Re: Any clue how to circumvent issues with MPI on autobuilders

On Fri, Sep 14, 2018 at 9:21 AM, Andreas Tille wrote: > Control: tags -1 help > > Hi, > > in the bug log of #906337 the test suite aborts with > > ... > -- > MPI_ABORT was invoked on rank 0 in communicator MPI_COMM_WORLD >

Re: Please categorise your packages for the Debian Science metapackages: fenics/dolfin

On Thu, Jan 5, 2017 at 6:23 PM, Drew Parsons <dpars...@debian.org> wrote: > On Thu, 2017-01-05 at 18:11 +0100, Johannes Ring wrote: >> On Thu, Jan 5, 2017 at 6:03 PM, Drew Parsons <dpars...@debian.org> >> wrote: >> > >> > No worries, thank

Re: Please categorise your packages for the Debian Science metapackages: fenics/dolfin

On Thu, Jan 5, 2017 at 6:03 PM, Drew Parsons <dpars...@debian.org> wrote: > On Thu, 2017-01-05 at 14:13 +0100, Johannes Ring wrote: >> On Thu, Jan 5, 2017 at 6:04 AM, Drew Parsons <dpars...@debian.org> >> wrote: >> > dolfin is the front-end of the FENiCS

Re: Please categorise your packages for the Debian Science metapackages: fenics/dolfin

On Thu, Jan 5, 2017 at 6:04 AM, Drew Parsons wrote: > dolfin is the front-end of the FENiCS system, and I think the fenics > package is now deprecated. Johannes, did you intend to update the > fenics Debian metapackage, or should we remove it from the Debian > archive? I

Re: building petsc 3.7.0: python can't pickle file objects

On Fri, May 13, 2016 at 11:21 AM, Drew Parsons <dpars...@debian.org> wrote: > On Fri, 2016-05-13 at 10:08 +0200, Johannes Ring wrote: >> The build now fails for me with: >> >> /tmp/src/petsc/src/mat/impls/aij/seq/superlu/superlu.c: In function >> ‘PetscErrorCode Ma

Re: building petsc 3.7.0: python can't pickle file objects

On Fri, May 13, 2016 at 3:45 AM, Drew Parsons wrote: > I've created an experimental branch in the petsc repo to start testing > the build of petsc 3.7.0, > https://anonscm.debian.org/git/debian-science/packages/petsc.git > > Using the same configuration we had for petsc 3.6,

Re: SuperLU

On Tue, May 3, 2016 at 10:07 AM, Nico Schlömer wrote: > Does anyone know who is the current maintainer for SuperLU [1] and where to > find the debian repo? The maintainer is Debian Science Maintainers and the debian repo is available in debian-science svn repo:

Re: FEniCS still on SVN?

On Mon, Apr 25, 2016 at 10:43 AM, Drew Parsons <dpars...@debian.org> wrote: > On Mon, 2016-04-25 at 09:27 +0200, Johannes Ring wrote: >> Upstream has moved ufc and uflacs into ffc and ferari, syfi and viper >> are no longer used. >> > > I've now made remov

Re: FEniCS still on SVN?

On Fri, Apr 22, 2016 at 12:01 PM, Mattia Rizzolo wrote: > On Fri, Apr 22, 2016 at 11:47:28AM +0200, Graham Inggs wrote: >> On 22/04/2016 11:39, Nico Schlömer wrote: >> >I was looking for the Dolfin/FEniCS packages this morning and couldn't find >> >them on /git/debian-science

Re: running mpi in sbuild (petsc testing)

I guess this is the same problem I have when building DOLFIN in pbuilder, which I solve by adding "export OMPI_MCA_plm_rsh_agent=/bin/false" in debian/rules. Johannes On Fri, Oct 9, 2015 at 5:24 AM Drew Parsons wrote: > The new packages for PETSc 3.6.2 are all but ready, >

Re: Autopkgtest and MPI code

On Sat, May 23, 2015 at 7:10 PM, Thibaut Paumard thib...@debian.org wrote: What does work on my box is: orterun --mca btl_tcp_if_include lo job This never crashes the machine, but it does not work in a chroot (for lack of a loopback interface, I guess). I get this error message: It works for

Re: pvbatch / openmpi refuses under chroot

Hi Michael, On Thu, Mar 29, 2012 at 12:01 AM, Michael Banck mba...@debian.org wrote: However, I have experienced issues with arm/armel now, e.g. even if I just run /usr/bin/ompi-ps (from openmpi-bin) without arguments in an unstable chroot, the process eats 100% cpu and spins on sched_yield()

Re: ongoing slepc/petsc transition

On Mon, Jan 23, 2012 at 11:49 PM, Adam C Powell IV hazel...@debian.org wrote: Can't speak for the others (dolfin, feel++, gmsh). DOLFIN 1.0.0 works with PETSc/SLEPc 3.2, only minor changes are needed in the Debian files. I can make a new upload soon. Johannes -- To UNSUBSCRIBE, email to

Re: trilinos debian package

/libtrilinos_kokkos.so.10.4.0 ../../teuchos/src/libtrilinos_teuchos.so.10.4.0 -llapack -lblas ../../ThreadPool/src/libtrilinos_tpi.so.10.4.0 /usr/bin/ld: cannot find -ltpetra This should be fixed now. Johannes Best regards C. On Fri, Aug 13, 2010 at 4:48 PM, Johannes Ring joha...@simula.no wrote

Re: trilinos debian package

Hi Christophe, On Fri, Aug 13, 2010 at 1:43 PM, Christophe Prud'homme prudh...@debian.org wrote: Hi Johannes, I nmoved the trilinos package from Debian pkg-scicomp to Debian Science and updated accordingly the control fields We are behind on the trilinos package, could you update the patch

Re: trilinos debian package

...@debian.org wrote: On Fri, Aug 13, 2010 at 2:04 PM, Johannes Ring joha...@simula.no wrote: BTW, the latest Trilinos release is 10.4.0 while in the Debian changelog we have 10.2.0. I guess we should still go for 10.4.0, right? yes :) thanks a lot ! again I moved trilinos to Debian science svn

vmtk upload

Hello, On Friday last week a new upstream release of vmtk was made (0.9.0) and I have made the necessary adjustments in the Debian packaging. It's available in the Debian Science svn repository [1]. Could someone please upload this package for me? Christophe? Sylvestre? Note that I have set the

Re: RFH: petsc

Hi Adam, On Wed, Jul 7, 2010 at 5:51 PM, Adam C Powell IV hazel...@debian.org wrote: Hello, I'm having two problems with PETSc, and need some help. First is the HPPA issue (below), for which I just supplied a list of arches for binary packages which includes everything but HPPA.  But

RFS: vmtk

because it links against non-free software (Tetgen). The upstream tarball also includes files from Tetgen. This has been discussed with upstream. I would appreciate it very much if someone uploaded this package for me. Kind regards, Johannes Ring PS: It would be nice if the DM-Upload-Allowed: yes

Re: RFS: vmtk

with this: http://packages.simula.no/pool/main/v/vmtk/vmtk_0.9~bzr276-1.dsc ? Best regards, Johannes Best regards C. On Fri, Jun 4, 2010 at 10:23 AM, Johannes Ring joha...@simula.no wrote: Dear mentors, debian-science, I am looking for a sponsor for my package vmtk. * Package name: vmtk

Re: RFS: vmtk

somehow forgot. Sorry about that. I see that you didn't add the DM-Upload-Allowed flag in debian/control. It would be great if I could upload after it is accepted the first time. What do you think? Best regards, Johannes Best regards C. On Fri, Jun 4, 2010 at 12:24 PM, Johannes Ring joha

Re: RFS: vmtk

On Fri, Jun 4, 2010 at 1:28 PM, Christophe Prud'homme prudh...@debian.org wrote: Hi Johannes I see that you didn't add the DM-Upload-Allowed flag in debian/control. It would be great if I could upload after it is accepted the first time. What do you think? Fine by me! you are the one

Re: RFS: dolfin

On Tue, Apr 27, 2010 at 6:54 PM, Sylvestre Ledru sylves...@debian.org wrote: Le mardi 27 avril 2010 à 17:36 +0200, Johannes Ring a écrit : Hi, I have made some changes in the dolfin package [1] such that it will end up in the NEW queue on the next upload. Since I'm only a DM, I will need

RFS: instant (updated package)

would be very glad if someone uploaded this package for me. Sylvestre, Steffen, Christophe? Kind regards, Johannes Ring -- To UNSUBSCRIBE, email to debian-science-requ...@lists.debian.org with a subject of unsubscribe. Trouble? Contact listmas...@lists.debian.org Archive: http

Re: RFS: ferari (updated package)

On Sat, Feb 13, 2010 at 4:18 PM, Sylvestre Ledru sylves...@debian.org wrote: Hello, I am looking for a sponsor for the new version 0.2.0-1 of my package ferari. [...] or - svn://svn.debian.org/svn/pkg-scicomp/fenics/ferari/trunk I would be very glad if someone uploaded this package for

RFS: ferari (updated package)

if someone uploaded this package for me. Christophe, Steffen, Sylvestre? Kind regards, Johannes Ring -- To UNSUBSCRIBE, email to debian-science-requ...@lists.debian.org with a subject of unsubscribe. Trouble? Contact listmas...@lists.debian.org

RFS: fenics

Hi Sylvestre, all, On Thursday, January 14, 2010, Sylvestre Ledru sylves...@debian.org wrote: Hello Johannes, Le jeudi 14 janvier 2010 à 13:39 +0100, Johannes Ring a écrit : Dear mentors, debian-science, pkg-scicomp, I am looking for a sponsor for my package fenics. It is a meta-package

RFS: fenics

cp -a ../debian . rm -rf debian/.svn dpkg-buildpackage I would appreciate it very much if someone uploaded this package for me. [0] http://www.fenics.org Kind regards, Johannes Ring -- To UNSUBSCRIBE, email to debian-science-requ...@lists.debian.org with a subject of unsubscribe. Trouble

RFS: fiat (updated package)

/main/f/fiat/ - Source repository: deb-src http://packages.simula.no/ unstable main - dget http://packages.simula.no/pool/main/f/fiat/fiat_0.3.5-1.dsc or - svn+ssh://svn.debian.org/svn/pkg-scicomp/fenics/fiat/trunk I would be glad if someone uploaded this package for me. Kind regards, Johannes

RFS: ufl

Kind regards, Johannes Ring -- To UNSUBSCRIBE, email to debian-science-requ...@lists.debian.org with a subject of unsubscribe. Trouble? Contact listmas...@lists.debian.org

[Fwd: Bug#528633: Acknowledgement (ITP: syfi -- finite element engine based on symbolic mathematics)]

FYI, I've opened an ITP for SyFi (part of FEniCS) for Debian. Best, Johannes Original Message Subject: Bug#528633: Acknowledgement (ITP: syfi -- finite element engine based on symbolic mathematics) From:Debian Bug Tracking System

[Fwd: Bug#524009: Acknowledgement (ITP: ufl -- unified language for form-compilers)]

FYI: I just filed an ITP bug report for the new FEniCS package UFL. Johannes Original Message Subject: Bug#524009: Acknowledgement (ITP: ufl -- unified language for form-compilers) From:Debian Bug Tracking System

ITP: viper -- minimalistic scientific plotter and run-time visualization module

formats o Can be used as standalone plotting application, or used as part of PyDOLFIN A version of the Debian files is already available in the pkg-scicomp Subversion repository. Johannes Ring -- To UNSUBSCRIBE, email to [EMAIL PROTECTED] with a subject of unsubscribe. Trouble? Contact [EMAIL

ITP: fenics -- automation of computational mathematical modeling

, FErari, FFC, FIAT, Instant, Ko, Puffin, SyFi, UFC and Viper. A version of the Debian files is already available in the pkg-scicomp Subversion repository. Johannes Ring -- To UNSUBSCRIBE, email to [EMAIL PROTECTED] with a subject of unsubscribe. Trouble? Contact [EMAIL PROTECTED]

Re: X-Debbugs-CC (was Re: Bug#503265: ITP: fenics -- automation of computational mathematical modeling)

Hi Luca, On Fri, October 24, 2008 12:44, Luca Capello wrote: Hi Joahnnes! Nothing to do with your ITP. On Fri, 24 Oct 2008 08:31:12 +0200, Johannes Ring wrote: Package: wnpp Severity: wishlist X-Debbugs-CC: [EMAIL PROTECTED] If no one has told you yet, instead of directly cc:ing someone

Re: X-Debbugs-CC

On Fri, October 24, 2008 13:09, Luca Capello wrote: Hi Johannes! On Fri, 24 Oct 2008 12:52:55 +0200, Johannes Ring wrote: On Fri, October 24, 2008 12:44, Luca Capello wrote: If no one has told you yet, instead of directly cc:ing someone (being a real person or a mailing list), please use

ITP: ufc -- unified code generation interface for form-compilers

is already available in the pkg-scicomp Subversion repository. Johannes Ring -- To UNSUBSCRIBE, email to [EMAIL PROTECTED] with a subject of unsubscribe. Trouble? Contact [EMAIL PROTECTED]

ITP: fiat -- tabulation of finite element function spaces

Subversion repository. Johannes Ring -- To UNSUBSCRIBE, email to [EMAIL PROTECTED] with a subject of unsubscribe. Trouble? Contact [EMAIL PROTECTED]

ITP: instant -- simple inlining of C / C++ code in Python

is a Python module that allows for instant inlining of C and C++ code in Python. It is a small Python module built on top of SWIG and Distutils. A version of the Debian files is already available in the pkg-scicomp Subversion repository. Johannes Ring -- To UNSUBSCRIBE, email to [EMAIL PROTECTED

ITP: dolfin -- C++/Python library for solving differential equations

Package: wnpp Severity: wishlist X-Debbugs-CC: [EMAIL PROTECTED] Package name: dolfin Version: 0.8.1 Upstream authors: Anders Logg and Garth N. Wells URL: http://www.fenics.org/wiki/DOLFIN License: LGPL Description: C++/Python library for solving differential equations DOLFIN is the C++/Python