Bug#988228: unblock: golang-testify/1.6.1-2

2021-05-08 Thread Nilesh Patra
) + + -- Nilesh Patra Sat, 08 May 2021 12:25:09 +0800 + golang-testify (1.6.1-1) unstable; urgency=medium * Team upload. diff -Nru golang-testify-1.6.1/debian/patches/do-not-use-race.patch golang-testify-1.6.1/debian/patches/do-not-use-race.patch --- golang-testify-1.6.1/debian/patches/do-not-use

Bug#990621: unblock: python-duckpy/3.1.0-2

2021-07-02 Thread Nilesh Patra
+ * d/examples: Add d/tests/test_duckpy_basic.py as example + * d/control: Add Depends on python3-h2 (Closes: #990620) + + -- Nilesh Patra Sat, 03 Jul 2021 01:37:34 +0530 + python-duckpy (3.1.0-1) unstable; urgency=medium * Team upload. diff -Nru python-duckpy-3.1.0/debian/control python-duckpy

Bug#990731: unblock: virulencefinder/2.0.3+git20190809.dde157a-3

2021-07-05 Thread Nilesh Patra
+git20190809.dde157a/debian/changelog 2021-07-06 00:36:09.0 +0530 @@ -1,3 +1,11 @@ +virulencefinder (2.0.3+git20190809.dde157a-3) unstable; urgency=medium + + * Team Upload. + * d/control: Add Missing Depends on python3-distutils +(Closes: #990728) + + -- Nilesh Patra Tue, 06 Jul 2021 00:36

Bug#990730: unblock: resfinder/3.2-3

2021-07-05 Thread Nilesh Patra
. + * d/control: Add Missing Depends on python3-distutils +(Closes: #990726) + * d/p/fix_syntaxwarning.patch: Fix syntax warning for +literal comparison + + -- Nilesh Patra Tue, 06 Jul 2021 00:05:05 +0530 + resfinder (3.2-2) unstable; urgency=medium [ Nilesh Patra ] diff -Nru

Bug#985276: unblock: fsm-lite/1.0-5

2021-03-15 Thread Nilesh Patra
Package: release.debian.org Severity: normal User: release.debian@packages.debian.org Usertags: unblock X-Debbugs-Cc: nil...@debian.org, debian-med-packag...@lists.alioth.debian.org Please unblock package fsm-lite (Please provide enough (but not too much) information to help the release team

Bug#993809: bullseye-pu: package segemehl/0.3.4-3+deb11u1 (Pre-approval)

2021-09-06 Thread Nilesh Patra
est segaults on !amd64 and !i386 ++ Change the signed-ness for needed chars to fix segfault + * Add autopkgtests + + -- Nilesh Patra Mon, 06 Sep 2021 23:46:30 +0530 + segemehl (0.3.4-3) unstable; urgency=medium * Team Upload. diff -Nru segemehl-0.3.4/debian/examples segemehl-0.3.4/deb

Bug#991919: transition: r-api-bioc-3.13

2021-09-11 Thread Nilesh Patra
changes that rendered the file unusable to for analysis. To me, it does not appear high priority. > I would love if somebody could find a fix - may be by discussing > with upstream. No time, sorry :) Cheers, -- Nilesh Patra Debian Developer, Uploading ⢀⣴⠾⠻⢶⣦⠀ ⣾⠁⢠⠒⠀⣿⡁ ⢿⡄⠘⠷⠚⠋

Bug#991841: unblock: perm/0.4.0-6

2021-08-02 Thread Nilesh Patra
test data as example + * d/docs: Install d/README.* and d/tests/run-unit-test +as documents + * d/p/hardening.patch: Add CPPFLAGS which helped detect +buffer overflow + * d/copyright: Test data has been written by Shruti, mentioning +them in copyright for the same + + [ Nilesh Patra

Bug#991841: unblock: perm/0.4.0-6

2021-08-03 Thread Nilesh Patra
00 +0530 +++ perm-0.4.0/debian/changelog 2021-08-03 13:17:48.0 +0530 @@ -1,3 +1,31 @@ +perm (0.4.0-7) unstable; urgency=medium + + * Team Upload. + * d/p/fix-buffer-overflow.patch: Do not reduce buffer size by 1 + + -- Nilesh Patra Tue, 03 Aug 2021 13:17:48 +0530 + +perm (0.4.0-6) unstable

Bug#991749: unblock: ruby-maven-libs/3.3.9+ds-2

2021-08-03 Thread Nilesh Patra
10 to 12 for bullseye release + + -- Nilesh Patra Tue, 03 Aug 2021 22:02:31 +0530 + ruby-maven-libs (3.3.9+ds-2) unstable; urgency=medium * Team upload. diff -Nru ruby-maven-libs-3.3.9+ds/debian/compat ruby-maven-libs-3.3.9+ds/debian/compat --- ruby-maven-libs-3.3.9+ds/debian/compat 1970-0

Bug#998057: transition: r-api-bioc-3.14

2021-12-01 Thread Nilesh Patra
On 24 November 2021 12:37:49 am IST, Sebastian Ramacher wrote: >Control: tags -1 = confirmed > >On 2021-11-23 23:32:46, Nilesh Patra wrote: >> Hi Sebastian, >> >> On Sun, 7 Nov 2021 17:46:56 +0100 Sebastian Ramacher >> wrote: >> > >

Bug#993809: bullseye-pu: package segemehl/0.3.4-3+deb11u1 (Pre-approval)

2021-12-03 Thread Nilesh Patra
On 3 December 2021 9:41:48 pm IST, Julien Cristau wrote: >On Tue, Sep 07, 2021 at 12:27:05AM +0530, Nilesh Patra wrote: >> diff -Nru segemehl-0.3.4/debian/patches/arm64.patch >> segemehl-0.3.4/debian/patches/arm64.patch >> --- segemehl-0.3.4/debian/patches/arm64.patch

Bug#998057: transition: r-api-bioc-3.14

2021-11-23 Thread Nilesh Patra
Hi Sebastian, On Sun, 7 Nov 2021 17:46:56 +0100 Sebastian Ramacher wrote: > > Hi, > > Bioconductor 3.14 was released [1]. > > > > [1] https://bioconductor.org/news/bioc_3_14_release/ > > > > Like for previous r-api-bioc transitions, all reverse dependencies > > need a manual upgrade to the

Bug#998057: Bioc-transition has started (Was: Re: Bug#998057: transition: r-api-bioc-3.14)

2021-11-24 Thread Nilesh Patra
On Tue, Nov 23, 2021 at 08:07:49PM +0100, Sebastian Ramacher wrote: > Please go ahead. Thanks a lot. @All, me and Andreas have kick started the transition. Right now, we are at dependency level 2. Should you have free cycles, do not hesitate to chime in. Here is the tracker for $more info[1]

Bug#998057: transition: r-api-bioc-3.14

2021-12-01 Thread Nilesh Patra
On 1 December 2021 9:36:00 pm IST, Andreas Tille wrote: >Hi Graham, > >Am Wed, Dec 01, 2021 at 01:33:15PM +0200 schrieb Graham Inggs: >> On Wed, 1 Dec 2021 at 13:03, Nilesh Patra wrote: >> > One i386 autopkgtest failure for r-bioc-biocparallel is stalling the >>

Bug#998057: transition: r-api-bioc-3.14

2021-12-01 Thread Nilesh Patra
On 1 December 2021 11:01:12 pm IST, Andreas Tille wrote: >But this is set[3]. If not Salsa-CI should fail. You are testing it on a different version than in testing that's why it passes. If you want to validate, trigger CI on the upload commit for 0.12.1-4 >Moreover, the issue >is not

Bug#998057: transition: r-api-bioc-3.14

2021-12-01 Thread Nilesh Patra
Hi Graham, On 12/2/21 2:48 AM, Graham Inggs wrote: I've already added hints marking r-bioc-biocparallel/1.28.2-2 urgent and gffread/0.12.1-4 as a bad test, so please do let us know if there are others. Yes, I could spot some more. Please set these to ignore, or Let me know if I should rather

Bug#991470: unblock: q2-sample-classifier/2020.11.1-2

2021-07-24 Thread Nilesh Patra
build time tests with || true +rather just print the message that this will be dealt +with in autopkgtests + + -- Nilesh Patra Sun, 25 Jul 2021 10:36:56 +0530 + q2-sample-classifier (2020.11.1-1) unstable; urgency=medium * Team upload. diff -Nru q2-sample-classifier-2020.11.1/debian

Bug#991470: unblock: q2-sample-classifier/2020.11.1-2

2021-07-25 Thread Nilesh Patra
control: retitle -1 q2-sample-classifier/2020.11.1-3 On Sun, 25 Jul 2021 10:58:22 +0530 Nilesh Patra wrote: > [...] Unfortunately, autopkgtests were failing on arm64 and ppc64el for this release owing to floating point errors I've fixed this, and uploaded a new release. Attaching debd

Bug#991508: unblock: samtools-legacy/0.1.19+dfsg-2

2021-07-26 Thread Nilesh Patra
2020-11-16 23:20:39.0 +0530 +++ samtools-legacy-0.1.19+dfsg/debian/changelog2021-07-25 20:41:17.0 +0530 @@ -1,3 +1,11 @@ +samtools-legacy (0.1.19+dfsg-2) unstable; urgency=medium + + * Team Upload. + * Add Depends on zlib1g-dev + * Add autopkgtests + + -- Nilesh Patra

Bug#1010422: Britney fails to pin complete set in "Provides" api transitions [Was: Bug#1010422: transition: r-api-bioc-3.15]

2022-05-19 Thread Nilesh Patra
Hi, On 19 May 2022 1:10:23 pm IST, Paul Gevers wrote: >Package: release.debian.org >User: release.debian@packages.debian.org >Usertag: britney > >Hi, > >On 11-05-2022 12:34, Graham Inggs wrote: >> Yes, please go ahead. >> >> Tracker is at: >>

Bug#1010422: Britney fails to pin complete set in "Provides" api transitions [Was: Bug#1010422: transition: r-api-bioc-3.15]

2022-05-19 Thread Nilesh Patra
On 19 May 2022 2:25:23 pm IST, Andreas Tille wrote: >Am Thu, May 19, 2022 at 01:41:12PM +0530 schrieb Nilesh Patra: >> >> I think we can workaround these anyway by editing the DESCRIPTION file -- >> maybe I'll do so and upload either late in the night today or early mor

Bug#1010422: Bug#1011265: Britney fails to pin complete set in "Provides" api transitions [Was: Bug#1010422: transition: r-api-bioc-3.15]

2022-05-20 Thread Nilesh Patra
Hi Graham, I did some work to cleanup the rest stuff meanwhile, and need your help to ignore some of the CI temporarily to complete the migration; and also because unstable counterparts pass. I have pasted a list at the end of this email, please see to it. -- Best, Nilesh Package

Bug#995636: transition: openssl

2022-06-08 Thread Nilesh Patra
Hi, Is there an ETA for this? Asking since openssl is blocking a number of rev-deps from migrating for almost a month by now. -- Best, Nilesh signature.asc Description: PGP signature

Bug#1010422: Bug#1011265: Britney fails to pin complete set in "Provides" api transitions [Was: Bug#1010422: transition: r-api-bioc-3.15]

2022-05-22 Thread Nilesh Patra
On 22 May 2022 7:05:18 pm IST, Andreas Tille wrote: >Hi Graham, > >Am Sun, May 22, 2022 at 09:09:01AM +0200 schrieb Graham Inggs: >> It looks like the only blocker now is waiting for r-bioc-scater [1] to age: >> >> Too young, only 2 of 5 days old >> >> It doesn't get 2-day migration because

Bug#1010422: transition: r-api-bioc-3.15

2022-05-02 Thread Nilesh Patra
On 2 May 2022 11:54:34 am IST, Andreas Tille wrote: >Am Mon, May 02, 2022 at 09:39:25AM +0530 schrieb Nilesh Patra: >> On Sun, 1 May 2022 11:42:07 +0200 =?UTF-8?B?RHlsYW4gQcOvc3Np?= >> wrote: >> > Hi, >> > Bioconductor 3.15 has been released [1]. >>

Bug#1010422: transition: r-api-bioc-3.15

2022-05-01 Thread Nilesh Patra
On Sun, 1 May 2022 11:42:07 +0200 =?UTF-8?B?RHlsYW4gQcOvc3Np?= wrote: > Hi, > Bioconductor 3.15 has been released [1]. Please hold this off until r-base migrates (which should be soon) -- Best, Nilesh signature.asc Description: PGP signature

Bug#1010422: transition: r-api-bioc-3.15

2022-05-06 Thread Nilesh Patra
Control: tags -1 - moreinfo Hi Graham/Andreas, On Tue, May 03, 2022 at 04:04:22PM +0200, Graham Inggs wrote: > On Tue, 3 May 2022 at 15:51, Nilesh Patra wrote: > > I am now trying to get ggplot2 and friends in testing. Please give > > it time until this weekend to migrat

Bug#1010422: transition: r-api-bioc-3.15

2022-05-03 Thread Nilesh Patra
On Tue, May 03, 2022 at 04:04:22PM +0200, Graham Inggs wrote: > Control: tags -1 + moreinfo > > I am now trying to get ggplot2 and friends in testing. Please give > > it time until this weekend to migrate after which I will remove > > my hacks and re-upload. > > Please also look at rmatrix, it is

Bug#1010422: transition: r-api-bioc-3.15

2022-05-11 Thread Nilesh Patra
On 11 May 2022 2:06:08 pm IST, "Dylan Aïssi" wrote: >Hi all, > >> Am Fri, May 06, 2022 at 06:10:52PM +0530 schrieb Nilesh Patra: >> > >> > I have done so, I think we can start the transition. Please consider >> > pushing >> > the

Re: transition: pandas 1.3 -> 1.5

2023-01-06 Thread Nilesh Patra
On 6 January 2023 1:26:05 pm IST, "Rebecca N. Palmer" wrote: >Should this go ahead before the freeze? I think yes if the new dask works, >but am open to disagreement. The version of dask is same since few months. What do you mean by new dask? >skbio #1017574 This has been fixed in latest

Bug#1023731: BioC Transition blocked by new dependencies

2022-11-21 Thread Nilesh Patra
On Mon, Nov 21, 2022 at 06:11:41PM +0100, Andreas Tille wrote: > Hi Adrian and others, > > Am Mon, Nov 21, 2022 at 06:33:52PM +0200 schrieb Adrian Bunk: > > > This is really hard to do, thought. The new packages are needing those > > > packages from the transition. I actually injected two

Bug#1034063: unblock: ruby-maven-libs/3.3.9+ds-4

2023-04-07 Thread Nilesh Patra
Package: release.debian.org Severity: normal User: release.debian@packages.debian.org Usertags: unblock X-Debbugs-Cc: ruby-maven-l...@packages.debian.org Control: affects -1 + src:ruby-maven-libs Please unblock package ruby-maven-libs [ Reason ] Letting this through helps fix RC bug#1033912

Bug#1031134: unblock: python-cogent/2022.10.31a1+dfsg-3

2023-02-12 Thread Nilesh Patra
Package: release.debian.org Severity: normal User: release.debian@packages.debian.org Usertags: unblock X-Debbugs-Cc: python-cog...@packages.debian.org Control: affects -1 + src:python-cogent Please unblock package python-cogent This package was earlier stuck due to numba incompat with

Bug#1031136: unblock: python-pynndescent/0.5.8-2

2023-02-12 Thread Nilesh Patra
Package: release.debian.org Severity: normal User: release.debian@packages.debian.org Usertags: unblock Please unblock package python-pynndescent This package was earlier stuck due to some precision issues on ppc64el. By the time that got sorted, python3.11 came in and one of its

Bug#1040001: Seeking advise how to proceed with the transition / move R stack to testing (Was: Bug#1040001: transition: r-base)

2023-07-06 Thread Nilesh Patra
On Thu, Jul 06, 2023 at 02:24:57PM -0500, Dirk Eddelbuettel wrote: > [...] I understood some of it (not completely, possibly because of lack of background with R extensions), but thanks a lot for taking the time to explain it to me! > So if tibble does this now, it should only affect tibble

Bug#1040001: Seeking advise how to proceed with the transition / move R stack to testing (Was: Bug#1040001: transition: r-base)

2023-07-06 Thread Nilesh Patra
Hi Paul, On Thu, Jul 06, 2023 at 08:28:45PM +0200, Paul Gevers wrote: > On 06-07-2023 19:08, Paul Gevers wrote: > > Yes, we'll take care of that where it looks sane to do so (examples of > > that are r-cran-epi); I'll manually schedule the "combined" tests, such > > that they disappear from the

Bug#1040001: Seeking advise how to proceed with the transition / move R stack to testing (Was: Bug#1040001: transition: r-base)

2023-07-06 Thread Nilesh Patra
On Thu, Jul 06, 2023 at 09:13:46PM +0200, Sébastien Villemot wrote: > > I'm not sure so please explain in more detail. dh-r was designed to put > > the lowest restriction regarding the versions. I remember some > > discussion some time ago that Dirk thought we should put stronger > >

Bug#1040498: Should we consider the transition ready (Was: Bug#1040498: transition: r-bioc-biocgenerics)

2023-07-29 Thread Nilesh Patra
On Sat, Jul 29, 2023 at 07:44:32PM +0200, Paul Gevers wrote: > Well, I didn't check everything yet (hint is at [1]) but at least the > autopkgtest regression in r-bioc-rhdf5filters (see [2] to find that in > unstable it fails too) should really be solved. I've fixed hdf5filters and uploaded to

Bug#1040498: Help for Bioconductor transition needed: using Debian packaged libraries in r-bioc-rhdf5filters

2023-07-22 Thread Nilesh Patra
On Fri, Jul 21, 2023 at 10:35:57AM +0200, Andreas Tille wrote: > I've just pushed r-bioc-rhdf5filters to salsa[1]. We are replacing code > copies of several compression related libs by the Debian equivalents. > Seems upstream added zstd and thus I added libzstd-dev to Build-Depends > and tried to

Bug#1036047: unblock: nlopt/2.7.1-5

2023-05-14 Thread Nilesh Patra
dev only + + -- Nilesh Patra Sun, 14 May 2023 09:35:20 + + nlopt (2.7.1-4) unstable; urgency=medium * Team upload diff -Nru nlopt-2.7.1/debian/libnlopt0.preinst nlopt-2.7.1/debian/libnlopt0.preinst --- nlopt-2.7.1/debian/libnlopt0.preinst1970-01-01 00:00:00.0 + +++ nl

Re: Test suite issues due to new upstream version of r-core in unstable (Was: r-cran-shiny: broken symlink: ...)

2023-05-16 Thread Nilesh Patra
On Tue, May 16, 2023 at 07:25:15PM +0530, Nilesh Patra wrote: > I personally prefer "1" over 2 as it is less noise (and effort). On second thoughts, I think sending it via testing-proposed-updates would be a better thing to do, as this case perfectly fits the problem. It's be same e

Re: Test suite issues due to new upstream version of r-core in unstable (Was: r-cran-shiny: broken symlink: ...)

2023-05-16 Thread Nilesh Patra
On Tue, May 16, 2023 at 09:31:20AM -0500, Dirk Eddelbuettel wrote: > > On 16 May 2023 at 19:49, Nilesh Patra wrote: > | On Tue, May 16, 2023 at 07:25:15PM +0530, Nilesh Patra wrote: > | > I personally prefer "1" over 2 as it is less noise (and effort). > | > | On s

Re: Test suite issues due to new upstream version of r-core in unstable (Was: r-cran-shiny: broken symlink: ...)

2023-05-16 Thread Nilesh Patra
On Tue, May 16, 2023 at 08:26:21AM -0500, Dirk Eddelbuettel wrote: > Note that none of this affects the release. My recommendation is temporarily > suspend the autopkgtest in those affected packages. No, don't do that as they indicate a new r-base being pulled as one of the dependencies (which

Re: Test suite issues due to new upstream version of r-core in unstable (Was: r-cran-shiny: broken symlink: ...)

2023-05-16 Thread Nilesh Patra
Hi On Tue, May 16, 2023 at 03:01:10PM +0200, Andreas Tille wrote: > when fixing bug #1035428 I realised test suite issues with > > r-cran-thematic [1] >-> Error in `svglite_(filename, bg, width, height, pointsize, standalone, > always_valid)`: Graphics API version mismatch > >

Re: Test suite issues due to new upstream version of r-core in unstable (Was: r-cran-shiny: broken symlink: ...)

2023-05-17 Thread Nilesh Patra
On Wed, May 17, 2023 at 08:58:58AM +0200, Andreas Tille wrote: > Am Tue, May 16, 2023 at 07:49:55PM +0530 schrieb Nilesh Patra: > > On Tue, May 16, 2023 at 07:25:15PM +0530, Nilesh Patra wrote: > > > I personally prefer "1" over 2 as it is less noise (and effort). &g

Re: Matrix update triggering need for four rebuilds

2023-11-17 Thread Nilesh Patra
On 17 November 2023 11:34:21 pm IST, Dirk Eddelbuettel wrote: > >On 17 November 2023 at 18:43, Andreas Tille wrote: >| Am Fri, Nov 17, 2023 at 10:12:02AM -0600 schrieb Dirk Eddelbuettel: >| > Leaving >| > >| >r-cran-irlba >| >r-cran-openmx >| > >| > for you (unless you got to it

Re: Matrix update triggering need for four rebuilds

2023-11-17 Thread Nilesh Patra
On 18 November 2023 12:14:37 am IST, Dirk Eddelbuettel wrote: > >On 17 November 2023 at 23:50, Nilesh Patra wrote: >| >| >| On 17 November 2023 11:34:21 pm IST, Dirk Eddelbuettel >wrote: >| > >| >On 17 November 2023 at 18:43, Andreas Tille wrote: >| >

Bug#1070856: bookworm-pu: package riseup-vpn/0.21.11+ds1-5+deb12u1

2024-05-10 Thread Nilesh Patra
package useless otherwise. +At the moment, the current code is unable to identify the +letsencrypt certs. Used a systempool for the same and create +a newcertpool as a fallback. Also added a Depends in d/control +for ca-certificates for the same reason. +(Closes: #1070270) + +