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Aaron M. Ucko pushed new tag debian/6.1.20170106-3 at Debian Med / ncbi-tools6
--
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Aaron M. Ucko pushed new tag debian/6.1.20170106-4 at Debian Med / ncbi-tools6
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Aaron M. Ucko pushed to branch master at Debian Med / ncbi-tools6
Commits:
208f471c by Aaron M. Ucko at 2018-06-25T21:25:10-04:00
Start work on ncbi-tools6 6.1.20170106-4, primarily for #902364.
- - - - -
8a166fb0 by Aaron M. Ucko at 2018-06-25T21:33:28-04:00
control: Mark data reshuffling w
.
+
+ -- Aaron M. Ucko Thu, 10 May 2012 18:22:38 -0400
+
ncbi-blast+ (2.2.26-2) unstable; urgency=low
* debian/patches/wrong_path_to_touch.patch :Fix upstream FTBFS on the Hurd
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gency=low
* NOT YET RELEASED.
+
+ [Andreas Tille]
+ * debian/control: Modernize Vcs-* fields.
- -- Aaron M. Ucko Thu, 10 May 2012 18:22:38 -0400
+ -- Aaron M. Ucko Thu, 10 May 2012 18:27:00 -0400
ncbi-blast+ (2.2.26-2) unstable; urgenc
:37:37 UTC
(rev 10818)
@@ -2,10 +2,18 @@
* NOT YET RELEASED.
- [Andreas Tille]
+ [ Aaron M. Ucko ]
+ * debian/patches/fix_gcc47_errors: fix various GCC 4.7 compilation
+errors and warnings. (Closes: #669679.)
+- Explicitly qualify more dependent names originating in base
-* fields.
- -- Aaron M. Ucko Thu, 10 May 2012 20:37:32 -0400
+ -- Aaron M. Ucko Thu, 10 May 2012 23:29:17 -0400
ncbi-blast+ (2.2.26-2) unstable; urgency=low
Modified: trunk/packages/ncbi-blast+/trunk/debian/control
===
--- trunk
bject: build executables with -fPIE, not -fPIC
+
+* -fPIC is only useful for shared libraries; substitute -fPIE (to be
+ accompanied by appropriate APP_LDFLAGS) when building executables.
+
+Author: Aaron M. Ucko
+Last-Update: 2012-05-10
+--- a/c++/src/build-system/Makefile.app.in
b/c++/src/
s-* fields.
- -- Aaron M. Ucko Thu, 10 May 2012 23:29:17 -0400
+ -- Aaron M. Ucko Thu, 10 May 2012 23:40:39 -0400
ncbi-blast+ (2.2.26-2) unstable; urgency=low
Modified: trunk/packages/ncbi-blast+/trunk/debian/rules
===
+ (2.2.26-3) unstable; urgency=low
- * NOT YET RELEASED.
-
[ Aaron M. Ucko ]
* debian/patches/fix_gcc47_errors: fix various GCC 4.7 compilation
errors and warnings. (Closes: #669679.)
@@ -14,11 +12,11 @@
(use_pie_for_apps) to reflect the need to build executables and
/patches/fix_lib_deps: link makembindex and srsearch against
-libxconnect rather than libconnect for consistency with libblast,
-which uses the former for consistency with other projects.
-
- -- Aaron M. Ucko Mon, 29 Aug 2011 12:31:05 -0400
-
-ncbi-blast+ (2.2.25-4) unstable; urgency=low
loses: #701756. LP: #1133488.)
+
+ [ Andreas Tille ]
* debian/upstream: Added citation information
- -- Andreas Tille Sun, 06 May 2012 18:18:15 +0200
+ -- Aaron M. Ucko Wed, 29 May 2013 18:18:01 -0400
njplot (2.4-1) unstable; urgency=low
Added: trunk/packages/njplot/trunk/debian/pa
ebian/changelog2013-05-29 22:21:46 UTC
(rev 13756)
@@ -1,5 +1,9 @@
njplot (2.4-2) UNRELEASED; urgency=low
+ [ Aaron M. Ucko ]
+ * Eliminate extraneous build dependencies, most critically lesstif2-dev,
+as Vibrant has switched to Motif now that it's free. (Closes: #710205.)
+
(new): Explicitly link njplot and
@@ -12,7 +13,7 @@
[ Andreas Tille ]
* debian/upstream: Added citation information
- -- Aaron M. Ucko Wed, 29 May 2013 18:21:40 -0400
+ -- Aaron M. Ucko Wed, 29 May 2013 18:36:54 -0400
njplot (2.4-1) unstable; urgency=low
Modified: trunk/packages/n
s/fix-underlinking.patch (new): Explicitly link njplot and
@@ -13,7 +14,7 @@
[ Andreas Tille ]
* debian/upstream: Added citation information
- -- Aaron M. Ucko Wed, 29 May 2013 18:36:54 -0400
+ -- Aaron M. Ucko Wed, 29 May 2013 18:40:10 -0400
njplot (2.4-1) unstable; urgency=low
Mod
; urgency=low
[ Aaron M. Ucko ]
+ * Team upload.
* Eliminate extraneous build dependencies, most critically lesstif2-dev,
as Vibrant has switched to Motif now that it's free. (Closes: #710205.)
* debian/rules: Contrive to pass hardened CPPFLAGS and LDFLAGS.
@@ -14,7 +15,7 @@
[ An
/njplot/tags/2.4-2/debian/changelog
(rev 0)
+++ trunk/packages/njplot/tags/2.4-2/debian/changelog 2013-05-29 22:46:28 UTC
(rev 13760)
@@ -0,0 +1,268 @@
+njplot (2.4-2) unstable; urgency=low
+
+ [ Aaron M. Ucko ]
+ * Team upload.
+ * Eliminate extraneous build dep
override.
- -- Aaron M. Ucko Sun, 02 Jun 2013 22:55:40 -0400
+ -- Aaron M. Ucko Sun, 02 Jun 2013 22:59:08 -0400
ncbi-blast+ (2.2.28-1) unstable; urgency=low
Modified: trunk/packages/ncbi-blast+/trunk/debian/patches/use_pie_for_apps
+
+ * NOT RELEASED YET.
+
+ -- Aaron M. Ucko Sun, 02 Jun 2013 22:55:40 -0400
+
ncbi-blast+ (2.2.28-1) unstable; urgency=low
* New upstream release
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-pie, to avoid giving project_tree_builder a partial PIE
treatment that now fails on mips and mipsel. (Closes: #710807.)
* debian/rules: Retire redundant APP_LDFLAGS override.
+ * Standards-Version: 3.9.4. (Already compliant.)
+
+ -- Aaron M. Ucko Sun, 02 Jun 2013 23:00:23 -0400
: Retire redundant APP_LDFLAGS override.
* Standards-Version: 3.9.4. (Already compliant.)
- -- Aaron M. Ucko Sun, 02 Jun 2013 23:00:23 -0400
+ -- Aaron M. Ucko Sun, 02 Jun 2013 23:00:44 -0400
ncbi-blast+ (2.2.28-1) unstable; urgency=low
Sallou Fri, 21 Sep 2012 17:25:41 +0200
-
-ncbi-blast+ (2.2.26-3) unstable; urgency=low
-
- [ Aaron M. Ucko ]
- * debian/patches/fix_gcc47_errors: fix various GCC 4.7 compilation
-errors and warnings. (Closes: #669679.)
-- Explicitly qualify more dependent names originating in base templates
Author: ucko
Date: 2015-02-17 03:27:36 + (Tue, 17 Feb 2015)
New Revision: 18783
Modified:
trunk/packages/ncbi-blast+/trunk/debian/changelog
Log:
changelog: 2.2.30-1 went to experimental.
Modified: trunk/packages/ncbi-blast+/trunk/debian/changelog
==
=medium
+
+ * NOT YET RELEASED.
+
+ -- Aaron M. Ucko Mon, 16 Feb 2015 22:29:29 -0500
+
ncbi-blast+ (2.2.30-1) experimental; urgency=medium
* New upstream release
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. Ucko Mon, 16 Feb 2015 22:29:29 -0500
+ -- Aaron M. Ucko Mon, 16 Feb 2015 22:38:37 -0500
ncbi-blast+ (2.2.30-1) experimental; urgency=medium
Added: trunk/packages/ncbi-blast+/trunk/debian/patches/allow_gcc5
===
--- trunk
+ncbi-blast+ (2.2.30-2) experimental; urgency=medium
- * NOT YET RELEASED.
* d/patches/allow_gcc5 (new): Allow compilation with GCC 5, per upstream.
(Closes: #778021.)
- -- Aaron M. Ucko Mon, 16 Feb 2015 22:38:37 -0500
+ -- Aaron M. Ucko Mon, 16 Feb 2015 22:38:50 -0500
ncbi-blast
/patches/include_typeinfo: Patch include/corelib/ncbistl.hpp to
-ensure sufficient coverage; fix typos in patch headers. (Closes: #753190.)
- * Standards-Version: 3.9.4. (Already compliant.)
-
- -- Aaron M. Ucko Tue, 01 Jul 2014 18:27:46 -0400
-
-ncbi-blast+ (2.2.29-2) unstable; urgency=medium
(rev 19465)
@@ -1,3 +1,9 @@
+ncbi-blast+ (2.2.30-4) UNRELEASED; urgency=medium
+
+ * NOT YET RELEASED.
+
+ -- Aaron M. Ucko Thu, 02 Jul 2015 16:16:36 -0400
+
ncbi-blast+ (2.2.30-3) unstable; urgency=medium
* Switch to unstable after unfreeze
/bmconst.h to fix builds with GCC 5 on platforms
+such as arm64 on which char is unsigned. (Closes: #790667.)
- -- Aaron M. Ucko Thu, 02 Jul 2015 16:16:36 -0400
+ -- Aaron M. Ucko Thu, 02 Jul 2015 16:20:49 -0400
ncbi-blast+ (2.2.30-3) unstable; urgency=medium
Modified: trunk/packages/ncbi
- * NOT YET RELEASED.
* d/patches/fix_compilation: Add an upstream patch to
include/util/bitset/bmconst.h to fix builds with GCC 5 on platforms
such as arm64 on which char is unsigned. (Closes: #790667.)
- -- Aaron M. Ucko Thu, 02 Jul 2015 16:20:49 -0400
+ -- Aaron M. Ucko Thu, 02
+ncbi-blast+ (2.2.30-4) unstable; urgency=medium
* d/patches/fix_compilation: Add an upstream patch to
include/util/bitset/bmconst.h to fix builds with GCC 5 on platforms
such as arm64 on which char is unsigned. (Closes: #790667.)
- -- Aaron M. Ucko Thu, 02 Jul 2015 16:21:55
after unfreeze.
-
- -- Olivier Sallou Mon, 18 May 2015 14:34:50 +0200
-
-ncbi-blast+ (2.2.30-2) experimental; urgency=medium
-
- * d/patches/allow_gcc5 (new): Allow compilation with GCC 5, per upstream.
-(Closes: #778021.)
-
- -- Aaron M. Ucko Mon, 16 Feb 2015 22:38:50 -0500
-
-ncbi-blast
YET RELEASED.
+
+ -- Aaron M. Ucko Wed, 04 Sep 2013 22:32:40 -0400
+
mothur (1.31.2+dfsg-1) unstable; urgency=low
* New upstream version
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d. (Closes: #721770.)
- -- Aaron M. Ucko Wed, 04 Sep 2013 22:32:40 -0400
+ -- Aaron M. Ucko Wed, 04 Sep 2013 22:35:45 -0400
mothur (1.31.2+dfsg-1) unstable; urgency=low
Modified: trunk/packages/mothur/trunk/debian/patches/makefile.patch
=
(1.31.2+dfsg-2) unstable; urgency=low
- * NOT YET RELEASED.
+ * Team upload.
* debian/patches/makefile.patch: Leave off -m64, which ia64 doesn't
support and other 64-bit architectures don't need. (Closes: #721770.)
- -- Aaron M. Ucko Wed, 04 Sep 2013 22:35:45 -0400
+ -- Aar
,0 +1,185 @@
+mothur (1.31.2+dfsg-2) unstable; urgency=low
+
+ * Team upload.
+ * debian/patches/makefile.patch: Leave off -m64, which ia64 doesn't
+support and other 64-bit architectures don't need. (Closes: #721770.)
+
+ -- Aaron M. Ucko Wed, 04 Sep 2013 22:37:31 -0400
+
+mothur
+
+ * NOT YET RELEASED.
+
+ -- Aaron M. Ucko Mon, 30 Jun 2014 10:59:14 -0400
+
ncbi-blast+ (2.2.29-2) unstable; urgency=medium
* d/patches/include_typeinfo (Closes: #753190).
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patch headers. (Closes: #753190.)
- -- Aaron M. Ucko Mon, 30 Jun 2014 10:59:14 -0400
+ -- Aaron M. Ucko Mon, 30 Jun 2014 11:02:45 -0400
ncbi-blast+ (2.2.29-2) unstable; urgency=medium
Modified: trunk/packages/ncbi-blast+/trunk/debian/patches/include_typeinfo
RELEASED.
* debian/patches/include_typeinfo: Patch include/corelib/ncbistl.hpp to
ensure sufficient coverage; fix typos in patch headers. (Closes: #753190.)
+ * Standards-Version: 3.9.4. (Already compliant.)
- -- Aaron M. Ucko Mon, 30 Jun 2014 11:02:45 -0400
+ -- Aaron M. Ucko Mon
-blast+ (2.2.29-3) unstable; urgency=medium
- * NOT YET RELEASED.
* debian/patches/include_typeinfo: Patch include/corelib/ncbistl.hpp to
ensure sufficient coverage; fix typos in patch headers. (Closes: #753190.)
* Standards-Version: 3.9.4. (Already compliant.)
- -- Aaron M. Ucko
/include_typeinfo: Patch include/corelib/ncbistl.hpp to
-ensure sufficient coverage; fix typos in patch headers. (Closes: #753190.)
-
- -- Aaron M. Ucko Mon, 30 Jun 2014 11:02:45 -0400
-
-ncbi-blast+ (2.2.29-2) unstable; urgency=medium
-
- * d/patches/include_typeinfo (Closes: #753190).
-
- -- Olivier
YET RELEASED.
+ * Team upload.
+
+ -- Aaron M. Ucko Tue, 26 Apr 2011 18:44:03 -0400
+
gbrowse (2.26~dfsg-1) experimental; urgency=low
[ Olivier Sallou ]
___
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http
: #624130.)
- -- Aaron M. Ucko Tue, 26 Apr 2011 18:44:03 -0400
+ -- Aaron M. Ucko Tue, 26 Apr 2011 18:48:36 -0400
gbrowse (2.26~dfsg-1) experimental; urgency=low
Modified: trunk/packages/gbrowse/trunk/debian/gbrowse.dirs
.)
- -- Aaron M. Ucko Tue, 26 Apr 2011 18:48:36 -0400
+ -- Aaron M. Ucko Tue, 26 Apr 2011 18:50:05 -0400
gbrowse (2.26~dfsg-1) experimental; urgency=low
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-2) unstable; urgency=low
+
+ * Team upload.
+ * Upload to unstable, where -1 accidentally landed.
+ * debian/{gbrowse.dirs,rules}: Tweak to avoid errors when building just
+the architecture-dependent gbrowse-calign package. (Closes: #624130.)
+
+ -- Aaron M. Ucko Tue, 26 Apr 2011 18:50:05
@@
* Upload to unstable, where -1 accidentally landed.
* debian/{gbrowse.dirs,rules}: Tweak to avoid errors when building just
the architecture-dependent gbrowse-calign package. (Closes: #624130.)
+ * debian/control: Temporarily add myself to uploaders to placate dak.
- -- Aaron M. Ucko Tue, 26
Author: ucko
Date: 2011-04-27 01:49:30 + (Wed, 27 Apr 2011)
New Revision: 6657
Removed:
trunk/packages/gbrowse/tags/2.26~dfsg-2/
Log:
[svn-buildpackage] Removing old tag gbrowse-2.26~dfsg-2
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architecture-dependent gbrowse-calign package. (Closes: #624130.)
+ * debian/control: Temporarily add myself to uploaders to placate dak.
+
+ -- Aaron M. Ucko Tue, 26 Apr 2011 21:46:23 -0400
+
+gbrowse (2.26~dfsg-1) experimental; urgency=low
+
+ [ Olivier Sallou ]
+ * Initial Release (Closes
(2.26~dfsg-3) unstable; urgency=low
+
+ * Bump version to compensate for botched uploads of -2. (It's been a
+long day.)
+
+ -- Aaron M. Ucko Tue, 26 Apr 2011 22:55:12 -0400
+
gbrowse (2.26~dfsg-2) unstable; urgency=low
* Team upload.
/gbrowse/tags/2.26~dfsg-3/debian/changelog2011-04-27
02:58:41 UTC (rev 6660)
@@ -0,0 +1,23 @@
+gbrowse (2.26~dfsg-3) unstable; urgency=low
+
+ * Bump version to compensate for botched uploads of -2. (It's been a
+long day.)
+
+ -- Aaron M. Ucko Tue, 26 Apr 2011 22:55:12 -0400
+
+gb
Author: ucko
Date: 2011-05-28 18:12:33 + (Sat, 28 May 2011)
New Revision: 6872
Added:
trunk/packages/ncbi-blast+/
Modified:
trunk/packages/ncbi-blast+/trunk/debian/control
Log:
Copy ncbi-blast-plus to ncbi-blast+ per the current source package name
(and upstream's naming); further change
Author: ucko
Date: 2011-05-28 18:37:14 + (Sat, 28 May 2011)
New Revision: 6873
Modified:
trunk/packages/ncbi-blast+/trunk/debian/rules
Log:
Override dh_auto_install in favor of explicitly installing files of interest
(executables and shared libraries).
Modified: trunk/packages/ncbi-blast+
Author: ucko
Date: 2011-05-28 18:53:14 + (Sat, 28 May 2011)
New Revision: 6874
Modified:
trunk/packages/ncbi-blast+/trunk/debian/rules
Log:
Rework configure invocation:
+ --with-runpath=/usr/lib/ncbi-blast+ (where the libraries will end up)
+ --with-flat-makefile (making it easier to skip i
Author: ucko
Date: 2011-05-28 18:56:00 + (Sat, 28 May 2011)
New Revision: 6875
Modified:
trunk/packages/ncbi-blast+/trunk/debian/rules
Log:
Override dh_auto_build to focus on selected subtrees and their dependencies
(as made possible by running configure --with-flat-makefile).
Modified: t
Author: ucko
Date: 2011-05-28 19:54:53 + (Sat, 28 May 2011)
New Revision: 6876
Modified:
trunk/packages/ncbi-blast+/trunk/debian/legacy/legacy.sh
trunk/packages/ncbi-blast+/trunk/debian/rules
Log:
Rework override_dh_install; adjust legacy.sh accordingly.
* Don't bother with ${CURDIR}, wh
Author: ucko
Date: 2011-05-29 14:51:56 + (Sun, 29 May 2011)
New Revision: 6877
Added:
trunk/packages/ncbi-blast-plus/trunk/debian/ncbi-blast+.dirs
Modified:
trunk/packages/ncbi-blast-plus/trunk/debian/rules
Log:
Override dh_auto_install in favor of explicitly installing files of interest
Author: ucko
Date: 2011-05-29 14:53:03 + (Sun, 29 May 2011)
New Revision: 6878
Modified:
trunk/packages/ncbi-blast-plus/trunk/debian/rules
Log:
Rework configure invocation:
+ --with-runpath=/usr/lib/ncbi-blast+ (where the libraries will end up)
+ --with-flat-makefile (making it easier to sk
Author: ucko
Date: 2011-05-29 14:53:58 + (Sun, 29 May 2011)
New Revision: 6879
Modified:
trunk/packages/ncbi-blast-plus/trunk/debian/rules
Log:
Override dh_auto_build to focus on selected subtrees and their dependencies
(as made possible by running configure --with-flat-makefile).
Modifie
Author: ucko
Date: 2011-05-29 14:54:56 + (Sun, 29 May 2011)
New Revision: 6880
Modified:
trunk/packages/ncbi-blast-plus/trunk/debian/legacy/legacy.sh
trunk/packages/ncbi-blast-plus/trunk/debian/rules
Log:
Rework override_dh_install; adjust debian/legacy/legacy.sh accordingly.
* Don't bot
Author: ucko
Date: 2011-05-29 15:03:02 + (Sun, 29 May 2011)
New Revision: 6881
Modified:
trunk/packages/ncbi-blast-plus/trunk/debian/control
Log:
Clean up build and runtime dependencies.
* Don't explicitly depend on runtime libraries or related utilities.
* Replace libpcre++-dev by libpcre3
ial/datatool/datatool.sh
-+++ b/c++/src/serial/datatool/datatool.sh
-@@ -1,4 +1,4 @@
--#! /bin/sh
-+#! /bin/bash
- # $Id: datatool.sh 79502 2006-03-23 19:45:38Z gouriano $
- #
+Author: Aaron M. Ucko
+Last-Update: 2011-05-23
+--- a/c++/scripts/common/check/check_add.sh2011-05-23 18:49:10.0
Author: ucko
Date: 2011-05-29 15:10:55 + (Sun, 29 May 2011)
New Revision: 6883
Modified:
trunk/packages/ncbi-blast-plus/trunk/debian/rules
Log:
Report any test suite errors in more detail but otherwise ignore them, as some
tests will likely fail in unnetworked environments (as on some autob
Author: ucko
Date: 2011-05-29 15:12:54 + (Sun, 29 May 2011)
New Revision: 6884
Modified:
trunk/packages/ncbi-blast-plus/trunk/debian/rules
Log:
Rework override_dh_clean to clean *all* files produced at build time.
Modified: trunk/packages/ncbi-blast-plus/trunk/debian/rules
===
Author: ucko
Date: 2011-05-29 15:14:32 + (Sun, 29 May 2011)
New Revision: 6885
Modified:
trunk/packages/ncbi-blast-plus/trunk/debian/rules
Log:
Build with DLL_LDFLAGS=-Wl,--as-needed, addressing some dpkg-shlibdeps warnings.
Modified: trunk/packages/ncbi-blast-plus/trunk/debian/rules
Author: ucko
Date: 2011-05-29 15:17:22 + (Sun, 29 May 2011)
New Revision: 6886
Removed:
trunk/packages/ncbi-blast-plus/trunk/debian/postinst
trunk/packages/ncbi-blast-plus/trunk/debian/postrm
Log:
Retire postinst and postrm scripts, obsolete as of r6878.
Deleted: trunk/packages/ncbi-bl
Author: ucko
Date: 2011-05-29 15:21:07 + (Sun, 29 May 2011)
New Revision: 6887
Modified:
trunk/packages/ncbi-blast-plus/trunk/debian/rules
Log:
Invoke dh --with autotools_dev to ensure use of fresh config.{guess,sub} files.
Modified: trunk/packages/ncbi-blast-plus/trunk/debian/rules
=
Author: ucko
Date: 2011-05-29 15:35:21 + (Sun, 29 May 2011)
New Revision: 6888
Modified:
trunk/packages/ncbi-blast-plus/trunk/debian/copyright
Log:
Clean up copyright file.
* Remove the stanza for (c++/)scripts/projects/xmlwrapp/*, whose LICENSE
file documents material absent from the ncb
Author: ucko
Date: 2011-05-29 15:42:19 + (Sun, 29 May 2011)
New Revision: 6889
Added:
trunk/packages/ncbi-blast-plus/trunk/debian/patches/fix_gcc46_errors
trunk/packages/ncbi-blast-plus/trunk/debian/patches/legacy_rename_rpsblast
Removed:
trunk/packages/ncbi-blast-plus/trunk/debian/pa
Author: ucko
Date: 2011-05-29 15:56:37 + (Sun, 29 May 2011)
New Revision: 6890
Removed:
trunk/packages/ncbi-blast+/
Log:
Drop ncbi-blast+ per Olivier's request to stick with ncbi-blast-plus for now.
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Author: ucko
Date: 2011-05-30 15:31:19 + (Mon, 30 May 2011)
New Revision: 6893
Modified:
trunk/packages/ncbi-blast-plus/trunk/debian/rules
Log:
override_dh_auto_configure: respect existing LD_LIBRARY_PATH settings,
notably from fakeroot, though best practice remains to use it more
selective
Author: ucko
Date: 2011-06-07 14:29:43 + (Tue, 07 Jun 2011)
New Revision: 6928
Modified:
trunk/packages/ncbi-blast+/trunk/debian/control
Log:
Update Vcs-* fields per move to ncbi-blast+ and new Alioth setup.
Modified: trunk/packages/ncbi-blast+/trunk/debian/control
===
Author: ucko
Date: 2011-06-07 22:15:20 + (Tue, 07 Jun 2011)
New Revision: 6932
Modified:
trunk/packages/ncbi-blast+/trunk/debian/changelog
Log:
Finalize ncbi-blast+ 2.2.25-1 for upload, updating changelog timestamp.
Modified: trunk/packages/ncbi-blast+/trunk/debian/changelog
=
Author: ucko
Date: 2011-06-07 22:23:34 + (Tue, 07 Jun 2011)
New Revision: 6933
Added:
trunk/packages/ncbi-blast+/tags/
Log:
Create tags directory for ncbi-blast+.
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Author: ucko
Date: 2011-06-07 22:57:21 + (Tue, 07 Jun 2011)
New Revision: 6934
Added:
trunk/packages/ncbi-blast+/tags/2.2.25-1/
trunk/packages/ncbi-blast+/tags/2.2.25-1/debian/changelog
Removed:
trunk/packages/ncbi-blast+/tags/2.2.25-1/debian/changelog
Log:
[svn-buildpackage] Tagging
@@
+ncbi-blast+ (2.2.25-2) UNRELEASED; urgency=low
+
+ * Team upload.
+ * NOT RELEASED YET
+
+ -- Aaron M. Ucko Wed, 08 Jun 2011 20:10:46 -0400
+
ncbi-blast+ (2.2.25-1) unstable; urgency=low
* Initial release (Closes: #624394)
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. Ucko Wed, 08 Jun 2011 20:10:46 -0400
+ -- Aaron M. Ucko Wed, 08 Jun 2011 20:20:13 -0400
ncbi-blast+ (2.2.25-1) unstable; urgency=low
Modified: trunk/packages/ncbi-blast+/trunk/debian/rules
===
--- trunk/packages/ncbi-blast
(spuriously in the case of powerpc,
+ whose detection the patch fixes as well).
- -- Aaron M. Ucko Wed, 08 Jun 2011 20:20:13 -0400
+ -- Aaron M. Ucko Wed, 08 Jun 2011 20:35:16 -0400
ncbi-blast+ (2.2.25-1) unstable; urgency=low
Modified: trunk/packages/ncbi-blast+/trunk/debian/patches
port_other_cpus (new; committed upstream too):
build correctly on architectures that wound up defining
NCBI_SLOW_ATOMIC_SWAP (spuriously in the case of powerpc,
whose detection the patch fixes as well).
- -- Aaron M. Ucko Wed, 08 Jun 2011 20:35:16 -0400
+ -- Aaron M. Ucko We
on which g++ otherwise crashes. :-/
- debian/patches/support_other_cpus (new; committed upstream too):
build correctly on architectures that wound up defining
NCBI_SLOW_ATOMIC_SWAP (spuriously in the case of powerpc,
whose detection the patch fixes as well).
- -- Aaron M.
Author: ucko
Date: 2011-06-09 01:22:17 + (Thu, 09 Jun 2011)
New Revision: 6956
Modified:
trunk/packages/ncbi-blast+/trunk/debian/rules
Log:
Correct backwards test in previous revision, which accidentally kept
-O2 *only* on mips(el).
Modified: trunk/packages/ncbi-blast+/trunk/debian/rules
@@
NCBI_SLOW_ATOMIC_SWAP (spuriously in the case of powerpc,
whose detection the patch fixes as well).
- -- Aaron M. Ucko Wed, 08 Jun 2011 21:16:49 -0400
+ -- Aaron M. Ucko Wed, 08 Jun 2011 21:42:52 -0400
ncbi-blast+ (2.2.25-1) unstable; urgency=low
+ -- Aaron M. Ucko Wed, 08 Jun 2011 21:42:52 -0400
+
+ncbi-blast+ (2.2.25-1) unstable; urgency=low
+
+ * Initial release (Closes: #624394)
+
+ -- Olivier Sallou Wed, 08 Jun 2011 00:15:15 +0200
Deleted: trunk/packages/ncbi-blast+/tags/2.2.25-2/debian/patc
@@
+ncbi-blast+ (2.2.25-3) UNRELEASED; urgency=low
+
+ * NOT RELEASED YET
+ * Team upload.
+
+ -- Aaron M. Ucko Thu, 09 Jun 2011 19:17:22 -0400
+
ncbi-blast+ (2.2.25-2) unstable; urgency=low
* Team upload.
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debian
non-Linux
+ architectures. (Really closes: #629656, with any luck.)
- -- Aaron M. Ucko Thu, 09 Jun 2011 19:17:22 -0400
+ -- Aaron M. Ucko Thu, 09 Jun 2011 19:19:46 -0400
ncbi-blast+ (2.2.25-2) unstable; urgency=low
Modified: trunk/packages/ncbi-blast+/trunk/debian/rules
. Ucko Thu, 09 Jun 2011 19:19:46 -0400
+ -- Aaron M. Ucko Thu, 09 Jun 2011 19:22:24 -0400
ncbi-blast+ (2.2.25-2) unstable; urgency=low
Modified: trunk/packages/ncbi-blast+/trunk/debian/rules
===
--- trunk/packages/ncbi-blast
from users with broken BASH_ENV scripts that change directories).
- -- Aaron M. Ucko Thu, 09 Jun 2011 19:22:24 -0400
+ -- Aaron M. Ucko Thu, 09 Jun 2011 19:25:45 -0400
ncbi-blast+ (2.2.25-2) unstable; urgency=low
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closes: #629656, with any luck.)
+- Force CONFIG_SHELL=/bin/bash to avoid lossage that can occur with zsh4
+ masquerading as ksh, which configure otherwise favors (due to complaints
+ from users with broken BASH_ENV scripts that change directories).
+
+ -- Aaron M. Ucko Thu, 09 Jun 2011
; urgency=low
+
+ * NOT YET RELEASED.
+ * Team upload.
+
+ -- Aaron M. Ucko Fri, 10 Jun 2011 20:29:14 -0400
+
ncbi-blast+ (2.2.25-3) unstable; urgency=low
* Team upload.
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