Re: [med-svn] [Git][med-team/python-pybedtools][master] Rounded-up self-description of package.

[Steffen Möller]

Hello,

in my attempt to turn "yellow" packages into "green", I came across
pybedtools. Only when I was about to upload I had noticed that this
package was in the distribution before and then removed
(https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=894299).

I am not exactly sure about what the reason for the removal was, but
either way, should we possibly separate such removed packages on our
task list, possibly?

Best,

Steffen

On 6/13/18 10:43 PM, Steffen Möller wrote:
> GitLab
>
>
>   Steffen Möller pushed to branch master at Debian Med /
>   python-pybedtools
>   
>
>
> Commits:
>
>   * *ce993d6f
> 
> *
>
> by Steffen Moeller /at 2018-06-13T22:43:12+02:00/
> Rounded-up self-description of package.
>
>
> 3 changed files:
>
>   * debian/changelog <#9c96da0e9f91d7d8937b69b524702c106258f0d1>
>   * debian/control <#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2>
>   * debian/upstream/metadata <#f5606a935d95a2f20059a7ac1136f47b2edadbf6>
>
>
> Changes:
>
> # *debian/changelog*
> 
>
> 
>
>   1   
> +python-pybedtools (0.7.10-2.1) REMOVED; urgency=medium
>
>   2   
> +
>
>   3   
> +* Removed from unstable and testing, see
>
>   4   
> +https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=894299
>
>   5   
> +
>
>   6   
> +-- Steffen Moeller  Wed, 13 Jun 2018 22:40:23 +0200
>
>   7   
> +
> 1 8   
>  python-pybedtools (0.7.10-2) unstable; urgency=medium
> 2 9   
>  
> 3 10  
>  * Team upload
>
>
> # *debian/control*
> 
>
> 
> 1 1   
>  Source: python-pybedtools
> 2 2   
>  Maintainer: Debian Med Packaging Team
> 
> 3 
>   
> -Uploaders: Michael R. Crusoe 
>
>   3   
> +Uploaders: Michael R. Crusoe ,
>
>   4   
> +Steffen Moeller 
> 4 5   
>  Section: python
> 5 6   
>  Priority: optional
> 6 7   
>  Build-Depends: debhelper (>= 10),
> ...   ... @@ -21,7 +22,7 @@ Build-Depends: debhelper (>= 10),
> 2122  
>  cython,
> 2223  
>  r-base-core,
> 2324  
>  zlib1g-dev
> 24
>   
> -Standards-Version: 4.1.1
>
>   25  
> +Standards-Version: 4.1.4
> 2526  
>  Vcs-Browser:
> https://anonscm.debian.org/cgit/debian-med/python-pybedtools.git
> 2627  
>  Vcs-Git: https://anonscm.debian.org/git/debian-med/python-pybedtools.git
> 2728  
>  Homepage: https://daler.github.io/pybedtools/
>
>
> # *debian/upstream/metadata*
> 
>
> 
> 1 1   
>  Name: pybedtools
> 2 2   
>  Reference:
> 3 
>   
> -- Author: R. K. Dale and B. S. Pedersen and A. R. Quinlan
> 4 
>   
> -Title: "Pybedtools: a flexible Python library for manipulating genomic
> datasets and
> 5 
>   
> -annotations"
> 6 
>   
> -Journal: Bioinformatics
> 7 
>   
> -Publisher: Oxford University Press (OUP)
> 8 
>   
> -Volume: 27
> 9 
>   
> -Number: 24
> 10
>   
> -Pages: 3423-3424
> 11
>   
> -Year: 2011
> 12
>   
> -Month: sep
> 13
>   
> -DOI: 10.1093/bioinformatics/btr539
> 14
>   
> -URL: https://doi.org/10.1093%2Fbioinformatics%2Fbtr539
> 15
>   
> -Type: article
>
>   3   
> +- Author: R. K. Dale and B. S. Pedersen and A. R. Quinlan
>
>   4   
> +Title: >
>
>   5   
> +Pybedtools: a flexible Python library for manipulating genomic
>
>   6   
> +datasets and annotations"
>
>   7   
> +Journal: Bioinformatics
>
>   8   
> +Publisher: Oxford University Press (OUP)
>
>   9   
> +Volume: 27
>
>   10  
> +Number: 24
>
>   11  
> +Pages: 3423-3424
>
>   12  
> +Year: 2011
>
>   13  
> +Month: sep
>
>   14  
> +DOI: 10.1093/bioinformatics/btr539
>
>   15  
> +URL: https://doi.org/10.1093%2Fbioinformatics%2Fbtr539
>
>   16  
> +Type: article
>
>   17  
> +Registry:
>
>   18  
> +- Name: bio.tools
>
>   19  
> +Entry: pybedtools
>
>   20  
> +- Name: SciCrunch
>
>   21  
> +Entry: NA
>
>   22  
> +- Name: OMICtools
>
>   23  
> +Entry: OMICS_09508
>
>
> —
> View 

[med-svn] [Git][med-team/python-pybedtools][master] Rounded-up self-description of package.

[Steffen Möller]

Steffen Möller pushed to branch master at Debian Med / python-pybedtools


Commits:
ce993d6f by Steffen Moeller at 2018-06-13T22:43:12+02:00
Rounded-up self-description of package.

- - - - -


3 changed files:

- debian/changelog
- debian/control
- debian/upstream/metadata


Changes:

=
debian/changelog
=
--- a/debian/changelog
+++ b/debian/changelog
@@ -1,3 +1,10 @@
+python-pybedtools (0.7.10-2.1) REMOVED; urgency=medium
+
+  * Removed from unstable and testing, see
+https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=894299
+
+ -- Steffen Moeller   Wed, 13 Jun 2018 22:40:23 +0200
+
 python-pybedtools (0.7.10-2) unstable; urgency=medium
 
   * Team upload


=
debian/control
=
--- a/debian/control
+++ b/debian/control
@@ -1,6 +1,7 @@
 Source: python-pybedtools
 Maintainer: Debian Med Packaging Team 

-Uploaders: Michael R. Crusoe 
+Uploaders: Michael R. Crusoe ,
+   Steffen Moeller 
 Section: python
 Priority: optional
 Build-Depends: debhelper (>= 10),
@@ -21,7 +22,7 @@ Build-Depends: debhelper (>= 10),
cython,
r-base-core,
zlib1g-dev
-Standards-Version: 4.1.1
+Standards-Version: 4.1.4
 Vcs-Browser: https://anonscm.debian.org/cgit/debian-med/python-pybedtools.git
 Vcs-Git: https://anonscm.debian.org/git/debian-med/python-pybedtools.git
 Homepage: https://daler.github.io/pybedtools/


=
debian/upstream/metadata
=
--- a/debian/upstream/metadata
+++ b/debian/upstream/metadata
@@ -1,15 +1,23 @@
 Name: pybedtools
 Reference:
-- Author: R. K. Dale and B. S. Pedersen and A. R. Quinlan
-  Title: "Pybedtools: a flexible Python library for manipulating genomic 
datasets and
-annotations"
-  Journal: Bioinformatics
-  Publisher: Oxford University Press (OUP)
-  Volume: 27
-  Number: 24
-  Pages: 3423-3424
-  Year: 2011
-  Month: sep
-  DOI: 10.1093/bioinformatics/btr539
-  URL: https://doi.org/10.1093%2Fbioinformatics%2Fbtr539
-  Type: article
+ - Author: R. K. Dale and B. S. Pedersen and A. R. Quinlan
+   Title: >
+Pybedtools: a flexible Python library for manipulating genomic
+datasets and annotations"
+   Journal: Bioinformatics
+   Publisher: Oxford University Press (OUP)
+   Volume: 27
+   Number: 24
+   Pages: 3423-3424
+   Year: 2011
+   Month: sep
+   DOI: 10.1093/bioinformatics/btr539
+   URL: https://doi.org/10.1093%2Fbioinformatics%2Fbtr539
+   Type: article
+Registry:
+ - Name: bio.tools
+   Entry: pybedtools
+ - Name: SciCrunch
+   Entry: NA
+ - Name: OMICtools
+   Entry: OMICS_09508



View it on GitLab: 
https://salsa.debian.org/med-team/python-pybedtools/commit/ce993d6f1af7f4083075c276eaf0e3e4175a36b4

-- 
View it on GitLab: 
https://salsa.debian.org/med-team/python-pybedtools/commit/ce993d6f1af7f4083075c276eaf0e3e4175a36b4
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