On Fri, Dec 13, 2019 at 10:10:03PM +0100, Andreas Tille wrote:
> i$ pdb2pqr
> Traceback (most recent call last):
> File "/usr/bin/pdb2pqr", line 52, in
> from main import mainCommand
> File "/usr/share/pdb2pqr/main.py", line 77, in
> import extensions
> File "/usr/share/pdb2pqr/exte
On Fri, Dec 13, 2019 at 10:49:45PM +0500, Andrey Rahmatullin wrote:
> > I think at least this is solved now:
> >
> >
> > https://salsa.debian.org/med-team/pdb2pqr/commit/1f4ee901456641140ef18ca8e91e4701e1175410
>
> Nice catch, "env.Append(LIBS=[python_lib])" where "python_lib = 'python' +
> g
On Fri, Dec 13, 2019 at 03:49:22PM +0100, Andreas Tille wrote:
> > g++ -o pdb2pka/substruct/Algorithms.cpython-37m-x86_64-linux-gnu.so
> > -Wl,-z,relro -Wl,-z,now -shared pdb2pka/substruct/Algorithms.os -L/usr/lib
> > -lpython3.7m -lpython3.7
> > /usr/bin/ld: cannot find -lpython3.7
> > collect2:
On Fri, Dec 13, 2019 at 03:16:32PM +0100, Andreas Tille wrote:
>
> ...
> g++ -o pdb2pka/substruct/Algorithms.cpython-37m-x86_64-linux-gnu.so
> -Wl,-z,relro -Wl,-z,now -shared pdb2pka/substruct/Algorithms.os -L/usr/lib
> -lpython3.7m -lpython3.7
> /usr/bin/ld: cannot find -lpython3.7
> collect2:
On Fri, Dec 13, 2019 at 05:46:42PM +0500, Andrey Rahmatullin wrote:
> >
> > Thanks for that additional hint. I can confirm that I checked whether
> > pkgconfig can be used before I was asking here. But we seem to agree
> > that this is not the case. I admit I have no real clue how to convince
>
On Fri, Dec 13, 2019 at 01:40:34PM +0100, Andreas Tille wrote:
> > > g++ -o pdb2pka/substruct/Algorithms.cpython-37m-x86_64-linux-gnu.so
> > > -Wl,-z,relro -Wl,-z,now -shared pdb2pka/substruct/Algorithms.os
> > > -L/usr/lib -lpython3.7
> > > /usr/bin/ld: cannot find -lpython3.7
> > Actually, it's
Hi Andrey,
On Fri, Dec 13, 2019 at 05:18:45PM +0500, Andrey Rahmatullin wrote:
> On Fri, Dec 13, 2019 at 09:49:47AM +0100, Andreas Tille wrote:
> > g++ -o pdb2pka/substruct/Algorithms.cpython-37m-x86_64-linux-gnu.so
> > -Wl,-z,relro -Wl,-z,now -shared pdb2pka/substruct/Algorithms.os -L/usr/lib
>
On Fri, Dec 13, 2019 at 09:49:47AM +0100, Andreas Tille wrote:
> g++ -o pdb2pka/substruct/Algorithms.cpython-37m-x86_64-linux-gnu.so
> -Wl,-z,relro -Wl,-z,now -shared pdb2pka/substruct/Algorithms.os -L/usr/lib
> -lpython3.7
> /usr/bin/ld: cannot find -lpython3.7
Actually, it's a different problem
On Fri, Dec 13, 2019 at 03:23:19PM +0500, Andrey Rahmatullin wrote:
> On Fri, Dec 13, 2019 at 09:49:47AM +0100, Andreas Tille wrote:
> > So how can I enable proper linking to -lpython3.7 which is obviously not
> > in the library search path (but package libpython3.7 is definitely
> > installed in t
On Fri, Dec 13, 2019 at 09:49:47AM +0100, Andreas Tille wrote:
> So how can I enable proper linking to -lpython3.7 which is obviously not
> in the library search path (but package libpython3.7 is definitely
> installed in the pbuilder chroot).
To link to a library you need to install its -dev packa
Hi Scott,
On Thu, Dec 12, 2019 at 04:34:09PM -0500, Scott Talbert wrote:
> On Thu, 12 Dec 2019, Andreas Tille wrote:
> > mkdir -p /build/pdb2pqr-2.1.1+dfsg/debian/tmp/usr/share/pdb2pqr
> > scons \
> >URL="http://localhost/pdb2pqr/"; \
> >PREFIX="/build/pdb2pqr-2.1.1+dfsg/debian/tmp
On Thu, 12 Dec 2019, Andreas Tille wrote:
That hint was helpful anyway and I get further now. I think now the
problem is to convince scons to install in $(CURDIR)/debian/tmp which
seems to try rather /usr/share/pdb2pqr directly:
Looks like the debian/rules file is specifying /usr/share/pdb2pq
On Thu, Dec 12, 2019 at 03:49:13PM -0500, Scott Talbert wrote:
> >
> > That hint was helpful anyway and I get further now. I think now the
> > problem is to convince scons to install in $(CURDIR)/debian/tmp which
> > seems to try rather /usr/share/pdb2pqr directly:
>
> Looks like the debian/rule
On Thu, 12 Dec 2019, Andreas Tille wrote:
On Thu, 12 Dec 2019, Andreas Tille wrote:
I don't see any Python3 changes in that repository. Did you push your
changes?
Argh, its pushed now.
Anyway, the problem is likely in CopySubAction in site_scons/site_init.py.
On line 111, the file 'source
Hi Scott,
On Thu, Dec 12, 2019 at 11:31:09AM -0500, Scott Talbert wrote:
> On Thu, 12 Dec 2019, Andreas Tille wrote:
>
> I don't see any Python3 changes in that repository. Did you push your
> changes?
Argh, its pushed now.
> Anyway, the problem is likely in CopySubAction in site_scons/site_i
On Thu, 12 Dec 2019, Andreas Tille wrote:
Control: tags -1 help
Hi,
it seems pdb2pqr is orphaned upstream. However, it seems to be worth
keeping inside Debian thus I tried my luck to port it to Python3 in
Git[1]. Unfortunately the build runs into
scons: Building targets ...
CopySu
Control: tags -1 help
Hi,
it seems pdb2pqr is orphaned upstream. However, it seems to be worth
keeping inside Debian thus I tried my luck to port it to Python3 in
Git[1]. Unfortunately the build runs into
scons: Building targets ...
CopySubAction("pdb2pqr.py", "pdb2pqr.py.in")
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