Re: December: tophat

2017-12-06 Thread Fabian Klötzl
On 06.12.2017 16:20, Andreas Tille wrote: > Hi Fabian, > > On Wed, Dec 06, 2017 at 03:53:09PM +0100, Fabian Klötzl wrote: >> On 04.12.2017 17:33, Andreas Tille wrote: >>> >>> Thanks to the test suite we now know that the issue is not solved yet: >>> >>> $ sh run-unit-test >> >> That should be

Re: December: tophat

2017-12-06 Thread Andreas Tille
Hi Fabian, On Wed, Dec 06, 2017 at 03:53:09PM +0100, Fabian Klötzl wrote: > On 04.12.2017 17:33, Andreas Tille wrote: > > > > Thanks to the test suite we now know that the issue is not solved yet: > > > > $ sh run-unit-test > > That should be done with my recent commit; The new samtools

Re: December: tophat

2017-12-06 Thread Fabian Klötzl
Hi Andreas, On 04.12.2017 17:33, Andreas Tille wrote: > On Mon, Dec 04, 2017 at 02:09:48PM +0100, Fabian Klötzl wrote: >> I just pushed some changes to build tophat with our version of libbam. >> Not sure if the previously mentioned issue in [1] is fixed; can't test, > > Thanks to the test suite

Re: [Debian-med-packaging] Bug#780816: December: tophat

2017-12-04 Thread Fabian Klötzl
On 04.12.2017 17:33, Andreas Tille wrote: > Thanks to the test suite we now know that the issue is not solved yet: > > $ sh run-unit-test > > [2017-12-04 17:28:54] Beginning TopHat run (v2.1.1) > --- > [2017-12-04 17:28:54] Checking for Bowtie >

Re: December: tophat

2017-12-04 Thread Andreas Tille
Hi Fabian, thanks for working on this. On Mon, Dec 04, 2017 at 02:09:48PM +0100, Fabian Klötzl wrote: > I just pushed some changes to build tophat with our version of libbam. > Not sure if the previously mentioned issue in [1] is fixed; can't test, Thanks to the test suite we now know that the

December: tophat

2017-12-04 Thread Fabian Klötzl
Hi all, I just pushed some changes to build tophat with our version of libbam. Not sure if the previously mentioned issue in [1] is fixed; can't test, because my cowbuild just broke. :( Best, Fabian [1]: https://lists.debian.org/debian-med/2014/10/msg4.html