Andreas Tille pushed to branch master at Debian Med / htslib
Commits: 0eb2a7cd by Andreas Tille at 2018-02-14T13:13:09+01:00 Update symbols file - - - - - 60702c25 by Andreas Tille at 2018-02-14T13:16:38+01:00 Upload to unstable - - - - - 2 changed files: - debian/changelog - debian/libhts2.symbols Changes: ===================================== debian/changelog ===================================== --- a/debian/changelog +++ b/debian/changelog @@ -1,10 +1,11 @@ -htslib (1.7-2) UNRELEASED; urgency=medium +htslib (1.7-2) unstable; urgency=medium * Move all needed files into htslib-test package Closes: #890303 * Document how to test the package + * Update symbols file - -- Andreas Tille <ti...@debian.org> Wed, 14 Feb 2018 09:43:36 +0100 + -- Andreas Tille <ti...@debian.org> Wed, 14 Feb 2018 13:13:18 +0100 htslib (1.7-1) unstable; urgency=medium ===================================== debian/libhts2.symbols ===================================== --- a/debian/libhts2.symbols +++ b/debian/libhts2.symbols @@ -14,6 +14,7 @@ libhts.so.2 libhts2 #MINVER# bam_aux_update_str@Base 1.4.1 bam_cigar2qlen@Base 1.0 bam_cigar2rlen@Base 1.0 + bam_cigar2rqlens@Base 1.7 bam_construct_seq@Base 1.0 bam_copy1@Base 1.0 bam_destroy1@Base 1.0 @@ -142,10 +143,12 @@ libhts.so.2 libhts2 #MINVER# bcf_sr_set_samples@Base 1.0 bcf_sr_set_targets@Base 1.0 bcf_sr_set_threads@Base 1.4.1 + bcf_sr_sort_add_active@Base 1.7 bcf_sr_sort_destroy@Base 1.4.1 bcf_sr_sort_init@Base 1.4.1 bcf_sr_sort_next@Base 1.4.1 bcf_sr_sort_remove_reader@Base 1.4.1 + bcf_sr_sort_set_active@Base 1.7 bcf_sr_strerror@Base 1.2.1 bcf_subset@Base 1.0 bcf_subset_format@Base 1.0 @@ -326,6 +329,7 @@ libhts.so.2 libhts2 #MINVER# cram_huffman_encode_store@Base 1.0 cram_index_build@Base 1.0 cram_index_free@Base 1.0 + cram_index_last@Base 1.7 cram_index_load@Base 1.0 cram_index_query@Base 1.0 cram_load_reference@Base 1.0 @@ -403,9 +407,12 @@ libhts.so.2 libhts2 #MINVER# hfile_destroy@Base 1.0 hfile_init@Base 1.0 hfile_init_fixed@Base 1.4.1 + hfile_mem_get_buffer@Base 1.7 + hfile_mem_steal_buffer@Base 1.7 hfile_oflags@Base 1.0 hfile_plugin_init_gcs@Base 1.4.1 hfile_plugin_init_libcurl@Base 1.3.1 + hfile_plugin_init_mem@Base 1.7 hfile_plugin_init_net@Base 1.3 hfile_plugin_init_s3@Base 1.4.1 hfile_set_blksize@Base 1.5 @@ -417,6 +424,7 @@ libhts.so.2 libhts2 #MINVER# hopen@Base 1.0 hopen_htsget_redirect@Base 1.6 hopen_net@Base 1.0 + hopenv_mem@Base 1.7 hpeek@Base 1.0 hputc2@Base 1.0 hputs2@Base 1.0 @@ -454,13 +462,23 @@ libhts.so.2 libhts2 #MINVER# hts_idx_seqnames@Base 1.0 hts_idx_set_meta@Base 1.0 hts_itr_destroy@Base 1.0 + hts_itr_multi_bam@Base 1.7 + hts_itr_multi_cram@Base 1.7 + hts_itr_multi_destroy@Base 1.7 + hts_itr_multi_next@Base 1.7 hts_itr_next@Base 1.0 + hts_itr_off@Base 1.7 hts_itr_query@Base 1.0 hts_itr_querys@Base 1.0 + hts_itr_regions@Base 1.7 + hts_json_alloc_token@Base 1.7 hts_json_fnext@Base 1.4.1 + hts_json_free_token@Base 1.7 hts_json_fskip_value@Base 1.4.1 hts_json_snext@Base 1.4.1 hts_json_sskip_value@Base 1.4.1 + hts_json_token_str@Base 1.7 + hts_json_token_type@Base 1.7 hts_log@Base 1.5 hts_lrand48@Base 1.6 hts_md5_destroy@Base 1.3 @@ -481,6 +499,7 @@ libhts.so.2 libhts2 #MINVER# hts_readlines@Base 1.0 hts_readlist@Base 1.0 hts_realloc_or_die@Base 1.4.1 + hts_reglist_free@Base 1.7 hts_set_cache_size@Base 1.4.1 hts_set_fai_filename@Base 1.0 hts_set_log_level@Base 1.5 @@ -555,20 +574,28 @@ libhts.so.2 libhts2 #MINVER# knet_seek@Base 1.0 kputd@Base 1.4.1 ks_combsort__off@Base 1.0 + ks_combsort__off_max@Base 1.7 ks_combsort_uint16_t@Base 1.4.1 ks_heapadjust__off@Base 1.0 + ks_heapadjust__off_max@Base 1.7 ks_heapadjust_uint16_t@Base 1.4.1 ks_heapmake__off@Base 1.0 + ks_heapmake__off_max@Base 1.7 ks_heapmake_uint16_t@Base 1.4.1 ks_heapsort__off@Base 1.0 + ks_heapsort__off_max@Base 1.7 ks_heapsort_uint16_t@Base 1.4.1 ks_introsort__off@Base 1.0 + ks_introsort__off_max@Base 1.7 ks_introsort_uint16_t@Base 1.4.1 ks_ksmall__off@Base 1.0 + ks_ksmall__off_max@Base 1.7 ks_ksmall_uint16_t@Base 1.4.1 ks_mergesort__off@Base 1.0 + ks_mergesort__off_max@Base 1.7 ks_mergesort_uint16_t@Base 1.4.1 ks_shuffle__off@Base 1.0 + ks_shuffle__off_max@Base 1.7 ks_shuffle_uint16_t@Base 1.4.1 ksplit_core@Base 1.0 ksprintf@Base 1.0 @@ -639,6 +666,7 @@ libhts.so.2 libhts2 #MINVER# sam_hdr_add@Base 1.0 sam_hdr_add_PG@Base 1.0 sam_hdr_add_lines@Base 1.0 + sam_hdr_change_HD@Base 1.7 sam_hdr_decr_ref@Base 1.0 sam_hdr_dump@Base 1.0 sam_hdr_dup@Base 1.0 @@ -668,6 +696,7 @@ libhts.so.2 libhts2 #MINVER# sam_index_load@Base 1.0 sam_itr_queryi@Base 1.0 sam_itr_querys@Base 1.0 + sam_itr_regions@Base 1.7 sam_open_mode@Base 1.0 sam_open_mode_opts@Base 1.3 sam_parse1@Base 1.0 View it on GitLab: https://salsa.debian.org/med-team/htslib/compare/ede72ab70551f396c3ae143be79d83a652ed7e17...60702c2523a31f6ae27dc88174332963c59acb55 --- View it on GitLab: https://salsa.debian.org/med-team/htslib/compare/ede72ab70551f396c3ae143be79d83a652ed7e17...60702c2523a31f6ae27dc88174332963c59acb55 You're receiving this email because of your account on salsa.debian.org.
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