[med-svn] [SCM] mia branch, master, updated. upstream/2.0.8-71-g67bbbd6

2013-03-06 Thread Gert Wollny
The following commit has been merged in the master branch: commit fff29df7fa59ab9eb148dbd825b12785f9986d3e Author: Gert Wollny gw.foss...@gmail.com Date: Fri Mar 1 15:34:13 2013 +0100 add patch to correct tests that fail on i386 for floating point accuracy problems diff --git

[med-svn] [SCM] mia branch, master, updated. upstream/2.0.8-71-g67bbbd6

2013-03-06 Thread Gert Wollny
The following commit has been merged in the master branch: commit d205281607d612fb54508e680ffb27c273be7044 Author: Gert Wollny gw.foss...@gmail.com Date: Fri Mar 1 15:35:16 2013 +0100 add patch to correct tests that fail on i386 for floating point accuracy problems diff --git

[med-svn] [SCM] mia branch, master, updated. upstream/2.0.8-71-g67bbbd6

2013-03-06 Thread Gert Wollny
The following commit has been merged in the master branch: commit 39bc89829d67d21789679eeeafe724ce1814aed7 Author: Gert Wollny gw.foss...@gmail.com Date: Mon Mar 4 17:02:34 2013 +0100 add patch to correct pkg-config include path diff --git a/debian/changelog b/debian/changelog index

[med-svn] [SCM] mia branch, master, updated. upstream/2.0.8-71-g67bbbd6

2013-03-06 Thread Gert Wollny
The following commit has been merged in the master branch: commit 2532957bef2ed8721df5495e17db77b2bfb5f29b Author: Gert Wollny gw.foss...@gmail.com Date: Tue Mar 5 11:58:49 2013 +0100 Add description to the patch diff --git a/debian/patches/06_correct_pkgconfig_include_path.patch

[med-svn] [SCM] mia branch, master, updated. upstream/2.0.8-71-g67bbbd6

2013-03-06 Thread Gert Wollny
The following commit has been merged in the master branch: commit b41e4f15bd096e31ca9044913207422c7de16776 Author: Gert Wollny gw.foss...@gmail.com Date: Tue Mar 5 12:00:19 2013 +0100 correct patches to include the debian comments diff --git

[med-svn] [SCM] mia tag, debian/2.0.8-1, created. upstream/2.0.8-65-g850d3e7

2013-03-06 Thread Andreas Tille
The tag, debian/2.0.8-1 has been created at 850d3e7393d02521d5fca0f049666a85364cd467 (commit) - Shortlog commit 850d3e7393d02521d5fca0f049666a85364cd467 Author: Andreas Tille ti...@debian.org Date: Thu Feb 28 13:10:20 2013

[med-svn] r13145 - trunk/community/papers/13_healthcafe

2013-03-06 Thread Andreas Tille
Author: tille Date: 2013-03-06 13:24:21 + (Wed, 06 Mar 2013) New Revision: 13145 Modified: trunk/community/papers/13_healthcafe/paper-text.tex Log: The term perfectly is intended to describe failed and not understand - so I revert this specific change Modified:

[med-svn] r13146 - trunk/community/papers/13_healthcafe

2013-03-06 Thread Andreas Tille
Author: tille Date: 2013-03-06 13:26:43 + (Wed, 06 Mar 2013) New Revision: 13146 Modified: trunk/community/papers/13_healthcafe/paper-text.tex Log: According to my dictionary there is no software_s Modified: trunk/community/papers/13_healthcafe/paper-text.tex

[med-svn] r13147 - trunk/community/papers/13_healthcafe

2013-03-06 Thread Andreas Tille
Author: tille Date: 2013-03-06 14:21:24 + (Wed, 06 Mar 2013) New Revision: 13147 Modified: trunk/community/papers/13_healthcafe/debian-med-healthcafe.tex trunk/community/papers/13_healthcafe/paper-text.tex Log: There was some very helpful set of change suggestions provided by

[med-svn] r13148 - trunk/packages/gnuhealth/trunk/debian

2013-03-06 Thread Emilien Klein
Author: e2jk-guest Date: 2013-03-06 19:58:58 + (Wed, 06 Mar 2013) New Revision: 13148 Modified: trunk/packages/gnuhealth/trunk/debian/control Log: Revert Standards-Version back to 3.9.4 Modified: trunk/packages/gnuhealth/trunk/debian/control

[med-svn] r13149 - trunk/packages/gnuhealth/trunk/debian

2013-03-06 Thread Emilien Klein
Author: e2jk-guest Date: 2013-03-06 20:06:00 + (Wed, 06 Mar 2013) New Revision: 13149 Modified: trunk/packages/gnuhealth/trunk/debian/compat trunk/packages/gnuhealth/trunk/debian/control trunk/packages/gnuhealth/trunk/debian/copyright Log: Reverting other changes as discussed in

[med-svn] r13150 - trunk/packages/gnuhealth/trunk/debian

2013-03-06 Thread Emilien Klein
Author: e2jk-guest Date: 2013-03-06 20:27:26 + (Wed, 06 Mar 2013) New Revision: 13150 Modified: trunk/packages/gnuhealth/trunk/debian/watch Log: Run uupdate from debian/watch to create an updated source tree Modified: trunk/packages/gnuhealth/trunk/debian/watch

[med-svn] r13151 - trunk/packages/gnuhealth/trunk/debian

2013-03-06 Thread Emilien Klein
Author: e2jk-guest Date: 2013-03-06 20:46:05 + (Wed, 06 Mar 2013) New Revision: 13151 Modified: trunk/packages/gnuhealth/trunk/debian/changelog trunk/packages/gnuhealth/trunk/debian/control Log: Update package for new version 1.8.0-1 Modified:

[med-svn] r13152 - trunk/packages/gnuhealth/trunk/debian

2013-03-06 Thread Emilien Klein
Author: e2jk-guest Date: 2013-03-06 22:45:09 + (Wed, 06 Mar 2013) New Revision: 13152 Modified: trunk/packages/gnuhealth/trunk/debian/TODO.Debian Log: Update the list of things to do Modified: trunk/packages/gnuhealth/trunk/debian/TODO.Debian

[med-svn] [SCM] bwa branch, master, updated. debian/0.6.1-1-22-g71fd912

2013-03-06 Thread Charles Plessy
The following commit has been merged in the master branch: commit 5c3808ffb4d79a56a49bfd1789e6d8aaec9c64c5 Merge: 293285a78cb5a58e880426a9337b7663edbd1e48 947c8141c58d61196b274d19fc9273ebe688ce2e Author: Charles Plessy ple...@debian.org Date: Thu Mar 7 14:25:27 2013 +0900 Merge tag

[med-svn] [SCM] bwa branch, master, updated. debian/0.6.1-1-22-g71fd912

2013-03-06 Thread Charles Plessy
The following commit has been merged in the master branch: commit 3e7768367b78edc73ac6fb1a8b9a5f86c6ccb99b Author: Charles Plessy ple...@debian.org Date: Thu Mar 7 14:29:51 2013 +0900 New file with new license in BWA 0.7.0. diff --git a/debian/copyright b/debian/copyright index

[med-svn] [SCM] bwa branch, master, updated. debian/0.6.1-1-22-g71fd912

2013-03-06 Thread Charles Plessy
The following commit has been merged in the master branch: commit c024b3e23f952b82cccb37f9163bf1b07f141e06 Author: Charles Plessy ple...@debian.org Date: Thu Mar 7 14:40:24 2013 +0900 Version 0.7.0-1, not uploaded yet. diff --git a/debian/changelog b/debian/changelog index d62390d..06e2723

[med-svn] [SCM] bwa branch, master, updated. debian/0.6.1-1-22-g71fd912

2013-03-06 Thread Charles Plessy
The following commit has been merged in the master branch: commit 71fd912fa973f64d11300a46bd548e3baaf44fc1 Author: Charles Plessy ple...@debian.org Date: Thu Mar 7 14:45:16 2013 +0900 Complies with machine-readable format version 1.0. diff --git a/debian/copyright b/debian/copyright index

[med-svn] [SCM] bwa branch, master, updated. debian/0.6.1-1-22-g71fd912

2013-03-06 Thread Charles Plessy
The following commit has been merged in the master branch: commit 23ffd084158a7638e98abd38f8491b0d8a0cf49c Author: Charles Plessy ple...@debian.org Date: Thu Mar 7 14:43:25 2013 +0900 Upaded changelog. It looks like support for SOLiD was removed. diff --git a/debian/changelog

[med-svn] [SCM] bwa branch, master, updated. debian/0.6.1-1-22-g71fd912

2013-03-06 Thread Charles Plessy
The following commit has been merged in the master branch: commit 4d08b8184773aa4ce6e6e58db59276b6a47dc71f Author: Charles Plessy ple...@debian.org Date: Thu Mar 7 14:42:10 2013 +0900 solid2fastq.pl was removed upstream. diff --git a/debian/install b/debian/install index 1918bc3..71eecd8

[med-svn] [SCM] bwa branch, master, updated. debian/0.6.1-1-22-g71fd912

2013-03-06 Thread Charles Plessy
The following commit has been merged in the master branch: commit c330e89b417681cd118a0368cc4fcb647b9c3e61 Author: Charles Plessy ple...@debian.org Date: Thu Mar 7 14:38:21 2013 +0900 Updated list of BWA's commands. diff --git a/debian/bash_completion/bwa b/debian/bash_completion/bwa index

[med-svn] [SCM] bwa annotated tag, upstream/0.7.0, created. upstream/0.7.0

2013-03-06 Thread Charles Plessy
The annotated tag, upstream/0.7.0 has been created at b5da9b3ee4861fb8a709173ad99eed14f5918c35 (tag) tagging 947c8141c58d61196b274d19fc9273ebe688ce2e (commit) replaces upstream/0.6.2 tagged by Charles Plessy on Thu Mar 7 14:25:23 2013 +0900 - Shortlog

[med-svn] [SCM] bwa branch, pristine-tar, updated. 319ea223af6c930ff26d8cfbb60af1560d319177

2013-03-06 Thread Charles Plessy
The following commit has been merged in the pristine-tar branch: commit 319ea223af6c930ff26d8cfbb60af1560d319177 Author: Charles Plessy ple...@debian.org Date: Thu Mar 7 14:25:23 2013 +0900 pristine-tar data for bwa_0.7.0.orig.tar.bz2 diff --git a/bwa_0.7.0.orig.tar.bz2.delta