Author: tille Date: 2011-05-02 14:40:01 +0000 (Mon, 02 May 2011) New Revision: 6744
Added: trunk/packages/amap-align/trunk/debian/patches/fix-gcc-4.6.diff Modified: trunk/packages/amap-align/trunk/debian/changelog trunk/packages/amap-align/trunk/debian/compat trunk/packages/amap-align/trunk/debian/control trunk/packages/amap-align/trunk/debian/patches/series Log: Fix gcc-4.6 build error Modified: trunk/packages/amap-align/trunk/debian/changelog =================================================================== --- trunk/packages/amap-align/trunk/debian/changelog 2011-05-02 14:26:40 UTC (rev 6743) +++ trunk/packages/amap-align/trunk/debian/changelog 2011-05-02 14:40:01 UTC (rev 6744) @@ -1,3 +1,12 @@ +amap-align (2.2-3) unstable; urgency=low + + * Standards-Version: 3.9.2 (no changes needed) + * Debhelper 8 (compat+control) + * debian/patches/fix-gcc-4.6.diff: Fix gcc-4.6 build error + Closes: #624990 + + -- Andreas Tille <ti...@debian.org> Mon, 02 May 2011 16:30:17 +0200 + amap-align (2.2-2) unstable; urgency=low [ Charles Plessy ] Modified: trunk/packages/amap-align/trunk/debian/compat =================================================================== --- trunk/packages/amap-align/trunk/debian/compat 2011-05-02 14:26:40 UTC (rev 6743) +++ trunk/packages/amap-align/trunk/debian/compat 2011-05-02 14:40:01 UTC (rev 6744) @@ -1 +1 @@ -7 +8 Modified: trunk/packages/amap-align/trunk/debian/control =================================================================== --- trunk/packages/amap-align/trunk/debian/control 2011-05-02 14:26:40 UTC (rev 6743) +++ trunk/packages/amap-align/trunk/debian/control 2011-05-02 14:40:01 UTC (rev 6744) @@ -5,8 +5,8 @@ DM-Upload-Allowed: yes Uploaders: Charles Plessy <ple...@debian.org>, Andreas Tille <ti...@debian.org> -Build-Depends: debhelper (>= 7), quilt -Standards-Version: 3.9.1 +Build-Depends: debhelper (>= 8), quilt +Standards-Version: 3.9.2 Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/amap-align/trunk/?rev=0&sc=0 Vcs-Svn: svn://svn.debian.org/svn/debian-med/trunk/packages/amap-align/trunk/ X-Homepage: http://bio.math.berkeley.edu/amap/ - upstream seems to be dead @@ -18,8 +18,8 @@ Description: Protein multiple alignment by sequence annealing AMAP is a command line tool to perform multiple alignment of peptidic sequences. It utilizes posterior decoding, and a sequence-annealing - alignment, instead of the traditional progressive alignment method. It - is the only alignment program that allows to control the sensitivity / + alignment, instead of the traditional progressive alignment method. It is + the only alignment program that allows one to control the sensitivity / specificity tradeoff. It is based on the ProbCons source code, but uses alignment metric accuracy and eliminates the consistency transformation. Added: trunk/packages/amap-align/trunk/debian/patches/fix-gcc-4.6.diff =================================================================== --- trunk/packages/amap-align/trunk/debian/patches/fix-gcc-4.6.diff (rev 0) +++ trunk/packages/amap-align/trunk/debian/patches/fix-gcc-4.6.diff 2011-05-02 14:40:01 UTC (rev 6744) @@ -0,0 +1,10 @@ +--- amap-align-2.2.orig/align/SafeVector.h ++++ amap-align-2.2/align/SafeVector.h +@@ -10,6 +10,7 @@ + + #include <cassert> + #include <vector> ++#include <cstddef> + + ///////////////////////////////////////////////////////////////// + // SafeVector Modified: trunk/packages/amap-align/trunk/debian/patches/series =================================================================== --- trunk/packages/amap-align/trunk/debian/patches/series 2011-05-02 14:26:40 UTC (rev 6743) +++ trunk/packages/amap-align/trunk/debian/patches/series 2011-05-02 14:40:01 UTC (rev 6744) @@ -1 +1,2 @@ fix-gcc-4.3.diff +fix-gcc-4.6.diff _______________________________________________ debian-med-commit mailing list debian-med-commit@lists.alioth.debian.org http://lists.alioth.debian.org/mailman/listinfo/debian-med-commit
