqZ4A2sls/9BXyq7TnO+MIM65FazZmGzP5CpkT+4AtXu56K6GA621LiP /71NI+zRtoih7CjzaToHOmxWbnWdii7uXGikmMNXg5OcmYh4a3dwnJbWKWwD/rbd DTPykUt/WVihTKdB/syIwd4YcAGsaHCazk+UnvQ+JFQoliqfDa/b4VlmJ76tUtgZ qNw/eA8ihw== =sR0l -END PGP SIGNATURE- Afif Elghraoui (2): Remove all mentions of sse-support releasing package nanopolish version 0.8.5-2 --- No new revisions were added by this update. -- Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/nanopolish.git ___ debian-med-commit mailing list debian-med-commit@lists.alioth.debian.org http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
