[med-svn] [Git][med-team/community/helper-scripts][master] automatic update
Andreas Tille pushed to branch master at Debian Med / community / helper-scripts Commits: dc3ddeb2 by Andreas Tille at 2024-04-26T01:43:06+00:00 automatic update - - - - - 4 changed files: - debian-med-tests.txt - debian-science-tests.txt - outdated_med-packages.txt - python-team-tests.txt Changes: = debian-med-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Thu, 25 Apr 2024 13:42:06 + +Last-Update: Fri, 26 Apr 2024 01:42:06 + Source| Vote | Tasks | Tags ---+++-- = debian-science-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Thu, 25 Apr 2024 13:42:10 + +Last-Update: Fri, 26 Apr 2024 01:42:07 + Source | Vote | Tasks | Tags ---++-+- = outdated_med-packages.txt = The diff for this file was not included because it is too large. = python-team-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Thu, 25 Apr 2024 13:42:13 + +Last-Update: Fri, 26 Apr 2024 01:42:07 + Source | Vote | Tags ++ View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/dc3ddeb2c1fc15328dc67f53866cb4e5c4568576 -- View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/dc3ddeb2c1fc15328dc67f53866cb4e5c4568576 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/pplacer][master] Build-Depends: s/libmcl-ocaml-dev/libmcl14-ocaml-dev/ since pplacer builds...
Andreas Tille pushed to branch master at Debian Med / pplacer Commits: e1ce0a3c by Andreas Tille at 2024-04-25T17:24:11+02:00 Build-Depends: s/libmcl-ocaml-dev/libmcl14-ocaml-dev/ since pplacer builds only against old mcl14 featuring an OCAML patch - - - - - 2 changed files: - debian/changelog - debian/control Changes: = debian/changelog = @@ -7,6 +7,10 @@ pplacer (1.1~alpha19-7) UNRELEASED; urgency=medium [ Andreas Tille ] * Exclude build test for i386 in Salsa CI + * Build-Depends: s/libmcl-ocaml-dev/libmcl14-ocaml-dev/ since pplacer +builds only against old mcl14 featuring an OCAML patch +Closes: #1024889 + TODO: libmcl14 needs to pass new queue -- Mohammed Bilal Mon, 11 Apr 2022 01:29:59 +0530 = debian/control = @@ -11,11 +11,10 @@ Build-Depends: debhelper-compat (= 13), libcsv-ocaml-dev, libxmlm-ocaml-dev, libbatteries-ocaml-dev, - libmcl-ocaml-dev, + libmcl14-ocaml-dev, libocamlgsl-ocaml-dev, libsqlite3-ocaml-dev, libzip-ocaml-dev, - mcl, libounit-ocaml-dev Standards-Version: 4.6.0 Vcs-Browser: https://salsa.debian.org/med-team/pplacer View it on GitLab: https://salsa.debian.org/med-team/pplacer/-/commit/e1ce0a3c941d7cd49d1c0ae23bbd0ed0a40de9c2 -- View it on GitLab: https://salsa.debian.org/med-team/pplacer/-/commit/e1ce0a3c941d7cd49d1c0ae23bbd0ed0a40de9c2 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/sbmltoolbox] Pushed new tag debian/4.1.0-5.1
Andreas Tille pushed new tag debian/4.1.0-5.1 at Debian Med / sbmltoolbox -- View it on GitLab: https://salsa.debian.org/med-team/sbmltoolbox/-/tree/debian/4.1.0-5.1 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/sbmltoolbox][master] ACK NMU Non-maintainer upload
Andreas Tille pushed to branch master at Debian Med / sbmltoolbox
Commits:
cb058676 by Andreas Tille at 2024-04-25T14:21:58+02:00
ACK NMU Non-maintainer upload
- - - - -
2 changed files:
- debian/changelog
- debian/control
Changes:
=
debian/changelog
=
@@ -1,3 +1,10 @@
+sbmltoolbox (4.1.0-5.1) unstable; urgency=medium
+
+ * Non-maintainer upload
+ * Drop Depends: libsbml5 (Closes: #1069296)
+
+ -- Bastian Germann Fri, 19 Apr 2024 16:15:07 +0200
+
sbmltoolbox (4.1.0-5) unstable; urgency=medium
* Standards-Version: 4.5.0 (routine-update)
=
debian/control
=
@@ -13,7 +13,6 @@ Rules-Requires-Root: no
Package: sbmltoolbox
Architecture: all
Depends: ${misc:Depends},
- libsbml5,
libsbml5-octave,
octave
Recommends: qtoctave
View it on GitLab:
https://salsa.debian.org/med-team/sbmltoolbox/-/commit/cb0586760a93932cf3bb775ae6af3c897fc3b41f
--
View it on GitLab:
https://salsa.debian.org/med-team/sbmltoolbox/-/commit/cb0586760a93932cf3bb775ae6af3c897fc3b41f
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[med-svn] [Git][med-team/community/helper-scripts][master] automatic update
Andreas Tille pushed to branch master at Debian Med / community / helper-scripts Commits: 788ac800 by Andreas Tille at 2024-04-24T01:43:14+00:00 automatic update - - - - - 4 changed files: - debian-med-tests.txt - debian-science-tests.txt - outdated_med-packages.txt - python-team-tests.txt Changes: = debian-med-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Tue, 23 Apr 2024 13:42:05 + +Last-Update: Wed, 24 Apr 2024 01:42:06 + Source| Vote | Tasks | Tags ---+++-- = debian-science-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Tue, 23 Apr 2024 13:42:08 + +Last-Update: Wed, 24 Apr 2024 01:42:06 + Source | Vote | Tasks | Tags ---++-+- = outdated_med-packages.txt = The diff for this file was not included because it is too large. = python-team-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Tue, 23 Apr 2024 13:42:12 + +Last-Update: Wed, 24 Apr 2024 01:42:07 + Source | Vote | Tags ++ View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/788ac800a89c15c7f688970c91b231143d03004d -- View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/788ac800a89c15c7f688970c91b231143d03004d You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/community/helper-scripts][master] automatic update
Andreas Tille pushed to branch master at Debian Med / community / helper-scripts Commits: 8eb5c916 by Andreas Tille at 2024-04-23T01:42:34+00:00 automatic update - - - - - 4 changed files: - debian-med-tests.txt - debian-science-tests.txt - outdated_med-packages.txt - python-team-tests.txt Changes: = debian-med-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Mon, 22 Apr 2024 13:42:05 + +Last-Update: Tue, 23 Apr 2024 01:42:04 + Source| Vote | Tasks | Tags ---+++-- = debian-science-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Mon, 22 Apr 2024 13:42:09 + +Last-Update: Tue, 23 Apr 2024 01:42:05 + Source | Vote | Tasks | Tags ---++-+- = outdated_med-packages.txt = The diff for this file was not included because it is too large. = python-team-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Mon, 22 Apr 2024 13:42:12 + +Last-Update: Tue, 23 Apr 2024 01:42:05 + Source | Vote | Tags ++ View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/8eb5c9169bcd36e874d5589ccd5efe8affe08a7e -- View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/8eb5c9169bcd36e874d5589ccd5efe8affe08a7e You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/community/helper-scripts][master] automatic update
Andreas Tille pushed to branch master at Debian Med / community / helper-scripts Commits: 9d633660 by Andreas Tille at 2024-04-22T01:42:58+00:00 automatic update - - - - - 4 changed files: - debian-med-tests.txt - debian-science-tests.txt - outdated_med-packages.txt - python-team-tests.txt Changes: = debian-med-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Sun, 21 Apr 2024 13:42:05 + +Last-Update: Mon, 22 Apr 2024 01:42:05 + Source| Vote | Tasks | Tags ---+++-- = debian-science-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Sun, 21 Apr 2024 13:42:09 + +Last-Update: Mon, 22 Apr 2024 01:42:05 + Source | Vote | Tasks | Tags ---++-+- = outdated_med-packages.txt = The diff for this file was not included because it is too large. = python-team-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Sun, 21 Apr 2024 13:42:12 + +Last-Update: Mon, 22 Apr 2024 01:42:06 + Source | Vote | Tags ++ View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/9d633660b008a84217ea2f471425fcc4be51437d -- View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/9d633660b008a84217ea2f471425fcc4be51437d You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/community/helper-scripts][master] automatic update
Andreas Tille pushed to branch master at Debian Med / community / helper-scripts Commits: e6390c4d by Andreas Tille at 2024-04-20T01:43:11+00:00 automatic update - - - - - 4 changed files: - debian-med-tests.txt - debian-science-tests.txt - outdated_med-packages.txt - python-team-tests.txt Changes: = debian-med-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Fri, 19 Apr 2024 13:42:05 + +Last-Update: Sat, 20 Apr 2024 01:42:04 + Source| Vote | Tasks | Tags ---+++-- = debian-science-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Fri, 19 Apr 2024 13:42:10 + +Last-Update: Sat, 20 Apr 2024 01:42:04 + Source | Vote | Tasks | Tags ---++-+- = outdated_med-packages.txt = The diff for this file was not included because it is too large. = python-team-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Fri, 19 Apr 2024 13:42:13 + +Last-Update: Sat, 20 Apr 2024 01:42:04 + Source | Vote | Tags ++ View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/e6390c4d1f379836b5596c1298e7abaa983db6ec -- View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/e6390c4d1f379836b5596c1298e7abaa983db6ec You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/community/helper-scripts][master] automatic update
Andreas Tille pushed to branch master at Debian Med / community / helper-scripts Commits: 047f0187 by Andreas Tille at 2024-04-19T01:42:57+00:00 automatic update - - - - - 4 changed files: - debian-med-tests.txt - debian-science-tests.txt - outdated_med-packages.txt - python-team-tests.txt Changes: = debian-med-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Thu, 18 Apr 2024 13:42:05 + +Last-Update: Fri, 19 Apr 2024 01:42:04 + Source| Vote | Tasks | Tags ---+++-- = debian-science-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Thu, 18 Apr 2024 13:42:06 + +Last-Update: Fri, 19 Apr 2024 01:42:05 + Source | Vote | Tasks | Tags ---++-+- = outdated_med-packages.txt = The diff for this file was not included because it is too large. = python-team-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Thu, 18 Apr 2024 13:42:08 + +Last-Update: Fri, 19 Apr 2024 01:42:05 + Source | Vote | Tags ++ View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/047f0187d1262ff523ac97914a632d7e3e81a020 -- View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/047f0187d1262ff523ac97914a632d7e3e81a020 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/bcftools][pristine-tar] pristine-tar data for bcftools_1.20.orig.tar.gz
Andreas Tille pushed to branch pristine-tar at Debian Med / bcftools Commits: ace19810 by Andreas Tille at 2024-04-18T16:42:04+02:00 pristine-tar data for bcftools_1.20.orig.tar.gz - - - - - 2 changed files: - + bcftools_1.20.orig.tar.gz.delta - + bcftools_1.20.orig.tar.gz.id Changes: = bcftools_1.20.orig.tar.gz.delta = Binary files /dev/null and b/bcftools_1.20.orig.tar.gz.delta differ = bcftools_1.20.orig.tar.gz.id = @@ -0,0 +1 @@ +76e16e70810c784a099a85c64ebd6bddf47ee550 View it on GitLab: https://salsa.debian.org/med-team/bcftools/-/commit/ace19810f4e3868f12aa2eeea478d86a1e737cd1 -- View it on GitLab: https://salsa.debian.org/med-team/bcftools/-/commit/ace19810f4e3868f12aa2eeea478d86a1e737cd1 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/bcftools][master] 4 commits: Add missing Depends
Andreas Tille pushed to branch master at Debian Med / bcftools
Commits:
a46c2e25 by Andreas Tille at 2024-04-18T16:34:52+02:00
Add missing Depends
- - - - -
f9ef9e75 by Andreas Tille at 2024-04-18T16:35:07+02:00
routine-update: Standards-Version: 4.7.0
- - - - -
c413305a by Andreas Tille at 2024-04-18T17:14:25+02:00
Refresh patches
- - - - -
f2576d2a by Andreas Tille at 2024-04-18T17:19:00+02:00
Upload to unstable
- - - - -
5 changed files:
- debian/changelog
- debian/control
- debian/patches/series
- debian/patches/skip_new_test_failing_on_32bit.patch
- debian/patches/tests-pluginpath.patch
Changes:
=
debian/changelog
=
@@ -1,9 +1,15 @@
-bcftools (1.20-1) UNRELEASED; urgency=medium
+bcftools (1.20-1) unstable; urgency=medium
+ [ Charles Plessy ]
* Team upload.
* New upstream version
- -- Charles Plessy Thu, 18 Apr 2024 08:51:21 +0900
+ [ Andreas Tille ]
+ * Add missing Depends
+Closes: #1069234
+ * Standards-Version: 4.7.0 (routine-update)
+
+ -- Andreas Tille Thu, 18 Apr 2024 17:14:39 +0200
bcftools (1.19-1) unstable; urgency=medium
=
debian/control
=
@@ -12,7 +12,7 @@ Build-Depends: debhelper-compat (= 13),
libgsl-dev,
tabix ,
libio-pty-perl
-Standards-Version: 4.6.2
+Standards-Version: 4.7.0
Vcs-Browser: https://salsa.debian.org/med-team/bcftools
Vcs-Git: https://salsa.debian.org/med-team/bcftools.git
Homepage: https://samtools.github.io/bcftools/
@@ -22,13 +22,14 @@ Package: bcftools
Architecture: any
Depends: ${shlibs:Depends},
${misc:Depends},
- sse2-support [i386]
+ sse2-support [i386],
+ python3-gffutils,
+ python3-matplotlib
Recommends: perl
Suggests:
# These are needed for plot-vcfstats
python3,
python3-numpy,
- python3-matplotlib,
texlive-latex-recommended
Description: genomic variant calling and manipulation of VCF/BCF files
BCFtools is a set of utilities that manipulate variant calls in the
=
debian/patches/series
=
@@ -1,4 +1,3 @@
tests-pluginpath.patch
skip_new_test_failing_on_32bit.patch
2to3.patch
-typo.patch
=
debian/patches/skip_new_test_failing_on_32bit.patch
=
@@ -9,9 +9,9 @@ Description: Skip single test causing new failures
.
FIXME: This workaround needs to be reconsidered in future versions
bcftools.orig/test/test.pl
-+++ bcftools/test/test.pl
-@@ -206,7 +206,7 @@
+--- a/test/test.pl
b/test/test.pl
+@@ -212,7 +212,7 @@ run_test(\_vcf_query,$opts,in=>'que
run_test(\_vcf_query,$opts,in=>'query.filter.11',out=>'query.81.out',args=>q[-f'[%POS\\t%SAMPLE\\t%GT\\n]'
-e'N_PASS(GT="alt")==1']);
run_test(\_vcf_query,$opts,in=>'query.filter.11',out=>'query.80.out',args=>q[-f'[%POS\\t%SAMPLE\\t%GT\\n]'
-e'N_PASS(GT="alt")!=1']);
run_test(\_vcf_query,$opts,in=>'query',out=>'query.64.out',args=>q[-f'%CHROM\\t%POS\\t%INFO\\t%FORMAT\\n'
-s D,C]);
=
debian/patches/tests-pluginpath.patch
=
@@ -8,9 +8,9 @@ Description: Set the bcftools plugin path to search system
directories
Author: Afif Elghraoui
Forwarded: not-needed
Last-Update: 2015-11-09
bcftools.orig/test/test.pl
-+++ bcftools/test/test.pl
-@@ -1742,7 +1742,7 @@
+--- a/test/test.pl
b/test/test.pl
+@@ -1811,7 +1811,7 @@ sub test_vcf_plugin
{
my ($opts,%args) = @_;
if ( !$$opts{test_plugins} ) { return; }
View it on GitLab:
https://salsa.debian.org/med-team/bcftools/-/compare/0590dca4fe5ed1591d7a44fc573eb09199444bef...f2576d2a782334295689fe9c1d93c4ac97c287c8
--
View it on GitLab:
https://salsa.debian.org/med-team/bcftools/-/compare/0590dca4fe5ed1591d7a44fc573eb09199444bef...f2576d2a782334295689fe9c1d93c4ac97c287c8
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[med-svn] [Git][med-team/bcftools] Pushed new tag debian/1.20-1
Andreas Tille pushed new tag debian/1.20-1 at Debian Med / bcftools -- View it on GitLab: https://salsa.debian.org/med-team/bcftools/-/tree/debian/1.20-1 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/community/helper-scripts][master] automatic update
Andreas Tille pushed to branch master at Debian Med / community / helper-scripts Commits: 03b16863 by Andreas Tille at 2024-04-18T01:42:59+00:00 automatic update - - - - - 4 changed files: - debian-med-tests.txt - debian-science-tests.txt - outdated_med-packages.txt - python-team-tests.txt Changes: = debian-med-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Wed, 17 Apr 2024 13:42:05 + +Last-Update: Thu, 18 Apr 2024 01:42:06 + Source| Vote | Tasks | Tags ---+++-- = debian-science-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Wed, 17 Apr 2024 13:42:09 + +Last-Update: Thu, 18 Apr 2024 01:42:06 + Source | Vote | Tasks | Tags ---++-+- = outdated_med-packages.txt = The diff for this file was not included because it is too large. = python-team-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Wed, 17 Apr 2024 13:42:13 + +Last-Update: Thu, 18 Apr 2024 01:42:07 + Source | Vote | Tags ++ View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/03b16863c14decfc65f5b48ce75a2991d1388455 -- View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/03b16863c14decfc65f5b48ce75a2991d1388455 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/sambamba] Pushed new tag debian/1.0.1+dfsg-2
Andreas Tille pushed new tag debian/1.0.1+dfsg-2 at Debian Med / sambamba -- View it on GitLab: https://salsa.debian.org/med-team/sambamba/-/tree/debian/1.0.1+dfsg-2 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/community/helper-scripts][master] automatic update
Andreas Tille pushed to branch master at Debian Med / community / helper-scripts Commits: bfaac8b3 by Andreas Tille at 2024-04-16T01:43:25+00:00 automatic update - - - - - 4 changed files: - debian-med-tests.txt - debian-science-tests.txt - outdated_med-packages.txt - python-team-tests.txt Changes: = debian-med-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Mon, 15 Apr 2024 13:42:04 + +Last-Update: Tue, 16 Apr 2024 01:42:05 + Source| Vote | Tasks | Tags ---+++-- = debian-science-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Mon, 15 Apr 2024 13:42:08 + +Last-Update: Tue, 16 Apr 2024 01:42:05 + Source | Vote | Tasks | Tags ---++-+- = outdated_med-packages.txt = The diff for this file was not included because it is too large. = python-team-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Mon, 15 Apr 2024 13:42:11 + +Last-Update: Tue, 16 Apr 2024 01:42:05 + Source | Vote | Tags ++ View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/bfaac8b3e0bb4a70a66ab0648eec7a03148c808e -- View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/bfaac8b3e0bb4a70a66ab0648eec7a03148c808e You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/python-bx] Pushed new tag debian/0.11.0-4
Andreas Tille pushed new tag debian/0.11.0-4 at Debian Med / python-bx -- View it on GitLab: https://salsa.debian.org/med-team/python-bx/-/tree/debian/0.11.0-4 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/python-bx][master] 4 commits: Fix import statement s/cookbook/bx.cookbook/
Andreas Tille pushed to branch master at Debian Med / python-bx Commits: b0b0b724 by Andreas Tille at 2024-04-15T10:08:34+02:00 Fix import statement s/cookbook/bx.cookbook/ - - - - - cfbc7fe7 by Andreas Tille at 2024-04-15T10:09:48+02:00 Psyco is only available for Python = 2.6 - - - - - fc7241cb by Andreas Tille at 2024-04-15T10:10:11+02:00 routine-update: Standards-Version: 4.7.0 - - - - - 2214ed5b by Andreas Tille at 2024-04-15T10:15:30+02:00 routine-update: Ready to upload to unstable - - - - - 5 changed files: - debian/changelog - debian/control - + debian/patches/fix_import_cookbook.patch - + debian/patches/no_psyco.patch - debian/patches/series Changes: = debian/changelog = @@ -1,3 +1,13 @@ +python-bx (0.11.0-4) unstable; urgency=medium + + * Team upload. + * Fix import statement s/cookbook/bx.cookbook/ + * Psyco is only available for Python <= 2.6 +Closes: #1068996 + * Standards-Version: 4.7.0 (routine-update) + + -- Andreas Tille Mon, 15 Apr 2024 10:11:31 +0200 + python-bx (0.11.0-3) unstable; urgency=medium * Added patch to correct an include. Closes: #1066569 = debian/control = @@ -16,7 +16,7 @@ Build-Depends: debhelper-compat (= 13), python3-pytest-cython , python3-numpy , cython3 -Standards-Version: 4.6.2 +Standards-Version: 4.7.0 Vcs-Browser: https://salsa.debian.org/med-team/python-bx Vcs-Git: https://salsa.debian.org/med-team/python-bx.git Homepage: https://github.com/bxlab/bx-python = debian/patches/fix_import_cookbook.patch = @@ -0,0 +1,16 @@ +Description: Fix import statement s/cookbook/bx.cookbook/ +Bug-Debian: https://bugs.debian.org/1068996 +Author: Andreas Tille +Last-Updat: Mon, 15 Apr 2024 08:27:39 +0200 + +--- a/scripts/maf_tile_2.py b/scripts/maf_tile_2.py +@@ -31,7 +31,7 @@ usage: %prog list,of,species,to,keep seq + + import sys + +-from cookbook import doc_optparse ++from bx.cookbook import doc_optparse + + import bx.align as align + import bx.align.maf as maf = debian/patches/no_psyco.patch = @@ -0,0 +1,20 @@ +Description: psyco is only available for Python <= 2.6 +Bug-Debian: https://bugs.debian.org/1068996 +Author: Andreas Tille +Last-Updat: Mon, 15 Apr 2024 08:27:39 +0200 + +--- a/scripts/maf_word_frequency.py b/scripts/maf_word_frequency.py +@@ -12,12 +12,8 @@ usage: %prog n < maf_file + import string + import sys + +-import psyco +- + from bx.align import maf + +-psyco.profile() +- + + def __main__(): + motif_len = int(sys.argv[1]) = debian/patches/series = @@ -3,3 +3,5 @@ post-install-testing pytest8 shebang.patch fix_BIN_OFFSETS_MAX +fix_import_cookbook.patch +no_psyco.patch View it on GitLab: https://salsa.debian.org/med-team/python-bx/-/compare/c11ebb53f0cd21910117267f5d44d8270a7202c7...2214ed5bc1ca40d50972672132789fd5935f0421 -- View it on GitLab: https://salsa.debian.org/med-team/python-bx/-/compare/c11ebb53f0cd21910117267f5d44d8270a7202c7...2214ed5bc1ca40d50972672132789fd5935f0421 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/community/helper-scripts][master] automatic update
Andreas Tille pushed to branch master at Debian Med / community / helper-scripts Commits: f33ce8f3 by Andreas Tille at 2024-04-15T01:42:42+00:00 automatic update - - - - - 4 changed files: - debian-med-tests.txt - debian-science-tests.txt - outdated_med-packages.txt - python-team-tests.txt Changes: = debian-med-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Sun, 14 Apr 2024 13:42:04 + +Last-Update: Mon, 15 Apr 2024 01:42:05 + Source| Vote | Tasks | Tags ---+++-- = debian-science-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Sun, 14 Apr 2024 13:42:08 + +Last-Update: Mon, 15 Apr 2024 01:42:05 + Source | Vote | Tasks | Tags ---++-+- = outdated_med-packages.txt = The diff for this file was not included because it is too large. = python-team-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Sun, 14 Apr 2024 13:42:12 + +Last-Update: Mon, 15 Apr 2024 01:42:06 + Source | Vote | Tags ++ View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/f33ce8f3676a2f037e36f9f9e7dfd92f7c637494 -- View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/f33ce8f3676a2f037e36f9f9e7dfd92f7c637494 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/mlv-smile] Pushed new tag debian/1.47-9
Andreas Tille pushed new tag debian/1.47-9 at Debian Med / mlv-smile -- View it on GitLab: https://salsa.debian.org/med-team/mlv-smile/-/tree/debian/1.47-9 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/acedb][master] Fix more implicit declarations
Andreas Tille pushed to branch master at Debian Med / acedb
Commits:
e3e7870a by Andreas Tille at 2024-04-14T10:14:15+02:00
Fix more implicit declarations
- - - - -
3 changed files:
- debian/patches/acedb-parser-fixes.patch
- debian/patches/acedb-signal-fix.patch
- debian/patches/fix_implicit_declaration.patch
Changes:
=
debian/patches/acedb-parser-fixes.patch
=
@@ -5,11 +5,9 @@ Description: Fix missing declarations
`yyerror` - this is present but hidden by a CPP conditional
`yywrap` - this is not needed (grep for "YY_SKIP_YYWRAP") and
can be disabled
-diff --git a/waql/aql_.h b/waql/aql_.h
-index cde94a97896b..dd3b89116280 100644
--- a/waql/aql_.h
+++ b/waql/aql_.h
-@@ -448,7 +448,7 @@ char* aqlNodeTypeName (AqlNodeType inType);
+@@ -448,7 +448,7 @@ char* aqlNodeTypeName (AqlNodeType inTyp
char* aqlOpTypeName (AqlOpType inType);
char* aqlLocSourceTypeName (AqlLocSourceType inType);
@@ -18,8 +16,6 @@ index cde94a97896b..dd3b89116280 100644
/* predeclare lex.yy.c fns */
void yyerror (char *s);
#endif
-diff --git a/waql/aqlparse.l b/waql/aqlparse.l
-index 313375027957..bc232e0a4c48 100644
--- a/waql/aqlparse.l
+++ b/waql/aqlparse.l
@@ -102,6 +102,8 @@
@@ -31,8 +27,6 @@ index 313375027957..bc232e0a4c48 100644
letter[A-Za-z]
digit [0-9]
id{letter}({letter}|{digit}|"_")*
-diff --git a/waql/aqlparse.y b/waql/aqlparse.y
-index 9989831a4838..975ae325c14c 100644
--- a/waql/aqlparse.y
+++ b/waql/aqlparse.y
@@ -77,6 +77,8 @@ static int tokPos[1024];
=
debian/patches/acedb-signal-fix.patch
=
@@ -2,11 +2,9 @@ Author: Jeremy Sowden
Last-Update: Sat, 13 Apr 2024 22:46:17 +0100
Description: Add undeclared identifier
-diff --git a/w4/sigsubs.c b/w4/sigsubs.c
-index 2fd0c6ce9155..9d2942df1642 100644
--- a/w4/sigsubs.c
+++ b/w4/sigsubs.c
-@@ -467,6 +467,10 @@ static char *getSignalText(int sig_num)
+@@ -470,6 +470,10 @@ static char *getSignalText(int sig_num)
return "unknown";
@@ -17,7 +15,7 @@ index 2fd0c6ce9155..9d2942df1642 100644
#else
char *sig_text = NULL ;
-@@ -485,7 +489,7 @@ static char *getSignalText(int sig_num)
+@@ -488,7 +492,7 @@ static char *getSignalText(int sig_num)
char **signal_textlist = &(_sys_siglist[0]) ;
=
debian/patches/fix_implicit_declaration.patch
=
@@ -54,3 +54,22 @@ Forwarded: No (orphaned upstream)
+IdError idaAddNameType (IdCnxn ix, char *domain, BOOL isUnique, BOOL
isPrimary);
+
#endif /* !IDCURATE_ACEDB_H */
+--- a/wh/lex.h
b/wh/lex.h
+@@ -37,7 +37,7 @@
+ //
+
+ #include /* for DISK type */
+-
++#include
+
+ /* Returned by iskey, LEXKEY_IS_UNKNOWN: key is not known to acedb
+ *LEXKEY_IS_VOC: key is vocabulary entry only
+@@ -52,6 +52,7 @@ int lexMax(int t) ; /* Numbers of ent
+ int lexi2Max(int t) ; /* Numbers of cached entries of the t lexique */
+ int vocMax(int t) ;
+ void lex2clear (KEY key) ; /* call this function to clear the lex2 array */
++KEYSET lexAlphaClassList (BOOL redo);
+
+ LexKeyType iskey(KEY kk);
+ BOOL iskeyold(KEY kk); /* TRUE if
key is on disk or in first cache */
View it on GitLab:
https://salsa.debian.org/med-team/acedb/-/commit/e3e7870a9cec40aad7e70a50f95bae382bebcda3
--
View it on GitLab:
https://salsa.debian.org/med-team/acedb/-/commit/e3e7870a9cec40aad7e70a50f95bae382bebcda3
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[med-svn] [Git][med-team/acedb][master] Add missing declarations in w5
Andreas Tille pushed to branch master at Debian Med / acedb Commits: cf5f23d6 by Andreas Tille at 2024-04-14T10:00:01+02:00 Add missing declarations in w5 - - - - - 1 changed file: - debian/patches/fix_implicit_declaration.patch Changes: = debian/patches/fix_implicit_declaration.patch = @@ -34,3 +34,23 @@ Forwarded: No (orphaned upstream) /**/ +--- a/w5/idacedb.h b/w5/idacedb.h +@@ -49,4 +49,17 @@ ID* idaChildren (IdCnxn ix, char *domain + IdHistory* idaHistory (IdCnxn ix, char *domain, ID id, int version) ; + ID* idaChanged (IdCnxn ix, char *domain, char* timeStamp) ; + ++IdError idaError (IdCnxn ix); ++BOOL idaKill (IdCnxn ix, char* domain, ID id, mytime_t date); ++BOOL idaResurrect (IdCnxn ix, char *domain, ID id, mytime_t date); ++BOOL idaMerge (IdCnxn ix, char *domain, ID id, ID target, mytime_t date); ++BOOL idaAddName (IdCnxn ix, char *domain, ID id, char*nameType, char *newName, mytime_t date); ++BOOL idaRemoveName (IdCnxn ix, char *domain, ID id, char*nameType, char *name, mytime_t date); ++int idaVersion (IdCnxn ix, char *domain, ID id); ++BOOL idaLive (IdCnxn ix, char *domain, ID id); ++BOOL idaExists (IdCnxn ix, char *domain, ID id); ++IdError idaCreateDomain (IdCnxn ix, char *domain); ++IdError idaSetTemplate (IdCnxn ix, char *domain, char *template); ++IdError idaAddNameType (IdCnxn ix, char *domain, BOOL isUnique, BOOL isPrimary); ++ + #endif /* !IDCURATE_ACEDB_H */ View it on GitLab: https://salsa.debian.org/med-team/acedb/-/commit/cf5f23d6e56cec63f969302d03230fd52ca22ec5 -- View it on GitLab: https://salsa.debian.org/med-team/acedb/-/commit/cf5f23d6e56cec63f969302d03230fd52ca22ec5 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/acedb][master] Fixes for missing declarations
Andreas Tille pushed to branch master at Debian Med / acedb
Commits:
ba530b19 by Andreas Tille at 2024-04-14T07:15:32+02:00
Fixes for missing declarations
- - - - -
4 changed files:
- debian/changelog
- + debian/patches/acedb-parser-fixes.patch
- + debian/patches/acedb-signal-fix.patch
- debian/patches/series
Changes:
=
debian/changelog
=
@@ -1,9 +1,13 @@
acedb (4.9.39+dfsg.02-10) UNRELEASED; urgency=medium
+ [ Andreas Tille ]
* Add missing readline/history.h header
Closes: #1066334
* Build-Depends: libtirpc-dev
+ [ Jeremy Sowden ]
+ * Fixes for missing declarations
+
-- Andreas Tille Sat, 13 Apr 2024 07:52:18 +0200
acedb (4.9.39+dfsg.02-9) unstable; urgency=medium
=
debian/patches/acedb-parser-fixes.patch
=
@@ -0,0 +1,46 @@
+Author: Jeremy Sowden
+Last-Update: Sat, 13 Apr 2024 21:48:07 +0100
+Description: Fix missing declarations
+ `yylex` - this needs to be added to the yacc source
+ `yyerror` - this is present but hidden by a CPP conditional
+ `yywrap` - this is not needed (grep for "YY_SKIP_YYWRAP") and
can be disabled
+
+diff --git a/waql/aql_.h b/waql/aql_.h
+index cde94a97896b..dd3b89116280 100644
+--- a/waql/aql_.h
b/waql/aql_.h
+@@ -448,7 +448,7 @@ char* aqlNodeTypeName (AqlNodeType inType);
+ char* aqlOpTypeName (AqlOpType inType);
+ char* aqlLocSourceTypeName (AqlLocSourceType inType);
+
+-#if defined(IBM)
++#if defined(IBM) || defined(LINUX)
+ /* predeclare lex.yy.c fns */
+ void yyerror (char *s);
+ #endif
+diff --git a/waql/aqlparse.l b/waql/aqlparse.l
+index 313375027957..bc232e0a4c48 100644
+--- a/waql/aqlparse.l
b/waql/aqlparse.l
+@@ -102,6 +102,8 @@
+
+ %}
+
++%option noyywrap
++
+ letter[A-Za-z]
+ digit [0-9]
+ id{letter}({letter}|{digit}|"_")*
+diff --git a/waql/aqlparse.y b/waql/aqlparse.y
+index 9989831a4838..975ae325c14c 100644
+--- a/waql/aqlparse.y
b/waql/aqlparse.y
+@@ -77,6 +77,8 @@ static int tokPos[1024];
+
+ /**/
+
++int yylex(void);
++
+ %}
+
+ %union {
=
debian/patches/acedb-signal-fix.patch
=
@@ -0,0 +1,28 @@
+Author: Jeremy Sowden
+Last-Update: Sat, 13 Apr 2024 22:46:17 +0100
+Description: Add undeclared identifier
+
+diff --git a/w4/sigsubs.c b/w4/sigsubs.c
+index 2fd0c6ce9155..9d2942df1642 100644
+--- a/w4/sigsubs.c
b/w4/sigsubs.c
+@@ -467,6 +467,10 @@ static char *getSignalText(int sig_num)
+
+ return "unknown";
+
++#elif defined(LINUX)
++
++ return strsignal(sig_num);
++
+ #else
+
+ char *sig_text = NULL ;
+@@ -485,7 +489,7 @@ static char *getSignalText(int sig_num)
+
+ char **signal_textlist = &(_sys_siglist[0]) ;
+
+-#if defined(LINUX) || defined(OPTERON) || defined(HP)
++#if defined(OPTERON) || defined(HP)
+ int signal_max= _NSIG ;
+ #else
+ int signal_max= _sys_nsig ;
=
debian/patches/series
=
@@ -14,3 +14,5 @@ glibc2.32.patch
just_build_efetch.patch
glibc2.38.patch
fix_implicit_declaration.patch
+acedb-parser-fixes.patch
+acedb-signal-fix.patch
View it on GitLab:
https://salsa.debian.org/med-team/acedb/-/commit/ba530b1914146f24de719756f642ff8b5c40a1a5
--
View it on GitLab:
https://salsa.debian.org/med-team/acedb/-/commit/ba530b1914146f24de719756f642ff8b5c40a1a5
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[med-svn] [Git][med-team/acedb][master] Build-Depends: libtirpc-dev
Andreas Tille pushed to branch master at Debian Med / acedb Commits: 7c82fbd3 by Andreas Tille at 2024-04-13T08:55:39+02:00 Build-Depends: libtirpc-dev - - - - - 2 changed files: - debian/changelog - debian/control Changes: = debian/changelog = @@ -2,6 +2,7 @@ acedb (4.9.39+dfsg.02-10) UNRELEASED; urgency=medium * Add missing readline/history.h header Closes: #1066334 + * Build-Depends: libtirpc-dev -- Andreas Tille Sat, 13 Apr 2024 07:52:18 +0200 = debian/control = @@ -12,7 +12,8 @@ Build-Depends: debhelper-compat (= 13), csh, flex, libfl-dev, - bison + bison, + libtirpc-dev Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/med-team/acedb Vcs-Git: https://salsa.debian.org/med-team/acedb.git View it on GitLab: https://salsa.debian.org/med-team/acedb/-/commit/7c82fbd363d4d3f3de41f612bed3be73b7b2e706 -- View it on GitLab: https://salsa.debian.org/med-team/acedb/-/commit/7c82fbd363d4d3f3de41f612bed3be73b7b2e706 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/acedb][master] Add missing readline/history.h header
Andreas Tille pushed to branch master at Debian Med / acedb Commits: f7f8fb6e by Andreas Tille at 2024-04-13T08:37:14+02:00 Add missing readline/history.h header - - - - - 3 changed files: - debian/changelog - + debian/patches/fix_implicit_declaration.patch - debian/patches/series Changes: = debian/changelog = @@ -1,3 +1,10 @@ +acedb (4.9.39+dfsg.02-10) UNRELEASED; urgency=medium + + * Add missing readline/history.h header +Closes: #1066334 + + -- Andreas Tille Sat, 13 Apr 2024 07:52:18 +0200 + acedb (4.9.39+dfsg.02-9) unstable; urgency=medium [ Olivier Gayot ] = debian/patches/fix_implicit_declaration.patch = @@ -0,0 +1,36 @@ +Description: Add missing readline/history.h header +Bug-Debian: https://bugs.debian.org/1066334 +Author: Andreas Tille +Last-Update: Sat, 13 Apr 2024 07:52:18 +0200 +Forwarded: No (orphaned upstream) + +--- a/w1/acein.c b/w1/acein.c +@@ -46,6 +46,7 @@ + + #ifndef NO_READLINE + #include ++#include + #endif /*NO_READLINE */ + + /* #define DEBUG_STREAMLEVEL */ +--- a/w3/taqlmain.c b/w3/taqlmain.c +@@ -56,6 +56,7 @@ + #include + #include + #include ++#include + + /***/ + +--- a/w4/aceutils.c b/w4/aceutils.c +@@ -32,6 +32,7 @@ + + #include "acedb.h" + #include "aceio.h" ++#include + + /**/ + = debian/patches/series = @@ -13,3 +13,4 @@ libfl.patch glibc2.32.patch just_build_efetch.patch glibc2.38.patch +fix_implicit_declaration.patch View it on GitLab: https://salsa.debian.org/med-team/acedb/-/commit/f7f8fb6ee1d656cd424b9d91936fa05596d89f82 -- View it on GitLab: https://salsa.debian.org/med-team/acedb/-/commit/f7f8fb6ee1d656cd424b9d91936fa05596d89f82 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/community/helper-scripts][master] automatic update
Andreas Tille pushed to branch master at Debian Med / community / helper-scripts Commits: 2bff17cd by Andreas Tille at 2024-04-13T01:43:33+00:00 automatic update - - - - - 4 changed files: - debian-med-tests.txt - debian-science-tests.txt - outdated_med-packages.txt - python-team-tests.txt Changes: = debian-med-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Fri, 12 Apr 2024 13:42:05 + +Last-Update: Sat, 13 Apr 2024 01:42:04 + Source| Vote | Tasks | Tags ---+++-- = debian-science-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Fri, 12 Apr 2024 13:42:07 + +Last-Update: Sat, 13 Apr 2024 01:42:05 + Source | Vote | Tasks | Tags ---++-+- = outdated_med-packages.txt = The diff for this file was not included because it is too large. = python-team-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Fri, 12 Apr 2024 13:42:08 + +Last-Update: Sat, 13 Apr 2024 01:42:05 + Source | Vote | Tags ++ View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/2bff17cd507294a8c1dcc881220ba9e17a2ede2b -- View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/2bff17cd507294a8c1dcc881220ba9e17a2ede2b You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/community/helper-scripts][master] automatic update
Andreas Tille pushed to branch master at Debian Med / community / helper-scripts Commits: c89063b5 by Andreas Tille at 2024-04-12T01:42:46+00:00 automatic update - - - - - 4 changed files: - debian-med-tests.txt - debian-science-tests.txt - outdated_med-packages.txt - python-team-tests.txt Changes: = debian-med-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Thu, 11 Apr 2024 13:42:05 + +Last-Update: Fri, 12 Apr 2024 01:42:04 + Source| Vote | Tasks | Tags ---+++-- = debian-science-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Thu, 11 Apr 2024 13:42:07 + +Last-Update: Fri, 12 Apr 2024 01:42:04 + Source | Vote | Tasks | Tags ---++-+- = outdated_med-packages.txt = The diff for this file was not included because it is too large. = python-team-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Thu, 11 Apr 2024 13:42:08 + +Last-Update: Fri, 12 Apr 2024 01:42:05 + Source | Vote | Tags ++ View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/c89063b5573867d0d3a468eaec11e57278eb -- View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/c89063b5573867d0d3a468eaec11e57278eb You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/examl] Pushed new tag debian/3.0.22-5
Andreas Tille pushed new tag debian/3.0.22-5 at Debian Med / examl -- View it on GitLab: https://salsa.debian.org/med-team/examl/-/tree/debian/3.0.22-5 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/examl][master] 3 commits: Forward patch
Andreas Tille pushed to branch master at Debian Med / examl Commits: 9c829cce by Andreas Tille at 2024-04-11T16:19:45+02:00 Forward patch - - - - - d787d37a by Andreas Tille at 2024-04-11T16:20:02+02:00 routine-update: Standards-Version: 4.7.0 - - - - - 3694fbb9 by Andreas Tille at 2024-04-11T16:24:18+02:00 routine-update: Ready to upload to unstable - - - - - 3 changed files: - debian/changelog - debian/control - debian/patches/fix_implicit_declaration.patch Changes: = debian/changelog = @@ -1,9 +1,10 @@ -examl (3.0.22-5) UNRELEASED; urgency=medium +examl (3.0.22-5) unstable; urgency=medium * Add missing include Closes: #1066386 + * Standards-Version: 4.7.0 (routine-update) - -- Andreas Tille Thu, 11 Apr 2024 16:15:37 +0200 + -- Andreas Tille Thu, 11 Apr 2024 16:21:07 +0200 examl (3.0.22-4) unstable; urgency=medium = debian/control = @@ -7,7 +7,7 @@ Build-Depends: debhelper-compat (= 13), libopenmpi-dev, libsimde-dev, debhelper -Standards-Version: 4.6.2 +Standards-Version: 4.7.0 Vcs-Browser: https://salsa.debian.org/med-team/examl Vcs-Git: https://salsa.debian.org/med-team/examl.git Homepage: https://github.com/stamatak/ExaML = debian/patches/fix_implicit_declaration.patch = @@ -2,6 +2,7 @@ Desciption: Add missing include Bug-Debian: https://bugs.debian.org/1066386 Author: Andreas Tille Last-Update: Thu, 11 Apr 2024 16:15:37 +0200 +Forwarded: https://github.com/stamatak/ExaML/issues/20 --- a/examl/quartets.c +++ b/examl/quartets.c View it on GitLab: https://salsa.debian.org/med-team/examl/-/compare/ecd5d698ed445d64b49d6091f043eba02aca8968...3694fbb9c9524925387a703ecfd4f8cac0d32797 -- View it on GitLab: https://salsa.debian.org/med-team/examl/-/compare/ecd5d698ed445d64b49d6091f043eba02aca8968...3694fbb9c9524925387a703ecfd4f8cac0d32797 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/examl][master] Add missing include
Andreas Tille pushed to branch master at Debian Med / examl Commits: ecd5d698 by Andreas Tille at 2024-04-11T16:16:57+02:00 Add missing include - - - - - 3 changed files: - debian/changelog - + debian/patches/fix_implicit_declaration.patch - debian/patches/series Changes: = debian/changelog = @@ -1,3 +1,10 @@ +examl (3.0.22-5) UNRELEASED; urgency=medium + + * Add missing include +Closes: #1066386 + + -- Andreas Tille Thu, 11 Apr 2024 16:15:37 +0200 + examl (3.0.22-4) unstable; urgency=medium * Packaging update = debian/patches/fix_implicit_declaration.patch = @@ -0,0 +1,15 @@ +Desciption: Add missing include +Bug-Debian: https://bugs.debian.org/1066386 +Author: Andreas Tille +Last-Update: Thu, 11 Apr 2024 16:15:37 +0200 + +--- a/examl/quartets.c b/examl/quartets.c +@@ -40,6 +40,7 @@ + #include + #include + #include ++#include + #include + #include + #include = debian/patches/series = @@ -1,2 +1,3 @@ hardening.patch simde +fix_implicit_declaration.patch View it on GitLab: https://salsa.debian.org/med-team/examl/-/commit/ecd5d698ed445d64b49d6091f043eba02aca8968 -- View it on GitLab: https://salsa.debian.org/med-team/examl/-/commit/ecd5d698ed445d64b49d6091f043eba02aca8968 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/libpsortb][master] 3 commits: Build-Depends: s/pkg-config/pkgconf/
Andreas Tille pushed to branch master at Debian Med / libpsortb Commits: 38e9656b by Andreas Tille at 2024-04-11T15:55:13+02:00 Build-Depends: s/pkg-config/pkgconf/ - - - - - 1fa3f604 by Andreas Tille at 2024-04-11T15:55:30+02:00 routine-update: Standards-Version: 4.7.0 - - - - - e012d8d5 by Andreas Tille at 2024-04-11T15:56:33+02:00 routine-update: Ready to upload to unstable - - - - - 2 changed files: - debian/changelog - debian/control Changes: = debian/changelog = @@ -1,11 +1,13 @@ -libpsortb (1.0+dfsg-6) UNRELEASED; urgency=medium +libpsortb (1.0+dfsg-6) unstable; urgency=medium * Drop unused debug functions * Fix implicit declaration Closes: #1066475 * Add DEP3 Forwarded field + * Build-Depends: s/pkg-config/pkgconf/ + * Standards-Version: 4.7.0 (routine-update) - -- Andreas Tille Thu, 11 Apr 2024 15:13:23 +0200 + -- Andreas Tille Thu, 11 Apr 2024 15:55:51 +0200 libpsortb (1.0+dfsg-5) unstable; urgency=medium = debian/control = @@ -8,8 +8,8 @@ Build-Depends: debhelper-compat (= 13), libsvm-dev, libsquid-dev, libhmmer2-dev, - pkg-config -Standards-Version: 4.6.0 + pkgconf +Standards-Version: 4.7.0 Vcs-Browser: https://salsa.debian.org/med-team/libpsortb Vcs-Git: https://salsa.debian.org/med-team/libpsortb.git Homepage: https://www.psort.org/ View it on GitLab: https://salsa.debian.org/med-team/libpsortb/-/compare/cc41e1399501b51728f030db578f495ec888368d...e012d8d5064d68dce0d9c37283097e13bc72569a -- View it on GitLab: https://salsa.debian.org/med-team/libpsortb/-/compare/cc41e1399501b51728f030db578f495ec888368d...e012d8d5064d68dce0d9c37283097e13bc72569a You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/libpsortb] Pushed new tag debian/1.0+dfsg-6
Andreas Tille pushed new tag debian/1.0+dfsg-6 at Debian Med / libpsortb -- View it on GitLab: https://salsa.debian.org/med-team/libpsortb/-/tree/debian/1.0+dfsg-6 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/hmmer2] Pushed new tag debian/2.3.2+dfsg-12
Andreas Tille pushed new tag debian/2.3.2+dfsg-12 at Debian Med / hmmer2 -- View it on GitLab: https://salsa.debian.org/med-team/hmmer2/-/tree/debian/2.3.2+dfsg-12 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/ampliconnoise] Pushed new tag debian/1.29-11
Andreas Tille pushed new tag debian/1.29-11 at Debian Med / ampliconnoise -- View it on GitLab: https://salsa.debian.org/med-team/ampliconnoise/-/tree/debian/1.29-11 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/community/helper-scripts][master] automatic update
Andreas Tille pushed to branch master at Debian Med / community / helper-scripts Commits: f1f17e2f by Andreas Tille at 2024-04-11T01:42:30+00:00 automatic update - - - - - 4 changed files: - debian-med-tests.txt - debian-science-tests.txt - outdated_med-packages.txt - python-team-tests.txt Changes: = debian-med-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Wed, 10 Apr 2024 13:42:04 + +Last-Update: Thu, 11 Apr 2024 01:42:04 + Source| Vote | Tasks | Tags ---+++-- = debian-science-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Wed, 10 Apr 2024 13:42:08 + +Last-Update: Thu, 11 Apr 2024 01:42:04 + Source | Vote | Tasks | Tags ---++-+- = outdated_med-packages.txt = The diff for this file was not included because it is too large. = python-team-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Wed, 10 Apr 2024 13:42:12 + +Last-Update: Thu, 11 Apr 2024 01:42:04 + Source | Vote | Tags ++ View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/f1f17e2fd9f9050b70239475be107b2026434ee1 -- View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/f1f17e2fd9f9050b70239475be107b2026434ee1 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/microbiomeutil][master] 6 commits: Fix implicit declaration of function isprint
Andreas Tille pushed to branch master at Debian Med / microbiomeutil Commits: 759fcdab by Andreas Tille at 2024-04-10T15:39:08+02:00 Fix implicit declaration of function isprint - - - - - a4992f6e by Andreas Tille at 2024-04-10T15:39:57+02:00 routine-update: Standards-Version: 4.7.0 - - - - - 879ba250 by Andreas Tille at 2024-04-10T13:40:09+00:00 Use secure URI in Homepage field. Changes-By: lintian-brush Fixes: lintian: homepage-field-uses-insecure-uri See-also: https://lintian.debian.org/tags/homepage-field-uses-insecure-uri.html - - - - - b34d83bb by Andreas Tille at 2024-04-10T15:59:52+02:00 Lintian-overrides (see lintian bug #1017966) - - - - - 480abe4f by Andreas Tille at 2024-04-10T16:03:01+02:00 Add DEP3 field Forwarded: no (upstream is dead) - - - - - 4ca75718 by Andreas Tille at 2024-04-10T16:06:28+02:00 Upload to unstable - - - - - 11 changed files: - debian/changelog - debian/control - debian/patches/cross.patch - debian/patches/enable_tests_in_local_dir.patch - debian/patches/find_relocated_libraries.patch - debian/patches/find_relocated_resources.patch - debian/patches/fix_perl_interpreter.patch - debian/patches/hardening.patch - + debian/patches/implicit-function.patch - debian/patches/series - + debian/source/lintian-overrides Changes: = debian/changelog = @@ -1,3 +1,14 @@ +microbiomeutil (20101212+dfsg1-6) unstable; urgency=medium + + * Fix implicit declaration of function isprint +Closes: #1066532 + * Standards-Version: 4.7.0 (routine-update) + * Use secure URI in Homepage field. + * Lintian-overrides (see lintian bug #1017966) + * Add DEP3 field "Forwarded: no (upstream is dead)" + + -- Andreas Tille Wed, 10 Apr 2024 16:03:07 +0200 + microbiomeutil (20101212+dfsg1-5) unstable; urgency=medium [ Helmut Grohne ] = debian/control = @@ -8,10 +8,10 @@ Build-Depends: debhelper-compat (= 13), cdbfasta, ncbi-blast+-legacy, debhelper -Standards-Version: 4.6.0 +Standards-Version: 4.7.0 Vcs-Browser: https://salsa.debian.org/med-team/microbiomeutil Vcs-Git: https://salsa.debian.org/med-team/microbiomeutil.git -Homepage: http://microbiomeutil.sourceforge.net/ +Homepage: https://microbiomeutil.sourceforge.net/ Rules-Requires-Root: no Package: microbiomeutil = debian/patches/cross.patch = @@ -2,6 +2,7 @@ Last-Update: Sun, 9 Jan 2022 20:11:27 +0100 Author: Helmut Grohne Bug-Debian: https://bugs.debian.org/1003411 Description: Do not hard code the build architecture compiler +Forwarded: no (upstream is dead) --- microbiomeutil-20101212+dfsg1.orig/NAST-iEr/Makefile +++ microbiomeutil-20101212+dfsg1/NAST-iEr/Makefile = debian/patches/enable_tests_in_local_dir.patch = @@ -2,6 +2,7 @@ Author: Andreas Tille Last-Update: Wed, 20 Jan 2016 09:10:18 +0100 Description: To run build time tests enable running the scripts from build path +Forwarded: no (upstream is dead) --- a/NAST-iEr/run_NAST-iEr.pl +++ b/NAST-iEr/run_NAST-iEr.pl = debian/patches/find_relocated_libraries.patch = @@ -1,6 +1,8 @@ -# Due to liberal use of FindBin, ChimeraSlayer can't be run from a symlink. -# So I'm hard-coding the location to get around this. -# Patch added by Tim Booth, see changelog +Description: Due to liberal use of FindBin, ChimeraSlayer can't be run from a symlink. + So hard-coding the location to get around this. +Author: Tim Booth +Forwarded: no (upstream is dead) + --- a/ChimeraSlayer/ChimeraSlayer.pl +++ b/ChimeraSlayer/ChimeraSlayer.pl @@ -4,7 +4,9 @@ = debian/patches/find_relocated_resources.patch = @@ -1,5 +1,6 @@ Author: Tim Booth Description: Adapt path of some resources to Debian installation +Forwarded: no (upstream is dead) --- a/ChimeraSlayer/ChimeraSlayer.pl +++ b/ChimeraSlayer/ChimeraSlayer.pl = debian/patches/fix_perl_interpreter.patch = @@ -1,5 +1,6 @@ Author: Tim Booth Description: Remove wrong or fix perl interpreter location +Forwarded: no (upstream is dead) --- a/NAST-iEr/PerlLib/Fasta_reader.pm +++ b/NAST-iEr/PerlLib/Fasta_reader.pm = debian/patches/hardening.patch = @@ -1,6 +1,7 @@ Author: Andreas Tille LastChanged: Tue, 04 Jun 2013 10:35:17 +0200 Description: Enable propagation of hardening options +Forwarded: no (upstream is dead) --- a/NAST-iEr/Makefile +++ b/NAST-iEr/Makefile = debian/patches/implicit-func
[med-svn] [Git][med-team/microbiomeutil] Pushed new tag debian/20101212+dfsg1-6
Andreas Tille pushed new tag debian/20101212+dfsg1-6 at Debian Med / microbiomeutil -- View it on GitLab: https://salsa.debian.org/med-team/microbiomeutil/-/tree/debian/20101212+dfsg1-6 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/community/helper-scripts][master] automatic update
Andreas Tille pushed to branch master at Debian Med / community / helper-scripts Commits: d78d0f3b by Andreas Tille at 2024-04-10T01:43:35+00:00 automatic update - - - - - 4 changed files: - debian-med-tests.txt - debian-science-tests.txt - outdated_med-packages.txt - python-team-tests.txt Changes: = debian-med-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Tue, 09 Apr 2024 13:42:05 + +Last-Update: Wed, 10 Apr 2024 01:42:06 + Source| Vote | Tasks | Tags ---+++-- = debian-science-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Tue, 09 Apr 2024 13:42:09 + +Last-Update: Wed, 10 Apr 2024 01:42:07 + Source | Vote | Tasks | Tags ---++-+- = outdated_med-packages.txt = The diff for this file was not included because it is too large. = python-team-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Tue, 09 Apr 2024 13:42:12 + +Last-Update: Wed, 10 Apr 2024 01:42:07 + Source | Vote | Tags ++ View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/d78d0f3bd76a93eb6e585ba00d8833f4e59315f5 -- View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/d78d0f3bd76a93eb6e585ba00d8833f4e59315f5 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/community/helper-scripts][master] automatic update
Andreas Tille pushed to branch master at Debian Med / community / helper-scripts Commits: 8aee6801 by Andreas Tille at 2024-04-09T01:43:27+00:00 automatic update - - - - - 4 changed files: - debian-med-tests.txt - debian-science-tests.txt - outdated_med-packages.txt - python-team-tests.txt Changes: = debian-med-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Mon, 08 Apr 2024 13:42:04 + +Last-Update: Tue, 09 Apr 2024 01:42:04 + Source| Vote | Tasks | Tags ---+++-- = debian-science-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Mon, 08 Apr 2024 13:42:06 + +Last-Update: Tue, 09 Apr 2024 01:42:04 + Source | Vote | Tasks | Tags ---++-+- = outdated_med-packages.txt = The diff for this file was not included because it is too large. = python-team-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Mon, 08 Apr 2024 13:42:07 + +Last-Update: Tue, 09 Apr 2024 01:42:04 + Source | Vote | Tags ++ View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/8aee68012fdb0e933c606bb79c8033cf6437265e -- View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/8aee68012fdb0e933c606bb79c8033cf6437265e You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/community/helper-scripts][master] automatic update
Andreas Tille pushed to branch master at Debian Med / community / helper-scripts Commits: 605ce8e1 by Andreas Tille at 2024-04-08T01:43:42+00:00 automatic update - - - - - 4 changed files: - debian-med-tests.txt - debian-science-tests.txt - outdated_med-packages.txt - python-team-tests.txt Changes: = debian-med-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Sun, 07 Apr 2024 13:42:04 + +Last-Update: Mon, 08 Apr 2024 01:42:04 + Source| Vote | Tasks | Tags ---+++-- = debian-science-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Sun, 07 Apr 2024 13:42:08 + +Last-Update: Mon, 08 Apr 2024 01:42:04 + Source | Vote | Tasks | Tags ---++-+- = outdated_med-packages.txt = The diff for this file was not included because it is too large. = python-team-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Sun, 07 Apr 2024 13:42:12 + +Last-Update: Mon, 08 Apr 2024 01:42:04 + Source | Vote | Tags ++ View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/605ce8e1a08f8b15ed3a30fa938664cc7041f24b -- View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/605ce8e1a08f8b15ed3a30fa938664cc7041f24b You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/community/helper-scripts][master] automatic update
Andreas Tille pushed to branch master at Debian Med / community / helper-scripts Commits: a39003fe by Andreas Tille at 2024-04-06T01:43:44+00:00 automatic update - - - - - 4 changed files: - debian-med-tests.txt - debian-science-tests.txt - outdated_med-packages.txt - python-team-tests.txt Changes: = debian-med-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Fri, 05 Apr 2024 13:42:05 + +Last-Update: Sat, 06 Apr 2024 01:42:04 + Source| Vote | Tasks | Tags ---+++-- = debian-science-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Fri, 05 Apr 2024 13:42:09 + +Last-Update: Sat, 06 Apr 2024 01:42:04 + Source | Vote | Tasks | Tags ---++-+- = outdated_med-packages.txt = The diff for this file was not included because it is too large. = python-team-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Fri, 05 Apr 2024 13:42:13 + +Last-Update: Sat, 06 Apr 2024 01:42:05 + Source | Vote | Tags ++ View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/a39003fe4bf0b0a6c8dd463e483a278941dd9ed9 -- View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/a39003fe4bf0b0a6c8dd463e483a278941dd9ed9 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/reapr] Pushed new tag debian/1.0.18+dfsg-6
Andreas Tille pushed new tag debian/1.0.18+dfsg-6 at Debian Med / reapr -- View it on GitLab: https://salsa.debian.org/med-team/reapr/-/tree/debian/1.0.18+dfsg-6 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/reapr][master] 7 commits: Drop hard-coded dependency on shared library. ${shlib:Depends} is working these days
Andreas Tille pushed to branch master at Debian Med / reapr
Commits:
efab69cc by Andreas Tille at 2024-04-05T08:54:42+02:00
Drop hard-coded dependency on shared library. ${shlib:Depends} is working these
days
- - - - -
790959ed by Andreas Tille at 2024-04-05T08:55:17+02:00
routine-update: Standards-Version: 4.6.2
- - - - -
e84e210e by Andreas Tille at 2024-04-05T08:55:18+02:00
routine-update: debhelper-compat 13
- - - - -
42c9e55c by Andreas Tille at 2024-04-05T08:55:22+02:00
routine-update: Rules-Requires-Root: no
- - - - -
d067012a by Andreas Tille at 2024-04-05T06:55:23+00:00
Update renamed lintian tag names in lintian overrides.
Changes-By: lintian-brush
Fixes: lintian: renamed-tag
See-also: https://lintian.debian.org/tags/renamed-tag.html
- - - - -
1463e8c2 by Andreas Tille at 2024-04-05T08:55:48+02:00
routine-update: watch file standard 4
- - - - -
8a0effed by Andreas Tille at 2024-04-05T08:58:51+02:00
routine-update: Ready to upload to unstable
- - - - -
4 changed files:
- debian/changelog
- debian/control
- debian/source/lintian-overrides
- debian/watch
Changes:
=
debian/changelog
=
@@ -1,3 +1,21 @@
+reapr (1.0.18+dfsg-6) unstable; urgency=medium
+
+ * Team upload.
+
+ [ Matthias Klose ]
+ * Drop hard-coded dependency on shared library. ${shlib:Depends} is
+working these days.
+Closes: #1068432
+
+ [ Andreas Tille ]
+ * Standards-Version: 4.6.2 (routine-update)
+ * debhelper-compat 13 (routine-update)
+ * Rules-Requires-Root: no (routine-update)
+ Update renamed lintian tag names in lintian overrides.
+ * watch file standard 4 (routine-update)
+
+ -- Andreas Tille Fri, 05 Apr 2024 08:55:49 +0200
+
reapr (1.0.18+dfsg-5) unstable; urgency=medium
* Team upload.
=
debian/control
=
@@ -3,35 +3,35 @@ Maintainer: Debian Med Packaging Team
Section: science
Priority: optional
-Build-Depends: debhelper-compat (= 12),
+Build-Depends: debhelper-compat (= 13),
libbamtools-dev,
libtabixpp-dev,
- libhts-dev (>= 1.3),
+ libhts-dev,
zlib1g-dev,
asciidoctor,
- samtools (>= 1.3),
+ samtools,
bamtools,
smalt,
r-base,
snpomatic,
tabix,
libfile-copy-link-perl
-Standards-Version: 4.4.0
+Standards-Version: 4.6.2
Vcs-Browser: https://salsa.debian.org/med-team/reapr
Vcs-Git: https://salsa.debian.org/med-team/reapr.git
Homepage: https://www.sanger.ac.uk/science/tools/reapr
+Rules-Requires-Root: no
Package: reapr
Architecture: any
Depends: ${shlibs:Depends},
${misc:Depends},
- samtools (>= 1.3),
+ samtools,
bamtools,
smalt,
r-base,
snpomatic,
tabix,
- libtabixpp0,
libfile-copy-link-perl
Description: universal tool for genome assembly evaluation
REAPR is a tool that evaluates the accuracy of a genome assembly using mapped
=
debian/source/lintian-overrides
=
@@ -1,2 +1,2 @@
# Upstream does not provide signed tarballs
-reapr source: debian-watch-does-not-check-gpg-signature
+reapr source: debian-watch-does-not-check-openpgp-signature
=
debian/watch
=
@@ -1,3 +1,3 @@
-version=3
+version=4
opts=pasv,repacksuffix=+dfsg,dversionmangle=s/\+(debian|dfsg|ds|deb)(\.\d+)?$//
\
ftp://ftp.sanger.ac.uk/pub/resources/software/reapr/Reapr_([0-9.]+)\.tar\.gz
View it on GitLab:
https://salsa.debian.org/med-team/reapr/-/compare/2ee630a76ae3b5990202d8edc61740a931944971...8a0effede2ecdcb8afcf1ffd8482c6b43763257b
--
View it on GitLab:
https://salsa.debian.org/med-team/reapr/-/compare/2ee630a76ae3b5990202d8edc61740a931944971...8a0effede2ecdcb8afcf1ffd8482c6b43763257b
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[med-svn] [Git][med-team/pyode] Pushed new tag debian/1.2.0.dev15-5
Andreas Tille pushed new tag debian/1.2.0.dev15-5 at Debian Med / pyode -- View it on GitLab: https://salsa.debian.org/med-team/pyode/-/tree/debian/1.2.0.dev15-5 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/pyode][master] 5 commits: Add support for Cython 3
Andreas Tille pushed to branch master at Debian Med / pyode Commits: 9d57ecdc by Andreas Tille at 2024-04-05T08:42:29+02:00 Add support for Cython 3 - - - - - 5f48a257 by Andreas Tille at 2024-04-05T08:43:13+02:00 routine-update: Standards-Version: 4.6.2 - - - - - 978c2a8d by Andreas Tille at 2024-04-05T08:43:20+02:00 routine-update: Remove trailing whitespace in debian/changelog - - - - - 84feabd1 by Andreas Tille at 2024-04-05T08:43:20+02:00 routine-update: Build-Depends: s/dh-python/dh-sequence-python3/ - - - - - a6517818 by Andreas Tille at 2024-04-05T08:46:11+02:00 routine-update: Ready to upload to unstable - - - - - 5 changed files: - debian/changelog - debian/control - + debian/patches/Add-support-for-Cython-3.patch - debian/patches/series - debian/rules Changes: = debian/changelog = @@ -1,3 +1,18 @@ +pyode (1.2.0.dev15-5) unstable; urgency=medium + + * Team upload. + + [ Benjamin Drung ] + * Add support for Cython 3 +Closes: #1068428 + + [ Andreas Tille ] + * Standards-Version: 4.6.2 (routine-update) + * Remove trailing whitespace in debian/changelog (routine-update) + * Build-Depends: s/dh-python/dh-sequence-python3/ (routine-update) + + -- Andreas Tille Fri, 05 Apr 2024 08:43:30 +0200 + pyode (1.2.0.dev15-4) unstable; urgency=medium * Team upload. = debian/control = @@ -7,12 +7,12 @@ Section: python Priority: optional Testsuite: autopkgtest-pkg-python Build-Depends: debhelper-compat (= 13), - dh-python, + dh-sequence-python3, python3-all-dev, libode-dev, cython3, python3-setuptools -Standards-Version: 4.6.0 +Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/med-team/pyode Vcs-Git: https://salsa.debian.org/med-team/pyode.git Homepage: https://github.com/filipeabperes/Py3ODE = debian/patches/Add-support-for-Cython-3.patch = @@ -0,0 +1,36 @@ +From: Benjamin Drung +Date: Fri, 5 Apr 2024 02:21:21 +0200 +Subject: Add support for Cython 3 +Bug-Debian: https://bugs.debian.org/1068428 + +See https://cython.readthedocs.io/en/latest/src/userguide/migrating_to_cy30.html + +Signed-off-by: Benjamin Drung +--- + src/declarations.pyx | 6 +++--- + 1 file changed, 3 insertions(+), 3 deletions(-) + +diff --git a/src/declarations.pyx b/src/declarations.pyx +index b69a0e1..f274ad6 100755 +--- a/src/declarations.pyx b/src/declarations.pyx +@@ -80,8 +80,8 @@ cdef extern from "ode/ode.h": + dVector3 f2 + dVector3 t2 + +-ctypedef void dNearCallback(void* data, dGeomID o1, dGeomID o2) +-ctypedef dReal dHeightfieldGetHeight( void* p_user_data, int x, int z ) ++ctypedef void dNearCallback(void* data, dGeomID o1, dGeomID o2) except * ++ctypedef dReal dHeightfieldGetHeight( void* p_user_data, int x, int z ) except * + + ctypedef void dGetAABBFn (dGeomID, dReal aabb[6]) + ctypedef int dColliderFn (dGeomID o1, dGeomID o2, int flags, dContactGeom *contact, int skip) +@@ -322,7 +322,7 @@ cdef extern from "ode/ode.h": + void dBodySetGravityMode (dBodyID b, int mode) + int dBodyGetGravityMode (dBodyID b) + +-void dBodySetMovedCallback(dBodyID b, void (*callback)(dBodyID)) ++void dBodySetMovedCallback(dBodyID b, void (*callback)(dBodyID) except *) + + dGeomID dBodyGetFirstGeom (dBodyID b) + dGeomID dBodyGetNextGeom (dGeomID g) = debian/patches/series = @@ -1,3 +1,4 @@ 01_fix_setup.patch 02_add_shebang.patch 03_spellings.patch +Add-support-for-Cython-3.patch = debian/rules = @@ -5,4 +5,4 @@ export DEB_BUILD_MAINT_OPTIONS = hardening=+all export PYBUILD_NAME = pyode %: - dh $@ --with python3 --buildsystem=pybuild + dh $@ --buildsystem=pybuild View it on GitLab: https://salsa.debian.org/med-team/pyode/-/compare/1e56c15533040559154f03f79df13453bd55928d...a651781838f9ed7baf44ee260f6367d8f1b07edc -- View it on GitLab: https://salsa.debian.org/med-team/pyode/-/compare/1e56c15533040559154f03f79df13453bd55928d...a651781838f9ed7baf44ee260f6367d8f1b07edc You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/populations] Pushed new tag debian/1.2.33+svn0120106+dfsg-6ubuntu3
Andreas Tille pushed new tag debian/1.2.33+svn0120106+dfsg-6ubuntu3 at Debian Med / populations -- View it on GitLab: https://salsa.debian.org/med-team/populations/-/tree/debian/1.2.33+svn0120106+dfsg-6ubuntu3 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/populations][master] 9 commits: Apply patch from Ubunto containing
Andreas Tille pushed to branch master at Debian Med / populations
Commits:
6ab0328e by Andreas Tille at 2024-04-05T07:50:48+02:00
Apply patch from Ubunto containing
* Dont hard-code dependency on shared library.
* Properly clean the generated install file
- - - - -
c4d671de by Andreas Tille at 2024-04-05T07:51:25+02:00
routine-update: Standards-Version: 4.6.2
- - - - -
ae32b8e2 by Andreas Tille at 2024-04-05T07:51:25+02:00
routine-update: debhelper-compat 13
- - - - -
84a11259 by Andreas Tille at 2024-04-05T07:51:30+02:00
routine-update: Rules-Requires-Root: no
- - - - -
b837474c by Andreas Tille at 2024-04-05T05:51:55+00:00
Remove constraints unnecessary since bullseye (oldstable)
* Build-Depends: Replace dependency on transitional package libfreetype6-dev
with replacement libfreetype-dev (= 2.10.4+dfsg-1+deb11u1).
Changes-By: deb-scrub-obsolete
- - - - -
e67e67b9 by Andreas Tille at 2024-04-05T08:20:21+02:00
Drop broken version restriction on libfreetype-dev
- - - - -
b4870f37 by Andreas Tille at 2024-04-05T08:25:18+02:00
Lintian-overrides (see lintian bug #1017966)
- - - - -
c4fd7303 by Andreas Tille at 2024-04-05T08:27:50+02:00
Build-Depens: s/libfontconfig1-dev/libfontconfig-dev/
- - - - -
1e54f049 by Andreas Tille at 2024-04-05T08:29:44+02:00
Upload to unstable
- - - - -
4 changed files:
- debian/changelog
- debian/control
- debian/rules
- + debian/source/lintian-overrides
Changes:
=
debian/changelog
=
@@ -1,3 +1,24 @@
+populations (1.2.33+svn0120106+dfsg-6ubuntu3) unstable; urgency=medium
+
+ * Team upload.
+
+ [ Matthias Klose ]
+ * Don't hard-code dependency on shared library.
+Closes: #1068424
+ * Properly clean the generated install file
+
+ [ Andreas Tille ]
+ * Standards-Version: 4.6.2 (routine-update)
+ * debhelper-compat 13 (routine-update)
+ * Rules-Requires-Root: no (routine-update)
+ * Remove constraints unnecessary since bullseye (oldstable):
++ Build-Depends: Replace dependency on transitional package
+ libfreetype6-dev with replacement libfreetype-dev.
+ * Lintian-overrides (see lintian bug #1017966)
+ * Build-Depens: s/libfontconfig1-dev/libfontconfig-dev/
+
+ -- Andreas Tille Fri, 05 Apr 2024 08:28:03 +0200
+
populations (1.2.33+svn0120106+dfsg-6) unstable; urgency=medium
* Use DEB_HOST_GNU type for every arch since $(DEB_HOST_MULTIARCH)
=
debian/control
=
@@ -3,13 +3,13 @@ Maintainer: Debian Med Packaging Team
,
Section: science
Priority: optional
-Build-Depends: debhelper-compat (= 12),
+Build-Depends: debhelper-compat (= 13),
cmake,
qt5-qmake,
qtbase5-dev,
qttools5-dev,
- libfontconfig1-dev,
- libfreetype6-dev,
+ libfontconfig-dev,
+ libfreetype-dev,
libglib2.0-dev,
libice-dev,
libpng-dev,
@@ -18,16 +18,17 @@ Build-Depends: debhelper-compat (= 12),
libxext-dev,
libxrender-dev,
zlib1g-dev
-Standards-Version: 4.4.1
+Standards-Version: 4.6.2
Vcs-Browser: https://salsa.debian.org/med-team/populations
Vcs-Git: https://salsa.debian.org/med-team/populations.git
Homepage: https://www.bioinformatics.org/~tryphon/populations/
+Rules-Requires-Root: no
Package: populations
Architecture: any
Depends: ${shlibs:Depends},
${misc:Depends},
- libqt5xml5
+ ${lib:Depends}
Description: population genetic software
Populations is a population genetic software. It computes genetic
distances between populations or individuals. It builds phylogenetic
=
debian/rules
=
@@ -18,9 +18,15 @@ debian/%.install: debian/%.install.in
override_dh_auto_clean:
dh_testdir
+ rm -f debian/populations.install
rm -f src/populations
rm -rf CMakeFiles src/CMakeFiles Makefile src/Makefile src/config.h \
*.cmake src/cmake_install.cmake CMakeCache.txt \
install_manifest.txt
dh_auto_clean
dh_clean
+
+override_dh_gencontrol:
+ dh_gencontrol -- \
+ -Vlib:Depends=$(shell dpkg-query -W -f '$${Depends}' qtbase5-dev \
+ | sed -E 's/.*(libqt5xml[[:alnum:].-]+).*/\1/')
=
debian/source/lintian-overrides
=
@@ -0,0 +1,2 @@
+# See lintian bug #1017966
+populations source: source-is-missing [html/old/index.php.html]
View it on GitLab:
https://salsa.debian.org/med-team/populations/-/compare/fbc62f7a0a504e6abbde2576489b0fb42e6cbbca...1e54f0495b40f5585973a888009990851672b23a
--
View it on GitLab:
https://salsa.debian.org/med-team/populations/-/compare/fbc62f7a0a504e6abbde2576489b0fb42e6cbbca
[med-svn] [Git][med-team/ltrsift][master] Revert examples package, add not-installed to silence dh_missing
Andreas Tille pushed to branch master at Debian Med / ltrsift
Commits:
0ea4fbd9 by Andreas Tille at 2024-04-05T07:42:17+02:00
Revert examples package, add not-installed to silence dh_missing
- - - - -
4 changed files:
- debian/changelog
- debian/control
- − debian/ltrsift-examples.examples
- + debian/not-installed
Changes:
=
debian/changelog
=
@@ -16,7 +16,6 @@ ltrsift (1.0.2-10) UNRELEASED; urgency=medium
(already present in machine-readable debian/copyright).
* Fix day-of-week for changelog entry 1.0.1-1.
* watch file standard 4 (routine-update)
- * Add new binary package ltrsift with example data.
-- Sascha Steinbiss Thu, 04 Apr 2024 22:16:04 +0200
=
debian/control
=
@@ -27,18 +27,3 @@ Description: postprocessing and classification of LTR
retrotransposons
structure in a hierarchical fashion, allowing the user to "sift" through the
sometimes large results of de novo prediction software. It also offers
customizable filtering and classification functionality.
-
-Package: ltrsift-examples
-Architecture: all
-Depends: ${misc:Depends},
-Suggests: ltrsift
-Description: postprocessing and classification of LTR retrotransposons (sample
data)
- LTRsift is a graphical desktop tool for semi-automatic postprocessing of de
- novo predicted LTR retrotransposon annotations, such as the ones generated by
- LTRharvest and LTRdigest. Its user-friendly interface displays LTR
- retrotransposon candidates, their putative families and their internal
- structure in a hierarchical fashion, allowing the user to "sift" through the
- sometimes large results of de novo prediction software. It also offers
- customizable filtering and classification functionality.
- .
- This package contains example data to test the LTRsift functionality.
=
debian/ltrsift-examples.examples deleted
=
@@ -1 +0,0 @@
-debian/tmp/usr/sample_data/*
=
debian/not-installed
=
@@ -0,0 +1 @@
+usr/sample_data
View it on GitLab:
https://salsa.debian.org/med-team/ltrsift/-/commit/0ea4fbd94b5c138ca9a23f63a6b349f5bff197f7
--
View it on GitLab:
https://salsa.debian.org/med-team/ltrsift/-/commit/0ea4fbd94b5c138ca9a23f63a6b349f5bff197f7
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[med-svn] [Git][med-team/community/helper-scripts][master] automatic update
Andreas Tille pushed to branch master at Debian Med / community / helper-scripts Commits: fbbaf8ea by Andreas Tille at 2024-04-05T01:43:39+00:00 automatic update - - - - - 4 changed files: - debian-med-tests.txt - debian-science-tests.txt - outdated_med-packages.txt - python-team-tests.txt Changes: = debian-med-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Thu, 04 Apr 2024 13:42:04 + +Last-Update: Fri, 05 Apr 2024 01:42:04 + Source| Vote | Tasks | Tags ---+++-- = debian-science-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Thu, 04 Apr 2024 13:42:09 + +Last-Update: Fri, 05 Apr 2024 01:42:04 + Source | Vote | Tasks | Tags ---++-+- = outdated_med-packages.txt = The diff for this file was not included because it is too large. = python-team-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Thu, 04 Apr 2024 13:42:12 + +Last-Update: Fri, 05 Apr 2024 01:42:05 + Source | Vote | Tags ++ View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/fbbaf8ea02d5d5739ad151a6c3dde553bdcf5a81 -- View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/fbbaf8ea02d5d5739ad151a6c3dde553bdcf5a81 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/community/helper-scripts][master] automatic update
Andreas Tille pushed to branch master at Debian Med / community / helper-scripts Commits: 17c19352 by Andreas Tille at 2024-04-04T01:43:33+00:00 automatic update - - - - - 4 changed files: - debian-med-tests.txt - debian-science-tests.txt - outdated_med-packages.txt - python-team-tests.txt Changes: = debian-med-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Wed, 03 Apr 2024 13:42:06 + +Last-Update: Thu, 04 Apr 2024 01:42:05 + Source| Vote | Tasks | Tags ---+++-- = debian-science-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Wed, 03 Apr 2024 13:42:10 + +Last-Update: Thu, 04 Apr 2024 01:42:05 + Source | Vote | Tasks | Tags ---++-+- = outdated_med-packages.txt = The diff for this file was not included because it is too large. = python-team-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Wed, 03 Apr 2024 13:42:13 + +Last-Update: Thu, 04 Apr 2024 01:42:06 + Source | Vote | Tags ++ View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/17c193520185be41c6b458ede734f0a1ef3fcb96 -- View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/17c193520185be41c6b458ede734f0a1ef3fcb96 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/community/helper-scripts][master] automatic update
Andreas Tille pushed to branch master at Debian Med / community / helper-scripts Commits: 759f0ce2 by Andreas Tille at 2024-04-03T01:43:35+00:00 automatic update - - - - - 4 changed files: - debian-med-tests.txt - debian-science-tests.txt - outdated_med-packages.txt - python-team-tests.txt Changes: = debian-med-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Tue, 02 Apr 2024 13:42:04 + +Last-Update: Wed, 03 Apr 2024 01:42:04 + Source| Vote | Tasks | Tags ---+++-- = debian-science-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Tue, 02 Apr 2024 13:42:08 + +Last-Update: Wed, 03 Apr 2024 01:42:04 + Source | Vote | Tasks | Tags ---++-+- = outdated_med-packages.txt = The diff for this file was not included because it is too large. = python-team-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Tue, 02 Apr 2024 13:42:12 + +Last-Update: Wed, 03 Apr 2024 01:42:04 + Source | Vote | Tags ++ View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/759f0ce2137902ad0370a078841ce88d0900501f -- View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/759f0ce2137902ad0370a078841ce88d0900501f You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/community/helper-scripts][master] automatic update
Andreas Tille pushed to branch master at Debian Med / community / helper-scripts Commits: a66f6ec1 by Andreas Tille at 2024-04-02T01:43:36+00:00 automatic update - - - - - 4 changed files: - debian-med-tests.txt - debian-science-tests.txt - outdated_med-packages.txt - python-team-tests.txt Changes: = debian-med-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Mon, 01 Apr 2024 13:42:05 + +Last-Update: Tue, 02 Apr 2024 01:42:05 + Source| Vote | Tasks | Tags ---+++-- = debian-science-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Mon, 01 Apr 2024 13:42:09 + +Last-Update: Tue, 02 Apr 2024 01:42:06 + Source | Vote | Tasks | Tags ---++-+- = outdated_med-packages.txt = The diff for this file was not included because it is too large. = python-team-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Mon, 01 Apr 2024 13:42:12 + +Last-Update: Tue, 02 Apr 2024 01:42:06 + Source | Vote | Tags ++ View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/a66f6ec192124a5db937859839d6cb2e28e5bcaf -- View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/a66f6ec192124a5db937859839d6cb2e28e5bcaf You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/community/helper-scripts][master] automatic update
Andreas Tille pushed to branch master at Debian Med / community / helper-scripts Commits: 7b13e338 by Andreas Tille at 2024-04-01T01:43:39+00:00 automatic update - - - - - 4 changed files: - debian-med-tests.txt - debian-science-tests.txt - outdated_med-packages.txt - python-team-tests.txt Changes: = debian-med-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Sun, 31 Mar 2024 13:42:05 + +Last-Update: Mon, 01 Apr 2024 01:42:04 + Source| Vote | Tasks | Tags ---+++-- = debian-science-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Sun, 31 Mar 2024 13:42:09 + +Last-Update: Mon, 01 Apr 2024 01:42:05 + Source | Vote | Tasks | Tags ---++-+- = outdated_med-packages.txt = The diff for this file was not included because it is too large. = python-team-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Sun, 31 Mar 2024 13:42:13 + +Last-Update: Mon, 01 Apr 2024 01:42:05 + Source | Vote | Tags ++ View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/7b13e338c3df700367003669216ba57b5485851c -- View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/7b13e338c3df700367003669216ba57b5485851c You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/libsbml] Pushed new tag debian/5.20.2+dfsg-3
Andreas Tille pushed new tag debian/5.20.2+dfsg-3 at Debian Med / libsbml -- View it on GitLab: https://salsa.debian.org/med-team/libsbml/-/tree/debian/5.20.2+dfsg-3 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/libsbml][master] 3 commits: Drop the Python3-Version attribute
Andreas Tille pushed to branch master at Debian Med / libsbml Commits: 9f4614e7 by Andreas Tille at 2024-03-30T20:46:19+01:00 Drop the Python3-Version attribute - - - - - 6e7de4ce by Andreas Tille at 2024-03-30T21:36:20+01:00 Fix doc-base file - - - - - d1ae2552 by Andreas Tille at 2024-03-30T21:36:50+01:00 Upload to unstable - - - - - 3 changed files: - debian/changelog - debian/control - debian/libsbml5-doc.doc-base Changes: = debian/changelog = @@ -1,3 +1,11 @@ +libsbml (5.20.2+dfsg-3) unstable; urgency=medium + + * Drop the Python3-Version attribute +Closes: #1068105 + * Fix doc-base file + + -- Andreas Tille Sat, 30 Mar 2024 21:36:28 +0100 + libsbml (5.20.2+dfsg-2.1) unstable; urgency=medium * Non-maintainer upload. = debian/control = @@ -36,7 +36,6 @@ Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/med-team/libsbml Vcs-Git: https://salsa.debian.org/med-team/libsbml.git Homepage: http://www.sbml.org/ -X-Python3-Version: 3.11 Rules-Requires-Root: no Testsuite: autopkgtest-pkg-python = debian/libsbml5-doc.doc-base = @@ -8,5 +8,5 @@ Abstract: System Biology Markup Language library Section: Science/Biology Format: HTML -Files: /usr/share/doc/libsbml5/*api/ /usr/share/doc/libsbml5/index.html -Index: /usr/share/doc/libsbml5/index.html +Files: /usr/share/doc/libsbml5-dev/*api/ /usr/share/doc/libsbml5/index.html +Index: /usr/share/doc/libsbml5-dev/index.html View it on GitLab: https://salsa.debian.org/med-team/libsbml/-/compare/927b09bb068dabaffac986abf2b742a24f0c43ca...d1ae2552405e41950478f0693b164b1523b47d79 -- View it on GitLab: https://salsa.debian.org/med-team/libsbml/-/compare/927b09bb068dabaffac986abf2b742a24f0c43ca...d1ae2552405e41950478f0693b164b1523b47d79 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/community/helper-scripts][master] automatic update
Andreas Tille pushed to branch master at Debian Med / community / helper-scripts Commits: 06e14788 by Andreas Tille at 2024-03-30T01:43:19+00:00 automatic update - - - - - 4 changed files: - debian-med-tests.txt - debian-science-tests.txt - outdated_med-packages.txt - python-team-tests.txt Changes: = debian-med-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Fri, 29 Mar 2024 13:42:05 + +Last-Update: Sat, 30 Mar 2024 01:42:04 + Source| Vote | Tasks | Tags ---+++-- = debian-science-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Fri, 29 Mar 2024 13:42:07 + +Last-Update: Sat, 30 Mar 2024 01:42:04 + Source | Vote | Tasks | Tags ---++-+- = outdated_med-packages.txt = The diff for this file was not included because it is too large. = python-team-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Fri, 29 Mar 2024 13:42:08 + +Last-Update: Sat, 30 Mar 2024 01:42:05 + Source | Vote | Tags ++ View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/06e14788f671451415821c68e7e014ab642ae139 -- View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/06e14788f671451415821c68e7e014ab642ae139 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/community/helper-scripts][master] automatic update
Andreas Tille pushed to branch master at Debian Med / community / helper-scripts Commits: 8ec82b6d by Andreas Tille at 2024-03-29T01:43:28+00:00 automatic update - - - - - 4 changed files: - debian-med-tests.txt - debian-science-tests.txt - outdated_med-packages.txt - python-team-tests.txt Changes: = debian-med-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Thu, 28 Mar 2024 13:42:04 + +Last-Update: Fri, 29 Mar 2024 01:42:04 + Source| Vote | Tasks | Tags ---+++-- = debian-science-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Thu, 28 Mar 2024 13:42:09 + +Last-Update: Fri, 29 Mar 2024 01:42:05 + Source | Vote | Tasks | Tags ---++-+- = outdated_med-packages.txt = The diff for this file was not included because it is too large. = python-team-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Thu, 28 Mar 2024 13:42:12 + +Last-Update: Fri, 29 Mar 2024 01:42:05 + Source | Vote | Tags ++ View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/8ec82b6d3df1107433b8f80fe55695f023c26cf3 -- View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/8ec82b6d3df1107433b8f80fe55695f023c26cf3 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/ctn] Pushed new tag debian/3.2.0_dfsg-7.1
Andreas Tille pushed new tag debian/3.2.0_dfsg-7.1 at Debian Med / ctn -- View it on GitLab: https://salsa.debian.org/med-team/ctn/-/tree/debian/3.2.0_dfsg-7.1 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/community/helper-scripts][master] automatic update
Andreas Tille pushed to branch master at Debian Med / community / helper-scripts Commits: dfc23f5a by Andreas Tille at 2024-03-28T01:43:22+00:00 automatic update - - - - - 4 changed files: - debian-med-tests.txt - debian-science-tests.txt - outdated_med-packages.txt - python-team-tests.txt Changes: = debian-med-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Wed, 27 Mar 2024 13:42:05 + +Last-Update: Thu, 28 Mar 2024 01:42:05 + Source| Vote | Tasks | Tags ---+++-- = debian-science-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Wed, 27 Mar 2024 13:42:09 + +Last-Update: Thu, 28 Mar 2024 01:42:05 + Source | Vote | Tasks | Tags ---++-+- = outdated_med-packages.txt = The diff for this file was not included because it is too large. = python-team-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Wed, 27 Mar 2024 13:42:12 + +Last-Update: Thu, 28 Mar 2024 01:42:05 + Source | Vote | Tags ++ View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/dfc23f5a4000f9f605a9c9cf6a3df61ac0b774f2 -- View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/dfc23f5a4000f9f605a9c9cf6a3df61ac0b774f2 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/community/helper-scripts][master] automatic update
Andreas Tille pushed to branch master at Debian Med / community / helper-scripts Commits: 2dccb63a by Andreas Tille at 2024-03-27T01:43:22+00:00 automatic update - - - - - 4 changed files: - debian-med-tests.txt - debian-science-tests.txt - outdated_med-packages.txt - python-team-tests.txt Changes: = debian-med-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Tue, 26 Mar 2024 13:42:04 + +Last-Update: Wed, 27 Mar 2024 01:42:05 + Source| Vote | Tasks | Tags ---+++-- = debian-science-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Tue, 26 Mar 2024 13:42:09 + +Last-Update: Wed, 27 Mar 2024 01:42:06 + Source | Vote | Tasks | Tags ---++-+- = outdated_med-packages.txt = The diff for this file was not included because it is too large. = python-team-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Tue, 26 Mar 2024 13:42:12 + +Last-Update: Wed, 27 Mar 2024 01:42:07 + Source | Vote | Tags ++ View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/2dccb63abe890fb5e47b09cbcbc0db84391e3171 -- View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/2dccb63abe890fb5e47b09cbcbc0db84391e3171 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/community/helper-scripts][master] automatic update
Andreas Tille pushed to branch master at Debian Med / community / helper-scripts Commits: 8f5d77c6 by Andreas Tille at 2024-03-26T01:43:11+00:00 automatic update - - - - - 4 changed files: - debian-med-tests.txt - debian-science-tests.txt - outdated_med-packages.txt - python-team-tests.txt Changes: = debian-med-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Mon, 25 Mar 2024 13:42:05 + +Last-Update: Tue, 26 Mar 2024 01:42:05 + Source| Vote | Tasks | Tags ---+++-- = debian-science-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Mon, 25 Mar 2024 13:42:09 + +Last-Update: Tue, 26 Mar 2024 01:42:05 + Source | Vote | Tasks | Tags ---++-+- = outdated_med-packages.txt = The diff for this file was not included because it is too large. = python-team-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Mon, 25 Mar 2024 13:42:12 + +Last-Update: Tue, 26 Mar 2024 01:42:05 + Source | Vote | Tags ++ View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/8f5d77c6c08e0f27952f8283b4c475dc219265fa -- View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/8f5d77c6c08e0f27952f8283b4c475dc219265fa You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/libbpp-seq] Pushed new tag debian/2.4.1-11
Andreas Tille pushed new tag debian/2.4.1-11 at Debian Med / libbpp-seq -- View it on GitLab: https://salsa.debian.org/med-team/libbpp-seq/-/tree/debian/2.4.1-11 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/libbpp-seq][master] 3 commits: Drop hard-coded dependency on libbpp-core4
Andreas Tille pushed to branch master at Debian Med / libbpp-seq
Commits:
15f78ce6 by Andreas Tille at 2024-03-25T11:01:56+01:00
Drop hard-coded dependency on libbpp-core4
- - - - -
2ce29e7c by Andreas Tille at 2024-03-25T11:30:10+01:00
Lintian-overrides for version-substvar-for-external-package
- - - - -
95d3fad4 by Andreas Tille at 2024-03-25T11:33:26+01:00
Upload to unstable
- - - - -
3 changed files:
- debian/changelog
- debian/control
- + debian/source/lintian-overrides
Changes:
=
debian/changelog
=
@@ -1,3 +1,14 @@
+libbpp-seq (2.4.1-11) unstable; urgency=medium
+
+ [ Dann Frazier ]
+ * Drop hard-coded dependency on libbpp-core4
+Closes: #1067586
+
+ [ Andreas Tille ]
+ * Lintian-overrides for version-substvar-for-external-package
+
+ -- Andreas Tille Mon, 25 Mar 2024 11:30:15 +0100
+
libbpp-seq (2.4.1-10.1) unstable; urgency=medium
* Non-maintainer upload.
=
debian/control
=
@@ -39,8 +39,7 @@ Architecture: any
Multi-Arch: same
Section: libs
Depends: ${shlibs:Depends},
- ${misc:Depends},
- libbpp-core4
+ ${misc:Depends}
Pre-Depends: ${misc:Pre-Depends}
Description: Bio++ Sequence library
Bio++ is a set of C++ libraries for Bioinformatics, including sequence
=
debian/source/lintian-overrides
=
@@ -0,0 +1,3 @@
+# This is a false positive since formerly libbpp-seq12 was build by this
+libbpp-seq source: version-substvar-for-external-package Conflicts
${source:Version} libbpp-seq12t64 -> libbpp-seq12 [debian/control:37]
+
View it on GitLab:
https://salsa.debian.org/med-team/libbpp-seq/-/compare/0125f0f6b78e6774305e1404be085d215fcfa8bb...95d3fad4b8d298903d42fd6847e3254db03da6ec
--
View it on GitLab:
https://salsa.debian.org/med-team/libbpp-seq/-/compare/0125f0f6b78e6774305e1404be085d215fcfa8bb...95d3fad4b8d298903d42fd6847e3254db03da6ec
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[med-svn] [Git][med-team/community/helper-scripts][master] automatic update
Andreas Tille pushed to branch master at Debian Med / community / helper-scripts Commits: 4d75cdb0 by Andreas Tille at 2024-03-25T01:43:23+00:00 automatic update - - - - - 4 changed files: - debian-med-tests.txt - debian-science-tests.txt - outdated_med-packages.txt - python-team-tests.txt Changes: = debian-med-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Sun, 24 Mar 2024 13:42:05 + +Last-Update: Mon, 25 Mar 2024 01:42:05 + Source| Vote | Tasks | Tags ---+++-- = debian-science-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Sun, 24 Mar 2024 13:42:09 + +Last-Update: Mon, 25 Mar 2024 01:42:06 + Source | Vote | Tasks | Tags ---++-+- = outdated_med-packages.txt = The diff for this file was not included because it is too large. = python-team-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Sun, 24 Mar 2024 13:42:12 + +Last-Update: Mon, 25 Mar 2024 01:42:06 + Source | Vote | Tags ++ View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/4d75cdb00fe22897ffe3338be3fdb1c2e5d588aa -- View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/4d75cdb00fe22897ffe3338be3fdb1c2e5d588aa You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/community/helper-scripts][master] automatic update
Andreas Tille pushed to branch master at Debian Med / community / helper-scripts Commits: 842f7575 by Andreas Tille at 2024-03-23T01:43:24+00:00 automatic update - - - - - 4 changed files: - debian-med-tests.txt - debian-science-tests.txt - outdated_med-packages.txt - python-team-tests.txt Changes: = debian-med-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Fri, 22 Mar 2024 13:42:05 + +Last-Update: Sat, 23 Mar 2024 01:42:04 + Source| Vote | Tasks | Tags ---+++-- = debian-science-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Fri, 22 Mar 2024 13:42:10 + +Last-Update: Sat, 23 Mar 2024 01:42:04 + Source | Vote | Tasks | Tags ---++-+- = outdated_med-packages.txt = The diff for this file was not included because it is too large. = python-team-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Fri, 22 Mar 2024 13:42:13 + +Last-Update: Sat, 23 Mar 2024 01:42:04 + Source | Vote | Tags ++ View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/842f757570e84d555ac74a873c623c2a4fa92f4b -- View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/842f757570e84d555ac74a873c623c2a4fa92f4b You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/smrtanalysis][master] 5 commits: Add fake watch file
Andreas Tille pushed to branch master at Debian Med / smrtanalysis Commits: 72df0e4d by Andreas Tille at 2022-02-13T14:11:08+01:00 Add fake watch file - - - - - 1d779df4 by Andreas Tille at 2022-02-13T14:15:31+01:00 Rebuild against updated libs - - - - - cd467d4e by Andreas Tille at 2022-02-13T14:15:48+01:00 routine-update: Standards-Version: 4.6.0 - - - - - 01c27bc0 by Andreas Tille at 2022-02-13T14:21:13+01:00 No watch file for native package - - - - - 333ef4ad by Andreas Tille at 2022-02-13T14:22:55+01:00 Upload to unstable - - - - - 2 changed files: - debian/changelog - debian/control Changes: = debian/changelog = @@ -1,3 +1,11 @@ +smrtanalysis (0~20210112) unstable; urgency=medium + + * Rebuild against updated libs +Closes: #1005433 + * Standards-Version: 4.6.0 (routine-update) + + -- Andreas Tille Sun, 13 Feb 2022 14:21:26 +0100 + smrtanalysis (0~20210111) unstable; urgency=medium * Make smrtanalysis-dev Architecture: any and add its dependencies to = debian/control = @@ -9,7 +9,7 @@ Build-Depends: debhelper-compat (= 13), python3-pbconsensuscore, libpbseq-dev, libpbbam-dev -Standards-Version: 4.5.1 +Standards-Version: 4.6.0 Vcs-Browser: https://salsa.debian.org/med-team/smrtanalysis Vcs-Git: https://salsa.debian.org/med-team/smrtanalysis.git Homepage: https://www.pacb.com/products-and-services/analytical-software/smrt-analysis/ View it on GitLab: https://salsa.debian.org/med-team/smrtanalysis/-/compare/67b0db0dd1c6c8860859125f4b1fde7872696dcb...333ef4ad41459b0ca49953487df871d6bf21f79b -- View it on GitLab: https://salsa.debian.org/med-team/smrtanalysis/-/compare/67b0db0dd1c6c8860859125f4b1fde7872696dcb...333ef4ad41459b0ca49953487df871d6bf21f79b You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/smrtanalysis] Pushed new tag debian/0_20210112
Andreas Tille pushed new tag debian/0_20210112 at Debian Med / smrtanalysis -- View it on GitLab: https://salsa.debian.org/med-team/smrtanalysis/-/tree/debian/0_20210112 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/dcmtk][master] [armhf, armel] No need to drop graphviz from build-depends-indep
Andreas Tille pushed to branch master at Debian Med / dcmtk Commits: da72b727 by Emanuele Rocca at 2024-03-22T11:13:49+01:00 [armhf,armel] No need to drop graphviz from build-depends-indep Build-Depends-Indep are only used to build the arch:all packages, and currently all the arch:all autobuilder run on amd64. - - - - - 1 changed file: - debian/control Changes: = debian/control = @@ -17,7 +17,7 @@ Build-Depends: dpkg-dev (>= 1.22.5), cmake, libxml2-dev, zlib1g-dev Build-Depends-Indep: doxygen, - graphviz [!armhf !armel] + graphviz Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/med-team/dcmtk Vcs-Git: https://salsa.debian.org/med-team/dcmtk.git View it on GitLab: https://salsa.debian.org/med-team/dcmtk/-/commit/da72b7276f37c927bc8064f41790948ccc93d372 -- View it on GitLab: https://salsa.debian.org/med-team/dcmtk/-/commit/da72b7276f37c927bc8064f41790948ccc93d372 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/community/helper-scripts][master] automatic update
Andreas Tille pushed to branch master at Debian Med / community / helper-scripts Commits: cc8a8d3e by Andreas Tille at 2024-03-22T01:43:21+00:00 automatic update - - - - - 4 changed files: - debian-med-tests.txt - debian-science-tests.txt - outdated_med-packages.txt - python-team-tests.txt Changes: = debian-med-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Thu, 21 Mar 2024 13:42:04 + +Last-Update: Fri, 22 Mar 2024 01:42:06 + Source| Vote | Tasks | Tags ---+++-- = debian-science-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Thu, 21 Mar 2024 13:42:09 + +Last-Update: Fri, 22 Mar 2024 01:42:06 + Source | Vote | Tasks | Tags ---++-+- = outdated_med-packages.txt = The diff for this file was not included because it is too large. = python-team-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Thu, 21 Mar 2024 13:42:12 + +Last-Update: Fri, 22 Mar 2024 01:42:07 + Source | Vote | Tags ++ View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/cc8a8d3e7f7cf6a71410a1863415516d41a31fb7 -- View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/cc8a8d3e7f7cf6a71410a1863415516d41a31fb7 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/community/helper-scripts][master] automatic update
Andreas Tille pushed to branch master at Debian Med / community / helper-scripts Commits: 52f96699 by Andreas Tille at 2024-03-21T01:43:17+00:00 automatic update - - - - - 4 changed files: - debian-med-tests.txt - debian-science-tests.txt - outdated_med-packages.txt - python-team-tests.txt Changes: = debian-med-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Wed, 20 Mar 2024 13:42:04 + +Last-Update: Thu, 21 Mar 2024 01:42:04 + Source| Vote | Tasks | Tags ---+++-- = debian-science-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Wed, 20 Mar 2024 13:42:09 + +Last-Update: Thu, 21 Mar 2024 01:42:05 + Source | Vote | Tasks | Tags ---++-+- = outdated_med-packages.txt = The diff for this file was not included because it is too large. = python-team-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Wed, 20 Mar 2024 13:42:12 + +Last-Update: Thu, 21 Mar 2024 01:42:05 + Source | Vote | Tags ++ View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/52f966992940219caa1cbfcf91f2b6287a5b623d -- View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/52f966992940219caa1cbfcf91f2b6287a5b623d You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/community/helper-scripts][master] automatic update
Andreas Tille pushed to branch master at Debian Med / community / helper-scripts Commits: f4d48118 by Andreas Tille at 2024-03-20T01:43:20+00:00 automatic update - - - - - 4 changed files: - debian-med-tests.txt - debian-science-tests.txt - outdated_med-packages.txt - python-team-tests.txt Changes: = debian-med-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Tue, 19 Mar 2024 13:42:04 + +Last-Update: Wed, 20 Mar 2024 01:42:07 + Source| Vote | Tasks | Tags ---+++-- = debian-science-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Tue, 19 Mar 2024 13:42:06 + +Last-Update: Wed, 20 Mar 2024 01:42:07 + Source | Vote | Tasks | Tags ---++-+- = outdated_med-packages.txt = The diff for this file was not included because it is too large. = python-team-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Tue, 19 Mar 2024 13:42:07 + +Last-Update: Wed, 20 Mar 2024 01:42:07 + Source | Vote | Tags ++ View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/f4d48118d77ef986e064d27825b14a4c53c45ed7 -- View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/f4d48118d77ef986e064d27825b14a4c53c45ed7 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/community/helper-scripts][master] automatic update
Andreas Tille pushed to branch master at Debian Med / community / helper-scripts Commits: 525a37cb by Andreas Tille at 2024-03-19T01:43:24+00:00 automatic update - - - - - 4 changed files: - debian-med-tests.txt - debian-science-tests.txt - outdated_med-packages.txt - python-team-tests.txt Changes: = debian-med-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Mon, 18 Mar 2024 13:42:05 + +Last-Update: Tue, 19 Mar 2024 01:42:04 + Source| Vote | Tasks | Tags ---+++-- = debian-science-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Mon, 18 Mar 2024 13:42:09 + +Last-Update: Tue, 19 Mar 2024 01:42:04 + Source | Vote | Tasks | Tags ---++-+- = outdated_med-packages.txt = The diff for this file was not included because it is too large. = python-team-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Mon, 18 Mar 2024 13:42:13 + +Last-Update: Tue, 19 Mar 2024 01:42:05 + Source | Vote | Tags ++ View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/525a37cb26ba2c4eef3ab722046dece563f5665d -- View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/525a37cb26ba2c4eef3ab722046dece563f5665d You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/community/helper-scripts][master] automatic update
Andreas Tille pushed to branch master at Debian Med / community / helper-scripts Commits: e3d6d953 by Andreas Tille at 2024-03-18T01:43:22+00:00 automatic update - - - - - 4 changed files: - debian-med-tests.txt - debian-science-tests.txt - outdated_med-packages.txt - python-team-tests.txt Changes: = debian-med-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Sun, 17 Mar 2024 13:42:04 + +Last-Update: Mon, 18 Mar 2024 01:42:05 + Source| Vote | Tasks | Tags ---+++-- = debian-science-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Sun, 17 Mar 2024 13:42:08 + +Last-Update: Mon, 18 Mar 2024 01:42:06 + Source | Vote | Tasks | Tags ---++-+- = outdated_med-packages.txt = The diff for this file was not included because it is too large. = python-team-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Sun, 17 Mar 2024 13:42:12 + +Last-Update: Mon, 18 Mar 2024 01:42:06 + Source | Vote | Tags ++ View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/e3d6d953a447b10ebc418df3eac44d3030c57a0d -- View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/e3d6d953a447b10ebc418df3eac44d3030c57a0d You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/community/helper-scripts][master] automatic update
Andreas Tille pushed to branch master at Debian Med / community / helper-scripts Commits: a164a9c0 by Andreas Tille at 2024-03-16T01:43:21+00:00 automatic update - - - - - 4 changed files: - debian-med-tests.txt - debian-science-tests.txt - outdated_med-packages.txt - python-team-tests.txt Changes: = debian-med-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Fri, 15 Mar 2024 13:42:04 + +Last-Update: Sat, 16 Mar 2024 01:42:05 + Source| Vote | Tasks | Tags ---+++-- = debian-science-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Fri, 15 Mar 2024 13:42:09 + +Last-Update: Sat, 16 Mar 2024 01:42:05 + Source | Vote | Tasks | Tags ---++-+- = outdated_med-packages.txt = The diff for this file was not included because it is too large. = python-team-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Fri, 15 Mar 2024 13:42:12 + +Last-Update: Sat, 16 Mar 2024 01:42:06 + Source | Vote | Tags ++ View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/a164a9c07a59e03177d6b4bd7029a0ef1ce0070f -- View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/a164a9c07a59e03177d6b4bd7029a0ef1ce0070f You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/community/helper-scripts][master] automatic update
Andreas Tille pushed to branch master at Debian Med / community / helper-scripts Commits: 0446f9b2 by Andreas Tille at 2024-03-15T01:43:08+00:00 automatic update - - - - - 4 changed files: - debian-med-tests.txt - debian-science-tests.txt - outdated_med-packages.txt - python-team-tests.txt Changes: = debian-med-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Thu, 14 Mar 2024 13:42:05 + +Last-Update: Fri, 15 Mar 2024 01:42:04 + Source| Vote | Tasks | Tags ---+++-- = debian-science-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Thu, 14 Mar 2024 13:42:06 + +Last-Update: Fri, 15 Mar 2024 01:42:05 + Source | Vote | Tasks | Tags ---++-+- = outdated_med-packages.txt = The diff for this file was not included because it is too large. = python-team-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Thu, 14 Mar 2024 13:42:08 + +Last-Update: Fri, 15 Mar 2024 01:42:05 + Source | Vote | Tags ++ View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/0446f9b2a2c341e17ec01f6f43b01a171496c6f5 -- View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/0446f9b2a2c341e17ec01f6f43b01a171496c6f5 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/community/helper-scripts][master] automatic update
Andreas Tille pushed to branch master at Debian Med / community / helper-scripts Commits: 096dc535 by Andreas Tille at 2024-03-14T01:43:06+00:00 automatic update - - - - - 4 changed files: - debian-med-tests.txt - debian-science-tests.txt - outdated_med-packages.txt - python-team-tests.txt Changes: = debian-med-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Wed, 13 Mar 2024 13:42:04 + +Last-Update: Thu, 14 Mar 2024 01:42:04 + Source| Vote | Tasks | Tags ---+++-- = debian-science-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Wed, 13 Mar 2024 13:42:09 + +Last-Update: Thu, 14 Mar 2024 01:42:04 + Source | Vote | Tasks | Tags ---++-+- = outdated_med-packages.txt = The diff for this file was not included because it is too large. = python-team-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Wed, 13 Mar 2024 13:42:12 + +Last-Update: Thu, 14 Mar 2024 01:42:05 + Source | Vote | Tags ++ View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/096dc535577dad8a4e1fbf1d4924a5fbd8f9cb4f -- View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/096dc535577dad8a4e1fbf1d4924a5fbd8f9cb4f You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/multiqc][master] 7 commits: Remove now unused python3-distutils
Andreas Tille pushed to branch master at Debian Med / multiqc Commits: 549e0a32 by Andreas Tille at 2024-03-13T17:27:46+01:00 Remove now unused python3-distutils - - - - - 01044cdf by Andreas Tille at 2024-03-13T17:28:36+01:00 routine-update: New upstream version - - - - - 68795ade by Andreas Tille at 2024-03-13T19:18:13+01:00 New upstream version 1.21+dfsg - - - - - 6c46de07 by Andreas Tille at 2024-03-13T19:18:23+01:00 Update upstream source from tag upstream/1.21+dfsg Update to upstream version 1.21+dfsg with Debian dir 6403c3f84e76b5f9e404343e81ab0fb93f4ffece - - - - - 0d118574 by Andreas Tille at 2024-03-13T18:20:57+00:00 Set upstream metadata fields: Bug-Database, Bug-Submit, Repository, Repository-Browse. Changes-By: lintian-brush - - - - - 2f080ef3 by Andreas Tille at 2024-03-13T20:02:24+01:00 Update patches - - - - - 1154c8e7 by Andreas Tille at 2024-03-13T20:33:11+01:00 Build-Depends: python3-plotly - - - - - 30 changed files: - .gitmodules - CHANGELOG.md - CITATION.cff - + CODE_OF_CONDUCT.md - CSP.txt - README.md - debian/changelog - debian/control - − debian/patches/no_future_dependency.patch - debian/patches/removeHighcharts.patch - debian/patches/series - debian/upstream/metadata - docs/README.md - docs/config.yaml - docs/core/custom_content/index.md - docs/core/development/compatibility.md - docs/core/development/modules.md - docs/core/development/plots.md - docs/core/development/plugins.md - docs/core/development/templates.md - docs/core/getting_started/config.md - docs/core/getting_started/installation.md - docs/core/getting_started/quick_start.md - docs/core/index.md → docs/core/index.mdx - docs/core/reports/customisation.md - docs/core/reports/reports.md - docs/core/usage/troubleshooting.md - + docs/images/MultiQC_logo_dark.svg - + docs/images/changelog/v1.21-boxplot.png - docs/images/screenshots/fastqc-run.svg The diff was not included because it is too large. View it on GitLab: https://salsa.debian.org/med-team/multiqc/-/compare/0d66fda873c44ef4ffe8bfb24ce540fddbc09b2a...1154c8e78881d266da199452ac057630ffad8482 -- View it on GitLab: https://salsa.debian.org/med-team/multiqc/-/compare/0d66fda873c44ef4ffe8bfb24ce540fddbc09b2a...1154c8e78881d266da199452ac057630ffad8482 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/multiqc] Pushed new tag upstream/1.21+dfsg
Andreas Tille pushed new tag upstream/1.21+dfsg at Debian Med / multiqc -- View it on GitLab: https://salsa.debian.org/med-team/multiqc/-/tree/upstream/1.21+dfsg You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/multiqc][pristine-tar] 2 commits: pristine-tar data for multiqc_1.21+dfsg.orig-debian-tests-data.tar.xz
Andreas Tille pushed to branch pristine-tar at Debian Med / multiqc Commits: fe7b592b by Andreas Tille at 2024-03-13T19:18:21+01:00 pristine-tar data for multiqc_1.21+dfsg.orig-debian-tests-data.tar.xz - - - - - 0221acca by Andreas Tille at 2024-03-13T19:18:23+01:00 pristine-tar data for multiqc_1.21+dfsg.orig.tar.xz - - - - - 4 changed files: - + multiqc_1.21+dfsg.orig-debian-tests-data.tar.xz.delta - + multiqc_1.21+dfsg.orig-debian-tests-data.tar.xz.id - + multiqc_1.21+dfsg.orig.tar.xz.delta - + multiqc_1.21+dfsg.orig.tar.xz.id Changes: = multiqc_1.21+dfsg.orig-debian-tests-data.tar.xz.delta = Binary files /dev/null and b/multiqc_1.21+dfsg.orig-debian-tests-data.tar.xz.delta differ = multiqc_1.21+dfsg.orig-debian-tests-data.tar.xz.id = @@ -0,0 +1 @@ +24b91a022c090fa6f62f700a174d35af0ecbd1ce = multiqc_1.21+dfsg.orig.tar.xz.delta = Binary files /dev/null and b/multiqc_1.21+dfsg.orig.tar.xz.delta differ = multiqc_1.21+dfsg.orig.tar.xz.id = @@ -0,0 +1 @@ +79a7264df48b3facb2341c3b34d665b21baac908 View it on GitLab: https://salsa.debian.org/med-team/multiqc/-/compare/71e2b523202c979c2670401bbeb1789ad2f0e97e...0221acca878a88edf090cadb3f6394afa520f3f8 -- View it on GitLab: https://salsa.debian.org/med-team/multiqc/-/compare/71e2b523202c979c2670401bbeb1789ad2f0e97e...0221acca878a88edf090cadb3f6394afa520f3f8 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/multiqc][upstream] New upstream version 1.21+dfsg
Andreas Tille pushed to branch upstream at Debian Med / multiqc Commits: 68795ade by Andreas Tille at 2024-03-13T19:18:13+01:00 New upstream version 1.21+dfsg - - - - - 30 changed files: - .gitmodules - CHANGELOG.md - CITATION.cff - + CODE_OF_CONDUCT.md - CSP.txt - README.md - docs/README.md - docs/config.yaml - docs/core/custom_content/index.md - docs/core/development/compatibility.md - docs/core/development/modules.md - docs/core/development/plots.md - docs/core/development/plugins.md - docs/core/development/templates.md - docs/core/getting_started/config.md - docs/core/getting_started/installation.md - docs/core/getting_started/quick_start.md - docs/core/index.md → docs/core/index.mdx - docs/core/reports/customisation.md - docs/core/reports/reports.md - docs/core/usage/troubleshooting.md - + docs/images/MultiQC_logo_dark.svg - + docs/images/changelog/v1.21-boxplot.png - docs/images/screenshots/fastqc-run.svg - + docs/modules/bamdst.md - docs/modules/cutadapt.md - docs/modules/fastp.md - docs/modules/hisat2.md - docs/modules/homer.md - + docs/modules/isoseq.md The diff was not included because it is too large. View it on GitLab: https://salsa.debian.org/med-team/multiqc/-/commit/68795ade3bc80e064e45930ec0d810d531a5ccd2 -- View it on GitLab: https://salsa.debian.org/med-team/multiqc/-/commit/68795ade3bc80e064e45930ec0d810d531a5ccd2 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/community/helper-scripts][master] automatic update
Andreas Tille pushed to branch master at Debian Med / community / helper-scripts Commits: c23961e0 by Andreas Tille at 2024-03-13T01:43:14+00:00 automatic update - - - - - 4 changed files: - debian-med-tests.txt - debian-science-tests.txt - outdated_med-packages.txt - python-team-tests.txt Changes: = debian-med-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Tue, 12 Mar 2024 13:42:04 + +Last-Update: Wed, 13 Mar 2024 01:42:06 + Source| Vote | Tasks | Tags ---+++-- = debian-science-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Tue, 12 Mar 2024 13:42:08 + +Last-Update: Wed, 13 Mar 2024 01:42:06 + Source | Vote | Tasks | Tags ---++-+- = outdated_med-packages.txt = The diff for this file was not included because it is too large. = python-team-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Tue, 12 Mar 2024 13:42:11 + +Last-Update: Wed, 13 Mar 2024 01:42:07 + Source | Vote | Tags ++ View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/c23961e0a9d851613e839ae1b09ee7decd028a97 -- View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/c23961e0a9d851613e839ae1b09ee7decd028a97 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/q2cli][master] Make the build reproducible
Andreas Tille pushed to branch master at Debian Med / q2cli Commits: 8348f31b by Andreas Tille at 2024-03-12T14:08:08+01:00 Make the build reproducible - - - - - 2 changed files: - debian/changelog - debian/rules Changes: = debian/changelog = @@ -1,3 +1,11 @@ +q2cli (2024.2.0-2) UNRELEASED; urgency=medium + + * Team upload. + * Make the build reproducible +Closes: #1066085 + + -- Andreas Tille Tue, 12 Mar 2024 14:07:10 +0100 + q2cli (2024.2.0-1) unstable; urgency=medium * Team upload. = debian/rules = @@ -21,6 +21,7 @@ override_dh_install: mkdir -p debian/$(DEB_SOURCE)/usr/share/bash-completion/completions mv debian/$(DEB_SOURCE)/usr/bin/tab-qiime debian/$(DEB_SOURCE)/usr/share/bash-completion/completions/qiime chmod -x debian/$(DEB_SOURCE)/usr/share/bash-completion/completions/qiime + find debian/$(DEB_SOURCE) -type f -name parsl.log -delete debian/control: debian/control.in echo "# This file is autogenerated from control.in to update versioned dependencies" > $@ View it on GitLab: https://salsa.debian.org/med-team/q2cli/-/commit/8348f31baa1c29441410c270987ef332de609eba -- View it on GitLab: https://salsa.debian.org/med-team/q2cli/-/commit/8348f31baa1c29441410c270987ef332de609eba You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/community/helper-scripts][master] automatic update
Andreas Tille pushed to branch master at Debian Med / community / helper-scripts Commits: fcc54535 by Andreas Tille at 2024-03-12T01:43:19+00:00 automatic update - - - - - 4 changed files: - debian-med-tests.txt - debian-science-tests.txt - outdated_med-packages.txt - python-team-tests.txt Changes: = debian-med-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Mon, 11 Mar 2024 13:42:09 + +Last-Update: Tue, 12 Mar 2024 01:42:04 + Source| Vote | Tasks | Tags ---+++-- = debian-science-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Mon, 11 Mar 2024 13:42:13 + +Last-Update: Tue, 12 Mar 2024 01:42:04 + Source | Vote | Tasks | Tags ---++-+- = outdated_med-packages.txt = The diff for this file was not included because it is too large. = python-team-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Mon, 11 Mar 2024 13:42:17 + +Last-Update: Tue, 12 Mar 2024 01:42:05 + Source | Vote | Tags ++ View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/fcc54535f0503dca16eebb6acca64962a8354445 -- View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/fcc54535f0503dca16eebb6acca64962a8354445 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/community/helper-scripts][master] automatic update
Andreas Tille pushed to branch master at Debian Med / community / helper-scripts Commits: 2b1ae2eb by Andreas Tille at 2024-03-11T01:43:21+00:00 automatic update - - - - - 4 changed files: - debian-med-tests.txt - debian-science-tests.txt - outdated_med-packages.txt - python-team-tests.txt Changes: = debian-med-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Sun, 10 Mar 2024 13:42:04 + +Last-Update: Mon, 11 Mar 2024 01:42:05 + Source| Vote | Tasks | Tags ---+++-- = debian-science-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Sun, 10 Mar 2024 13:42:08 + +Last-Update: Mon, 11 Mar 2024 01:42:05 + Source | Vote | Tasks | Tags ---++-+- = outdated_med-packages.txt = The diff for this file was not included because it is too large. = python-team-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Sun, 10 Mar 2024 13:42:11 + +Last-Update: Mon, 11 Mar 2024 01:42:06 + Source | Vote | Tags ++ View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/2b1ae2ebeec77a856b24434a5017603c326839ed -- View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/2b1ae2ebeec77a856b24434a5017603c326839ed You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/embassy-domsearch] Pushed new tag debian/0.1.660-4
Andreas Tille pushed new tag debian/0.1.660-4 at Debian Med / embassy-domsearch -- View it on GitLab: https://salsa.debian.org/med-team/embassy-domsearch/-/tree/debian/0.1.660-4 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/embassy-domsearch][master] 8 commits: Build-Depends: architecture-is-64-bit (to address ROM bug for 32 bit architectures #1062371)
Andreas Tille pushed to branch master at Debian Med / embassy-domsearch
Commits:
0369304e by Andreas Tille at 2024-03-09T22:42:40+01:00
Build-Depends: architecture-is-64-bit (to address ROM bug for 32 bit
architectures #1062371)
- - - - -
6714fb93 by Andreas Tille at 2024-03-09T22:43:52+01:00
Drop unused versioned Build-Depends: emboss-lib ( 6.6.1~)
- - - - -
395c9e15 by Andreas Tille at 2024-03-09T22:44:34+01:00
routine-update: Standards-Version: 4.6.2
- - - - -
d23faf7c by Andreas Tille at 2024-03-09T22:44:34+01:00
routine-update: debhelper-compat 13
- - - - -
01d6bc77 by Andreas Tille at 2024-03-09T22:44:39+01:00
routine-update: Rules-Requires-Root: no
- - - - -
dfe4ef78 by Andreas Tille at 2024-03-09T21:44:40+00:00
Use secure URI in Homepage field.
Changes-By: lintian-brush
Fixes: lintian: homepage-field-uses-insecure-uri
See-also: https://lintian.debian.org/tags/homepage-field-uses-insecure-uri.html
- - - - -
2ff6d868 by Andreas Tille at 2024-03-09T22:50:04+01:00
* Update lintian-overrides
* Lintian-overrides (see lintian bug #1017966)
- - - - -
5011394e by Andreas Tille at 2024-03-09T22:50:48+01:00
Upload to unstable
- - - - -
5 changed files:
- debian/changelog
- − debian/compat
- debian/control
- debian/lintian-overrides
- + debian/source/lintian-overrides
Changes:
=
debian/changelog
=
@@ -1,3 +1,17 @@
+embassy-domsearch (1:0.1.660-4) unstable; urgency=medium
+
+ * Build-Depends: architecture-is-64-bit (to address ROM bug for 32 bit
+architectures #1062371)
+ * Drop unused versioned Build-Depends: emboss-lib (<< 6.6.1~)
+ * Standards-Version: 4.6.2 (routine-update)
+ * debhelper-compat 13 (routine-update)
+ * Rules-Requires-Root: no (routine-update)
+ * Use secure URI in Homepage field.
+ * Update lintian-overrides
+ * Lintian-overrides (see lintian bug #1017966)
+
+ -- Andreas Tille Sat, 09 Mar 2024 22:50:13 +0100
+
embassy-domsearch (1:0.1.660-3) unstable; urgency=medium
[ Jelmer Vernooij ]
=
debian/compat deleted
=
@@ -1 +0,0 @@
-11
=
debian/control
=
@@ -4,23 +4,24 @@ Uploaders: Charles Plessy ,
Andreas Tille
Section: science
Priority: optional
-Build-Depends: debhelper (>= 11~),
- emboss-lib (>= 6.6.0-1~),
- emboss-lib (<< 6.6.1~),
+Build-Depends: debhelper-compat (= 13),
+ architecture-is-64-bit,
+ emboss-lib,
libx11-dev,
libgd-dev,
default-libmysqlclient-dev,
libpq-dev
-Standards-Version: 4.3.0
+Standards-Version: 4.6.2
Vcs-Browser: https://salsa.debian.org/med-team/embassy-domsearch
Vcs-Git: https://salsa.debian.org/med-team/embassy-domsearch.git
-Homepage: http://emboss.sourceforge.net/apps/cvs/embassy/index.html#DOMSEARCH
+Homepage: https://emboss.sourceforge.net/apps/cvs/embassy/index.html#DOMSEARCH
+Rules-Requires-Root: no
Package: embassy-domsearch
Architecture: any
Depends: ${shlibs:Depends},
${misc:Depends},
- emboss-lib (>= 6.6.0-1~),
+ emboss-lib,
emboss-lib (<< 6.6.1~)
Recommends: emboss
Suggests: embassy
=
debian/lintian-overrides
=
@@ -1,2 +1,6 @@
# the defined rpath is needed to find emboss libs and make dpkg-shlibdeps
successful
-embassy-domsearch: binary-or-shlib-defines-rpath usr/bin/* /usr/lib/emboss/lib
+embassy-domsearch: custom-library-search-path RUNPATH /usr/lib/emboss/lib
[usr/bin/seqfraggle]
+embassy-domsearch: custom-library-search-path RUNPATH /usr/lib/emboss/lib
[usr/bin/seqnr]
+embassy-domsearch: custom-library-search-path RUNPATH /usr/lib/emboss/lib
[usr/bin/seqsearch]
+embassy-domsearch: custom-library-search-path RUNPATH /usr/lib/emboss/lib
[usr/bin/seqsort]
+embassy-domsearch: custom-library-search-path RUNPATH /usr/lib/emboss/lib
[usr/bin/seqwords]
=
debian/source/lintian-overrides
=
@@ -0,0 +1,5 @@
+# See lintian bug #1017966
+embassy-domsearch source: source-is-missing [emboss_doc/html/seqnr.html]
+embassy-domsearch source: source-is-missing [emboss_doc/html/seqsearch.html]
+embassy-domsearch source: source-is-missing [emboss_doc/html/seqsort.html]
+embassy-domsearch source: source-is-missing [emboss_doc/html/seqwords.html]
View it on GitLab:
https://salsa.debian.org/med-team/embassy-domsearch/-/compare/24d1fe6f9c22babbb6aba343c5eaa480ab077e59...5011394e178777164aa9cb21b3cf62e1c70acb30
--
View it on GitLab:
https://salsa.debian.org/med-team/embassy-domsearch/-/compare/24d1fe6f9c22babbb6aba343c5eaa480ab077e59...5011394e178777164aa9cb21b3cf62e1c70acb30
You're receiving this email because of your
[med-svn] [Git][med-team/embassy-domalign][master] 8 commits: Build-Depends: architecture-is-64-bit (to address ROM bug for 32 bit architectures #1062371)
Andreas Tille pushed to branch master at Debian Med / embassy-domalign Commits: ebaa78bf by Andreas Tille at 2024-03-09T22:26:52+01:00 Build-Depends: architecture-is-64-bit (to address ROM bug for 32 bit architectures #1062371) - - - - - f1a39d11 by Andreas Tille at 2024-03-09T22:27:27+01:00 Drop unused versioned Build-Depends: emboss-lib ( 6.6.1~) - - - - - b2ef9869 by Andreas Tille at 2024-03-09T22:28:09+01:00 routine-update: Standards-Version: 4.6.2 - - - - - ae62c0e8 by Andreas Tille at 2024-03-09T21:28:16+00:00 Use secure URI in Homepage field. Changes-By: lintian-brush Fixes: lintian: homepage-field-uses-insecure-uri See-also: https://lintian.debian.org/tags/homepage-field-uses-insecure-uri.html - - - - - d1cee0dc by Andreas Tille at 2024-03-09T22:31:25+01:00 Update lintian-overrides - - - - - d230d26e by Andreas Tille at 2024-03-09T22:32:38+01:00 Lintian-overrides (see lintian bug #1017966) - - - - - a80e69d8 by Andreas Tille at 2024-03-09T22:35:20+01:00 Really fix lintian - - - - - 21db923c by Andreas Tille at 2024-03-09T22:36:07+01:00 Upload to unstable - - - - - 4 changed files: - debian/changelog - debian/control - debian/lintian-overrides - + debian/source/lintian-overrides Changes: = debian/changelog = @@ -1,3 +1,15 @@ +embassy-domalign (0.1.660-5) unstable; urgency=medium + + * Build-Depends: architecture-is-64-bit (to address ROM bug for 32 bit +architectures #1062371) + * Drop unused versioned Build-Depends: emboss-lib (<< 6.6.1~) + * Standards-Version: 4.6.2 (routine-update) + * Use secure URI in Homepage field. + * Update lintian-overrides + * Lintian-overrides (see lintian bug #1017966) + + -- Andreas Tille Sat, 09 Mar 2024 22:32:46 +0100 + embassy-domalign (0.1.660-4) unstable; urgency=medium [ Jelmer Vernooij ] = debian/control = @@ -5,16 +5,16 @@ Uploaders: Charles Plessy , Section: science Priority: optional Build-Depends: debhelper-compat (= 13), + architecture-is-64-bit, emboss-lib, - emboss-lib (<< 6.6.1~), libx11-dev, libgd-dev, default-libmysqlclient-dev, libpq-dev -Standards-Version: 4.5.1 +Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/med-team/embassy-domalign Vcs-Git: https://salsa.debian.org/med-team/embassy-domalign.git -Homepage: http://emboss.sourceforge.net/apps/cvs/embassy/index.html#DOMALIGN +Homepage: https://emboss.sourceforge.net/apps/cvs/embassy/index.html#DOMALIGN Rules-Requires-Root: no Package: embassy-domalign = debian/lintian-overrides = @@ -1,2 +1,5 @@ # the defined rpath is needed to find emboss libs and make dpkg-shlibdeps successful -embassy-domalign: binary-or-shlib-defines-rpath usr/bin/* /usr/lib/emboss/lib +embassy-domalign: custom-library-search-path RUNPATH /usr/lib/emboss/lib [usr/bin/allversusall] +embassy-domalign: custom-library-search-path RUNPATH /usr/lib/emboss/lib [usr/bin/domainalign] +embassy-domalign: custom-library-search-path RUNPATH /usr/lib/emboss/lib [usr/bin/domainrep] +embassy-domalign: custom-library-search-path RUNPATH /usr/lib/emboss/lib [usr/bin/seqalign] = debian/source/lintian-overrides = @@ -0,0 +1,2 @@ +# See lintian bug #1017966 +embassy-domalign source: source-is-missing View it on GitLab: https://salsa.debian.org/med-team/embassy-domalign/-/compare/e1b199cb8b4f9c0711ae085ab4e212e9b67acb4b...21db923c35814fee9e69e64938b64746aae41962 -- View it on GitLab: https://salsa.debian.org/med-team/embassy-domalign/-/compare/e1b199cb8b4f9c0711ae085ab4e212e9b67acb4b...21db923c35814fee9e69e64938b64746aae41962 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/embassy-domalign] Pushed new tag debian/0.1.660-5
Andreas Tille pushed new tag debian/0.1.660-5 at Debian Med / embassy-domalign -- View it on GitLab: https://salsa.debian.org/med-team/embassy-domalign/-/tree/debian/0.1.660-5 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/embassy-domainatrix] Pushed new tag debian/0.1.660-5
Andreas Tille pushed new tag debian/0.1.660-5 at Debian Med / embassy-domainatrix -- View it on GitLab: https://salsa.debian.org/med-team/embassy-domainatrix/-/tree/debian/0.1.660-5 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/embassy-domainatrix][master] 6 commits: Build-Depends: architecture-is-64-bit (to address ROM bug for 32 bit architectures #1062371)
Andreas Tille pushed to branch master at Debian Med / embassy-domainatrix Commits: 7c2a4c16 by Andreas Tille at 2024-03-09T22:14:48+01:00 Build-Depends: architecture-is-64-bit (to address ROM bug for 32 bit architectures #1062371) - - - - - 2c31b21f by Andreas Tille at 2024-03-09T22:15:40+01:00 Drop unused versioned Build-Depends: emboss-lib ( 6.6.1~) - - - - - 3078d3b3 by Andreas Tille at 2024-03-09T22:17:02+01:00 routine-update: Standards-Version: 4.6.2 - - - - - 2699da57 by Andreas Tille at 2024-03-09T21:17:10+00:00 Use secure URI in Homepage field. Changes-By: lintian-brush Fixes: lintian: homepage-field-uses-insecure-uri See-also: https://lintian.debian.org/tags/homepage-field-uses-insecure-uri.html - - - - - e2c88215 by Andreas Tille at 2024-03-09T22:20:47+01:00 Lintian-overrides (see lintian bug #1017966) - - - - - b61ce364 by Andreas Tille at 2024-03-09T22:22:58+01:00 Upload to unstable - - - - - 3 changed files: - debian/changelog - debian/control - + debian/source/lintian-overrides Changes: = debian/changelog = @@ -1,3 +1,14 @@ +embassy-domainatrix (0.1.660-5) unstable; urgency=medium + + * Build-Depends: architecture-is-64-bit (to address ROM bug for 32 bit +architectures #1062371) + * Drop unused versioned Build-Depends: emboss-lib (<< 6.6.1~) + * Standards-Version: 4.6.2 (routine-update) + * Use secure URI in Homepage field. + * Lintian-overrides (see lintian bug #1017966) + + -- Andreas Tille Sat, 09 Mar 2024 22:22:23 +0100 + embassy-domainatrix (0.1.660-4) unstable; urgency=medium * Standards-Version: 4.5.1 (routine-update) = debian/control = @@ -5,16 +5,16 @@ Uploaders: Charles Plessy , Section: science Priority: optional Build-Depends: debhelper-compat (= 13), + architecture-is-64-bit, emboss-lib, - emboss-lib (<< 6.6.1~), libx11-dev, libgd-dev, default-libmysqlclient-dev, libpq-dev -Standards-Version: 4.5.1 +Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/med-team/embassy-domainatrix Vcs-Git: https://salsa.debian.org/med-team/embassy-domainatrix.git -Homepage: http://emboss.sourceforge.net/apps/cvs/embassy/index.html#DOMAINATRIX +Homepage: https://emboss.sourceforge.net/apps/cvs/embassy/index.html#DOMAINATRIX Rules-Requires-Root: no Package: embassy-domainatrix = debian/source/lintian-overrides = @@ -0,0 +1,3 @@ +# See lintian bug #1017966 +embassy-domainatrix source: source-is-missing [emboss_doc/html/domainnr.html] +embassy-domainatrix source: source-is-missing [emboss_doc/html/domainsse.html] View it on GitLab: https://salsa.debian.org/med-team/embassy-domainatrix/-/compare/136527c9b7b4ac61c4f249feed2d849a3511cbcc...b61ce364d1916e669f56ffc2be45ec1fc76d1ea6 -- View it on GitLab: https://salsa.debian.org/med-team/embassy-domainatrix/-/compare/136527c9b7b4ac61c4f249feed2d849a3511cbcc...b61ce364d1916e669f56ffc2be45ec1fc76d1ea6 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/community/helper-scripts][master] automatic update
Andreas Tille pushed to branch master at Debian Med / community / helper-scripts Commits: a9bb6b1d by Andreas Tille at 2024-03-09T01:43:21+00:00 automatic update - - - - - 4 changed files: - debian-med-tests.txt - debian-science-tests.txt - outdated_med-packages.txt - python-team-tests.txt Changes: = debian-med-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Fri, 08 Mar 2024 13:42:05 + +Last-Update: Sat, 09 Mar 2024 01:42:06 + Source| Vote | Tasks | Tags ---+++-- = debian-science-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Fri, 08 Mar 2024 13:42:09 + +Last-Update: Sat, 09 Mar 2024 01:42:06 + Source | Vote | Tasks | Tags ---++-+- = outdated_med-packages.txt = The diff for this file was not included because it is too large. = python-team-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Fri, 08 Mar 2024 13:42:12 + +Last-Update: Sat, 09 Mar 2024 01:42:06 + Source | Vote | Tags ++ View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/a9bb6b1d53b3621abdf8a9efc5760787509cf40b -- View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/a9bb6b1d53b3621abdf8a9efc5760787509cf40b You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/igv] Deleted branch 2.17.3
Andreas Tille deleted branch 2.17.3 at Debian Med / igv -- You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/igv][master] 8 commits: routine-update: New upstream version
Andreas Tille pushed to branch master at Debian Med / igv Commits: 9ef090ca by Andreas Tille at 2024-03-08T08:46:41+01:00 routine-update: New upstream version - - - - - 5df86c7d by Andreas Tille at 2024-03-08T08:46:43+01:00 New upstream version 2.17.3+dfsg - - - - - d2b4336c by Andreas Tille at 2024-03-08T08:47:12+01:00 Update upstream source from tag upstream/2.17.3+dfsg Update to upstream version 2.17.3+dfsg with Debian dir 434aa73bc01caacb09c9d497cb8bc3ccab69373d - - - - - 57896610 by Andreas Tille at 2024-03-08T08:52:13+01:00 Refresh patches - - - - - dc9e4d07 by Andreas Tille at 2024-03-08T08:56:54+01:00 Fix download file name - - - - - 53d08239 by Pierre Gruet at 2024-03-08T17:29:31+01:00 Fixing double @Ignore annotations in the tests - - - - - 1e66afe6 by Andreas Tille at 2024-03-08T18:54:59+01:00 Merge branch 2.17.3 - - - - - 27e1c8c6 by Andreas Tille at 2024-03-08T18:59:10+01:00 Upload to unstable - - - - - 30 changed files: - README.md - debian/changelog - debian/patches/omit_aws_stuff.patch - debian/patches/skip_tests_network.patch - debian/patches/using_home_made_icons.patch - scripts/igv.command - scripts/igv.sh - src/main/java/org/broad/igv/feature/genome/ChromAliasBB.java - src/main/java/org/broad/igv/feature/genome/CytobandMap.java - src/main/java/org/broad/igv/feature/genome/CytobandSource.java - src/main/java/org/broad/igv/feature/genome/CytobandSourceBB.java - src/main/java/org/broad/igv/feature/genome/Genome.java - src/main/java/org/broad/igv/prefs/PreferencesManager.java - src/main/java/org/broad/igv/sam/AlignmentRenderer.java - src/main/java/org/broad/igv/sam/AlignmentTrackMenu.java - src/main/java/org/broad/igv/sam/SAMAlignment.java - src/main/java/org/broad/igv/sam/SupplementaryAlignment.java - src/main/java/org/broad/igv/sam/mods/BaseModificationUtils.java - src/main/java/org/broad/igv/sashimi/SashimiContentPane.java - src/main/java/org/broad/igv/sashimi/SashimiPlot.java - src/main/java/org/broad/igv/track/TrackLoader.java - src/main/java/org/broad/igv/ucsc/bb/BBDataSource.java - src/main/java/org/broad/igv/ucsc/bb/BBFeatureSource.java - src/main/java/org/broad/igv/ucsc/bb/BBFile.java - src/main/java/org/broad/igv/ui/IGVMenuBar.java - src/main/java/org/broad/igv/ui/action/LoadFromURLMenuAction.java - + src/main/java/org/broad/igv/ui/action/UCSCGenArkAction.java - src/main/java/org/broad/igv/ui/commandbar/ChromosomeComboBox.java - src/main/java/org/broad/igv/ui/commandbar/IGVCommandBar.java - src/main/java/org/broad/igv/ui/panel/ReferenceFrame.java The diff was not included because it is too large. View it on GitLab: https://salsa.debian.org/med-team/igv/-/compare/4937a59580e495f657c1292b620b7f4a131bde18...27e1c8c6a1616977006883426aacc730352d127e -- View it on GitLab: https://salsa.debian.org/med-team/igv/-/compare/4937a59580e495f657c1292b620b7f4a131bde18...27e1c8c6a1616977006883426aacc730352d127e You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/igv] Pushed new tag debian/2.17.3+dfsg-1
Andreas Tille pushed new tag debian/2.17.3+dfsg-1 at Debian Med / igv -- View it on GitLab: https://salsa.debian.org/med-team/igv/-/tree/debian/2.17.3+dfsg-1 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/igv] Pushed new tag upstream/2.17.3+dfsg
Andreas Tille pushed new tag upstream/2.17.3+dfsg at Debian Med / igv -- View it on GitLab: https://salsa.debian.org/med-team/igv/-/tree/upstream/2.17.3+dfsg You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/igv][pristine-tar] pristine-tar data for igv_2.17.3+dfsg.orig.tar.xz
Andreas Tille pushed to branch pristine-tar at Debian Med / igv Commits: 45d43448 by Andreas Tille at 2024-03-08T08:47:12+01:00 pristine-tar data for igv_2.17.3+dfsg.orig.tar.xz - - - - - 2 changed files: - + igv_2.17.3+dfsg.orig.tar.xz.delta - + igv_2.17.3+dfsg.orig.tar.xz.id Changes: = igv_2.17.3+dfsg.orig.tar.xz.delta = Binary files /dev/null and b/igv_2.17.3+dfsg.orig.tar.xz.delta differ = igv_2.17.3+dfsg.orig.tar.xz.id = @@ -0,0 +1 @@ +90f1c7d0ad4b384b21fe7df80cf9ae0936a1e13e View it on GitLab: https://salsa.debian.org/med-team/igv/-/commit/45d43448d16019047692c9b2f03ebd8c6515cbca -- View it on GitLab: https://salsa.debian.org/med-team/igv/-/commit/45d43448d16019047692c9b2f03ebd8c6515cbca You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/igv][upstream] New upstream version 2.17.3+dfsg
Andreas Tille pushed to branch upstream at Debian Med / igv Commits: 5df86c7d by Andreas Tille at 2024-03-08T08:46:43+01:00 New upstream version 2.17.3+dfsg - - - - - 30 changed files: - README.md - scripts/igv.command - scripts/igv.sh - src/main/java/org/broad/igv/feature/genome/ChromAliasBB.java - src/main/java/org/broad/igv/feature/genome/CytobandMap.java - src/main/java/org/broad/igv/feature/genome/CytobandSource.java - src/main/java/org/broad/igv/feature/genome/CytobandSourceBB.java - src/main/java/org/broad/igv/feature/genome/Genome.java - src/main/java/org/broad/igv/prefs/PreferencesManager.java - src/main/java/org/broad/igv/sam/AlignmentRenderer.java - src/main/java/org/broad/igv/sam/AlignmentTrackMenu.java - src/main/java/org/broad/igv/sam/SAMAlignment.java - src/main/java/org/broad/igv/sam/SupplementaryAlignment.java - src/main/java/org/broad/igv/sam/mods/BaseModificationUtils.java - src/main/java/org/broad/igv/sashimi/SashimiContentPane.java - src/main/java/org/broad/igv/sashimi/SashimiPlot.java - src/main/java/org/broad/igv/track/TrackLoader.java - src/main/java/org/broad/igv/ucsc/bb/BBDataSource.java - src/main/java/org/broad/igv/ucsc/bb/BBFeatureSource.java - src/main/java/org/broad/igv/ucsc/bb/BBFile.java - src/main/java/org/broad/igv/ui/IGVMenuBar.java - src/main/java/org/broad/igv/ui/action/LoadFromURLMenuAction.java - + src/main/java/org/broad/igv/ui/action/UCSCGenArkAction.java - src/main/java/org/broad/igv/ui/commandbar/ChromosomeComboBox.java - src/main/java/org/broad/igv/ui/commandbar/IGVCommandBar.java - src/main/java/org/broad/igv/ui/panel/ReferenceFrame.java - + src/main/java/org/broad/igv/ui/table/SearchableTableDialog.java - + src/main/java/org/broad/igv/ui/table/SearchableTableModel.java - + src/main/java/org/broad/igv/ui/table/SearchableTableRecord.java - src/main/java/org/broad/igv/ui/util/SnapshotUtilities.java The diff was not included because it is too large. View it on GitLab: https://salsa.debian.org/med-team/igv/-/commit/5df86c7d789d5c89379aa2b9fbbfcde129d261f6 -- View it on GitLab: https://salsa.debian.org/med-team/igv/-/commit/5df86c7d789d5c89379aa2b9fbbfcde129d261f6 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/igv][master] 2 commits: Update DEP3
Andreas Tille pushed to branch master at Debian Med / igv Commits: e78da159 by Andreas Tille at 2024-03-08T08:45:12+01:00 Update DEP3 - - - - - 4937a595 by Andreas Tille at 2024-03-08T15:37:39+01:00 Fix download file name - - - - - 3 changed files: - debian/changelog - debian/patches/skip_tests_network.patch - debian/watch Changes: = debian/changelog = @@ -1,9 +1,13 @@ igv (2.17.1+dfsg-2) UNRELEASED; urgency=medium + [ Vladimir Petko ] * d/p/skip_tests_network.patch: add tests requiring internet (Closes: #1065646). - -- Vladimir Petko Fri, 08 Mar 2024 19:32:23 +1300 + [ Andreas Tille ] + * d/watch: Fix download file name + + -- Andreas Tille Fri, 08 Mar 2024 15:36:47 +0100 igv (2.17.1+dfsg-1) unstable; urgency=medium = debian/patches/skip_tests_network.patch = @@ -1,9 +1,11 @@ Description: ignoring build-time tests that require network access Also excluding all test classes extending AbstractHeadlessTest, as this class systematically looks for data on the Internet. -Author: Pierre Gruet +Author: Pierre Gruet , +Vladimir Petko Forwarded: not-needed -Last-Update: 2021-12-21 +Last-Update: Fri, 8 Mar 2024 19:51:44 +1300 +Bug-Debian: https://bugs.debian.org/1065646 --- a/src/test/java/org/broad/igv/feature/genome/GenomeTest.java +++ b/src/test/java/org/broad/igv/feature/genome/GenomeTest.java = debian/watch = @@ -1,3 +1,3 @@ version=4 -opts="repacksuffix=+dfsg,dversionmangle=s/\+dfsg[0-9]*//g,repack,compression=xz" \ +opts="repacksuffix=+dfsg,dversionmangle=auto,filenamemangle=s%(?:.*?)?v?(\d[\d.]*)\.tar\.gz%@PACKAGE@-$1.tar.gz%" \ https://github.com/broadinstitute/IGV/tags (?:.*?/)?v?(\d[\d.]*)\.tar\.gz View it on GitLab: https://salsa.debian.org/med-team/igv/-/compare/42b0712d9f6bc467f424823e909b11ddb805fd8e...4937a59580e495f657c1292b620b7f4a131bde18 -- View it on GitLab: https://salsa.debian.org/med-team/igv/-/compare/42b0712d9f6bc467f424823e909b11ddb805fd8e...4937a59580e495f657c1292b620b7f4a131bde18 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/igv] Pushed new branch 2.17.3
Andreas Tille pushed new branch 2.17.3 at Debian Med / igv -- View it on GitLab: https://salsa.debian.org/med-team/igv/-/tree/2.17.3 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/community/helper-scripts][master] automatic update
Andreas Tille pushed to branch master at Debian Med / community / helper-scripts Commits: 34a675e3 by Andreas Tille at 2024-03-08T01:43:19+00:00 automatic update - - - - - 4 changed files: - debian-med-tests.txt - debian-science-tests.txt - outdated_med-packages.txt - python-team-tests.txt Changes: = debian-med-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Thu, 07 Mar 2024 13:42:05 + +Last-Update: Fri, 08 Mar 2024 01:42:05 + Source| Vote | Tasks | Tags ---+++-- = debian-science-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Thu, 07 Mar 2024 13:42:09 + +Last-Update: Fri, 08 Mar 2024 01:42:05 + Source | Vote | Tasks | Tags ---++-+- = outdated_med-packages.txt = The diff for this file was not included because it is too large. = python-team-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Thu, 07 Mar 2024 13:42:13 + +Last-Update: Fri, 08 Mar 2024 01:42:05 + Source | Vote | Tags ++ View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/34a675e38fc963baa289fe24221fd8caa16e8ff4 -- View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/34a675e38fc963baa289fe24221fd8caa16e8ff4 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/community/helper-scripts][master] automatic update
Andreas Tille pushed to branch master at Debian Med / community / helper-scripts Commits: de3174f9 by Andreas Tille at 2024-03-07T01:43:17+00:00 automatic update - - - - - 4 changed files: - debian-med-tests.txt - debian-science-tests.txt - outdated_med-packages.txt - python-team-tests.txt Changes: = debian-med-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Wed, 06 Mar 2024 13:42:04 + +Last-Update: Thu, 07 Mar 2024 01:42:07 + Source| Vote | Tasks | Tags ---+++-- = debian-science-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Wed, 06 Mar 2024 13:42:08 + +Last-Update: Thu, 07 Mar 2024 01:42:07 + Source | Vote | Tasks | Tags ---++-+- = outdated_med-packages.txt = The diff for this file was not included because it is too large. = python-team-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Wed, 06 Mar 2024 13:42:11 + +Last-Update: Thu, 07 Mar 2024 01:42:07 + Source | Vote | Tags ++ View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/de3174f92bc01459957e02e5e68c627ef4df6726 -- View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/de3174f92bc01459957e02e5e68c627ef4df6726 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
