Bug#966986: Most likely fixed in sphinx (2.4.3-5)
A smiliar issue was reported for mapproxy in #966979, which was not an issue in mapproxy but in sphinx, and fixed in sphinx (2.4.3-5). I have not tested the build of this package, but the dh_sphinxdoc issue is mostl likely fixed with sphinx (2.4.3-5) as well. Kind Regards, Bas -- GPG Key ID: 4096R/6750F10AE88D4AF1 Fingerprint: 8182 DE41 7056 408D 6146 50D1 6750 F10A E88D 4AF1 -- debian-science-maintainers mailing list debian-science-maintainers@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-science-maintainers
ignition-msgs is marked for autoremoval from testing
ignition-msgs 5.1.0+dfsg-5 is marked for autoremoval from testing on 2020-09-16 It (build-)depends on packages with these RC bugs: 966884: ignition-math: FTBFS: RollingMean.cc:57:15: error: ânumeric_limitsâ is not a member of âstdâ https://bugs.debian.org/966884 This mail is generated by: https://salsa.debian.org/release-team/release-tools/-/blob/master/mailer/mail_autoremovals.pl Autoremoval data is generated by: https://salsa.debian.org/qa/udd/-/blob/master/udd/testing_autoremovals_gatherer.pl -- debian-science-maintainers mailing list debian-science-maintainers@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-science-maintainers
python-hdf5storage is marked for autoremoval from testing
python-hdf5storage 0.1.15-2 is marked for autoremoval from testing on 2020-09-01
It is affected by these RC bugs:
966999: python-hdf5storage: FTBFS: File
"/usr/lib/python3/dist-packages/numpydoc/docscrape.py", line 324, in
_parse_see_also ; raise ParseError("%s is not a item name" % line)
https://bugs.debian.org/966999
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ignition-fuel-tools is marked for autoremoval from testing
ignition-fuel-tools 4.1.0+dfsg-5 is marked for autoremoval from testing on 2020-09-16 It (build-)depends on packages with these RC bugs: 966884: ignition-math: FTBFS: RollingMean.cc:57:15: error: ânumeric_limitsâ is not a member of âstdâ https://bugs.debian.org/966884 This mail is generated by: https://salsa.debian.org/release-team/release-tools/-/blob/master/mailer/mail_autoremovals.pl Autoremoval data is generated by: https://salsa.debian.org/qa/udd/-/blob/master/udd/testing_autoremovals_gatherer.pl -- debian-science-maintainers mailing list debian-science-maintainers@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-science-maintainers
ignition-math is marked for autoremoval from testing
ignition-math 6.4.0+ds-8 is marked for autoremoval from testing on 2020-09-16 It is affected by these RC bugs: 966884: ignition-math: FTBFS: RollingMean.cc:57:15: error: ânumeric_limitsâ is not a member of âstdâ https://bugs.debian.org/966884 This mail is generated by: https://salsa.debian.org/release-team/release-tools/-/blob/master/mailer/mail_autoremovals.pl Autoremoval data is generated by: https://salsa.debian.org/qa/udd/-/blob/master/udd/testing_autoremovals_gatherer.pl -- debian-science-maintainers mailing list debian-science-maintainers@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-science-maintainers
ignition-transport is marked for autoremoval from testing
ignition-transport 8.0.0+dfsg-3 is marked for autoremoval from testing on 2020-09-16 It (build-)depends on packages with these RC bugs: 966884: ignition-math: FTBFS: RollingMean.cc:57:15: error: ânumeric_limitsâ is not a member of âstdâ https://bugs.debian.org/966884 This mail is generated by: https://salsa.debian.org/release-team/release-tools/-/blob/master/mailer/mail_autoremovals.pl Autoremoval data is generated by: https://salsa.debian.org/qa/udd/-/blob/master/udd/testing_autoremovals_gatherer.pl -- debian-science-maintainers mailing list debian-science-maintainers@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-science-maintainers
sdformat is marked for autoremoval from testing
sdformat 9.2.0+dfsg-4 is marked for autoremoval from testing on 2020-09-16 It (build-)depends on packages with these RC bugs: 966884: ignition-math: FTBFS: RollingMean.cc:57:15: error: ânumeric_limitsâ is not a member of âstdâ https://bugs.debian.org/966884 This mail is generated by: https://salsa.debian.org/release-team/release-tools/-/blob/master/mailer/mail_autoremovals.pl Autoremoval data is generated by: https://salsa.debian.org/qa/udd/-/blob/master/udd/testing_autoremovals_gatherer.pl -- debian-science-maintainers mailing list debian-science-maintainers@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-science-maintainers
ignition-common is marked for autoremoval from testing
ignition-common 3.5.0+dfsg1-3 is marked for autoremoval from testing on 2020-09-16 It (build-)depends on packages with these RC bugs: 966884: ignition-math: FTBFS: RollingMean.cc:57:15: error: ânumeric_limitsâ is not a member of âstdâ https://bugs.debian.org/966884 This mail is generated by: https://salsa.debian.org/release-team/release-tools/-/blob/master/mailer/mail_autoremovals.pl Autoremoval data is generated by: https://salsa.debian.org/qa/udd/-/blob/master/udd/testing_autoremovals_gatherer.pl -- debian-science-maintainers mailing list debian-science-maintainers@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-science-maintainers
tpot is marked for autoremoval from testing
tpot 0.11.1+dfsg2-3 is marked for autoremoval from testing on 2020-09-01
It is affected by these RC bugs:
966971: tpot: FTBFS: dh_auto_test: error: pybuild --test --test-nose -i
python{version} -p 3.8 returned exit code 13
https://bugs.debian.org/966971
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gloo is marked for autoremoval from testing
gloo 0.0~git20200408.d6a961a-2 is marked for autoremoval from testing on 2020-09-01 It is affected by these RC bugs: 966931: gloo: FTBFS: dpkg-gensymbols: error: some symbols or patterns disappeared in the symbols file: see diff output below https://bugs.debian.org/966931 This mail is generated by: https://salsa.debian.org/release-team/release-tools/-/blob/master/mailer/mail_autoremovals.pl Autoremoval data is generated by: https://salsa.debian.org/qa/udd/-/blob/master/udd/testing_autoremovals_gatherer.pl -- debian-science-maintainers mailing list debian-science-maintainers@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-science-maintainers
pplpy is marked for autoremoval from testing
pplpy 0.8.4-4 is marked for autoremoval from testing on 2020-08-30 It (build-)depends on packages with these RC bugs: 965001: python-gmpy2: strange version 2.1.0 beta4 fails tests with mpfr4 4.1.0 https://bugs.debian.org/965001 This mail is generated by: https://salsa.debian.org/release-team/release-tools/-/blob/master/mailer/mail_autoremovals.pl Autoremoval data is generated by: https://salsa.debian.org/qa/udd/-/blob/master/udd/testing_autoremovals_gatherer.pl -- debian-science-maintainers mailing list debian-science-maintainers@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-science-maintainers
arduino-mk is marked for autoremoval from testing
arduino-mk 1.5.2-2 is marked for autoremoval from testing on 2020-09-16 It (build-)depends on packages with these RC bugs: 966898: binutils-avr: FTBFS: elf.c:706:35: error: overflow in conversion from âunsigned intâ to âintâ changes value from ânum_group = 4294967295â to â-1â [-Werror=overflow] https://bugs.debian.org/966898 This mail is generated by: https://salsa.debian.org/release-team/release-tools/-/blob/master/mailer/mail_autoremovals.pl Autoremoval data is generated by: https://salsa.debian.org/qa/udd/-/blob/master/udd/testing_autoremovals_gatherer.pl -- debian-science-maintainers mailing list debian-science-maintainers@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-science-maintainers
python-vispy is marked for autoremoval from testing
python-vispy 0.6.4-1 is marked for autoremoval from testing on 2020-09-01 It is affected by these RC bugs: 966986: python-vispy: FTBFS: dh_sphinxdoc: error: debian/python-vispy-doc/usr/share/doc/python-vispy-doc/html/search.html does not load searchindex.js https://bugs.debian.org/966986 This mail is generated by: https://salsa.debian.org/release-team/release-tools/-/blob/master/mailer/mail_autoremovals.pl Autoremoval data is generated by: https://salsa.debian.org/qa/udd/-/blob/master/udd/testing_autoremovals_gatherer.pl -- debian-science-maintainers mailing list debian-science-maintainers@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-science-maintainers
yosys is marked for autoremoval from testing
yosys 0.9-1 is marked for autoremoval from testing on 2020-09-16 It (build-)depends on packages with these RC bugs: 966850: iverilog: FTBFS: parse.cc:299:10: fatal error: parse.hh: No such file or directory https://bugs.debian.org/966850 This mail is generated by: https://salsa.debian.org/release-team/release-tools/-/blob/master/mailer/mail_autoremovals.pl Autoremoval data is generated by: https://salsa.debian.org/qa/udd/-/blob/master/udd/testing_autoremovals_gatherer.pl -- debian-science-maintainers mailing list debian-science-maintainers@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-science-maintainers
pspp is marked for autoremoval from testing
pspp 1.2.0-5 is marked for autoremoval from testing on 2020-09-01 It is affected by these RC bugs: 966858: pspp: FTBFS: ld: src/ui/gui/psppire-widgets.o:./src/ui/gui/widgets.c:174: multiple definition of `align_enum_type'; src/ui/gui/psppire-psppire-dict.o:./src/ui/gui/psppire-dict.c:45: first defined here https://bugs.debian.org/966858 This mail is generated by: https://salsa.debian.org/release-team/release-tools/-/blob/master/mailer/mail_autoremovals.pl Autoremoval data is generated by: https://salsa.debian.org/qa/udd/-/blob/master/udd/testing_autoremovals_gatherer.pl -- debian-science-maintainers mailing list debian-science-maintainers@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-science-maintainers
pynac is marked for autoremoval from testing
pynac 0.7.26-4 is marked for autoremoval from testing on 2020-08-28 It (build-)depends on packages with these RC bugs: 963290: e-antic: FTBFS: ../e-antic/e-antic.h:24:2: error: #error FLINT 2.5.2 or 2.5.3 required https://bugs.debian.org/963290 This mail is generated by: https://salsa.debian.org/release-team/release-tools/-/blob/master/mailer/mail_autoremovals.pl Autoremoval data is generated by: https://salsa.debian.org/qa/udd/-/blob/master/udd/testing_autoremovals_gatherer.pl -- debian-science-maintainers mailing list debian-science-maintainers@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-science-maintainers
singular is marked for autoremoval from testing
singular 1:4.1.1-p2+ds-4 is marked for autoremoval from testing on 2020-08-28 It (build-)depends on packages with these RC bugs: 963290: e-antic: FTBFS: ../e-antic/e-antic.h:24:2: error: #error FLINT 2.5.2 or 2.5.3 required https://bugs.debian.org/963290 This mail is generated by: https://salsa.debian.org/release-team/release-tools/-/blob/master/mailer/mail_autoremovals.pl Autoremoval data is generated by: https://salsa.debian.org/qa/udd/-/blob/master/udd/testing_autoremovals_gatherer.pl -- debian-science-maintainers mailing list debian-science-maintainers@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-science-maintainers
Bug#791676: libmpich-dev 3.4~a2+really3.3.2-2 has broken Fortran due to gfortran-10 specific flags
On 2020-08-11 09:46, Drew Parsons wrote: Thanks Jed. I think you're replying here in response to discussion raised elsewhere. Could you provide a url link if its publicly accessible so we can catch the rest of the context? Oh wait, I'm wrong aren't I? Your reply is to Christian Engwer's question in Debian Bug#791676 (https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=791676) The glitch with mpifort a.f90 and gfortran-10/gfortran-9 might be a temporary problem. We're still in the transition from gcc-9 to gcc-10. "mpifort a.f90" succeeds in debian unstable. The problem here is that the gfortran package is 1.185.1 (defaulting to gcc-9) in debian testing, but 1.188 (gcc-10) in debian unstable. The transition is held up by seqan, which is failing tests (see https://tracker.debian.org/pkg/gcc-defaults) Since our default MPI is OpenMPI, we didn't catch the inconsistency in mpich soon enough. mpich 3.4~a2+really3.3.2-2 was recently built against gcc-10, but its gfortran dependency was not strict and so it migrated into debian testing ahead of gfortran (with the gfortran-10 default). Drew -- debian-science-maintainers mailing list debian-science-maintainers@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-science-maintainers
Bug#791676: libmpich-dev 3.4~a2+really3.3.2-2 has broken Fortran due to gfortran-10 specific flags
Thanks Jed. I think you're replying here in response to discussion raised elsewhere. Could you provide a url link if its publicly accessible so we can catch the rest of the context? Drew On 2020-08-11 06:43, Jed Brown wrote: I'm replying here because I think it's part of this bug, but more severe in practice. It was evidently built with gfortran-10, but depends on gfortran-9, which doesn't recognize these arguments. $ cat > a.f90 program main end ^D $ mpifort a.f90 f95: error: unrecognized command line option ‘-fallow-invalid-boz’ f95: error: unrecognized command line option ‘-fallow-argument-mismatch’; did you mean ‘-Wno-argument-mismatch’? This can be worked around if one has gfortran-10 installed: $ MPICH_CC=gfortran-10 mpifort a.f90 $ $ mpifort -show f95 -O2 -fdebug-prefix-map=/build/mpich-Aiaw9P/mpich-3.4~a2+really3.3.2=. -fstack-protector-strong -fallow-invalid-boz -fallow-argument-mismatch -Wl,-z,relro -I/usr/include/x86_64-linux-gnu/mpich -I/usr/include/x86_64-linux-gnu/mpich -L/usr/lib/x86_64-linux-gnu -lmpichfort -lmpich -- debian-science-maintainers mailing list debian-science-maintainers@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-science-maintainers
Bug#968210: statsmodels: arm* test failures/crashes
Package: python3-statsmodels Version: 0.11.1-4 Severity: serious arm64 fail in TestZeroInflatedModel_probit.test_fit_regularized: https://buildd.debian.org/status/fetch.php?pkg=statsmodels=arm64=0.11.1-4=1597051632=0 https://ci.debian.net/packages/s/statsmodels/testing/arm64/ From the CI results, this started failing with scipy 1.5. It also fails in Ubuntu -proposed. I don't yet know if this is an actual problem for users, or a test that's too strict to be reliable. It hasn't obviously been noticed or fixed upstream, but I haven't actually tested whether upstream is affected. armel test crash: https://buildd.debian.org/status/fetch.php?pkg=statsmodels=armel=0.11.1-4=1597055709=0 This doesn't crash when just that test file is run in statsmodels 0.11.1-3 qemu-armel, but this isn't 100% proof that -4 (rather than a dependency) caused it. -- debian-science-maintainers mailing list debian-science-maintainers@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-science-maintainers
Bug#968208: pandas: TestMoments.test_rolling_quantile_interpolation_options fails on i386 - rounding issue
Package: python3-pandas Version: 0.25.3+dfsg2-4 Severity: serious One test fails on i386 with a 1-in-last-place difference, probably due to different rounding (x87 extra precision?). https://buildd.debian.org/status/fetch.php?pkg=pandas=i386=0.25.3%2Bdfsg2-4=1597048961=0 -- debian-science-maintainers mailing list debian-science-maintainers@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-science-maintainers
Bug#968184: marked as done (autopkgtest is infinitely outputting "ERROR: not valid")
Your message dated Mon, 10 Aug 2020 23:03:35 + with message-id and subject line Bug#968184: fixed in calculix-cgx 2.17+dfsg-2 has caused the Debian Bug report #968184, regarding autopkgtest is infinitely outputting "ERROR: not valid" to be marked as done. This means that you claim that the problem has been dealt with. If this is not the case it is now your responsibility to reopen the Bug report if necessary, and/or fix the problem forthwith. (NB: If you are a system administrator and have no idea what this message is talking about, this may indicate a serious mail system misconfiguration somewhere. Please contact ow...@bugs.debian.org immediately.) -- 968184: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=968184 Debian Bug Tracking System Contact ow...@bugs.debian.org with problems --- Begin Message --- Package: src:calcluix-cgx Version: 2.17+dfsg-1 Severity: normal I just noticed on the Ubuntu autopkgtest runners that our disk had filled up. When investigating the cause, it turns out that calculix-cgx autopkgtest runs of version 2.17+dfsg-1 have been (apparently) infinitely spamming "ERROR:^@ not valid". The biggest such log that I noticed was 37G! It looks like autopkgtest [07:05:15]: test build1: [--- on a Linux machine, nodename autopkgtest, release 5.4.0-42-generic, version #46-Ubuntu SMP Fri Jul 10 00:22:04 UTC 2020, machine ppc64le The HOME was detected:/home/ubuntu parameters:3 arguments:2 send.fbl opened reading file WARNING: Found a 'sys' command (a system call): sys rm -f *.flm *.rad *.msh *.bou *.equ Since a system call can be dangerous You have to chose now between stop (s), continue (c) or enable (e). If you chose 'e' the 'sys' command will be un-locked by creating or extending your personal config file '/home/ubuntu/.cgx' with the un-lock command ALLOW_SYS. You may delete this command from your '.cgx' file to lock the 'sys' command again. Waiting for user input. Please type into the terminal either s,c or e (the terminal has to be the active window!): ERROR:^@ not valid ERROR:^@ not valid ERROR:^@ not valid ... (forever) I've pinged the Debian CI people, will report back & upgrade the severity if they confirm it is happening on Debian too. Cheers, -- Iain Lane [ i...@orangesquash.org.uk ] Debian Developer [ la...@debian.org ] Ubuntu Developer [ la...@ubuntu.com ] --- End Message --- --- Begin Message --- Source: calculix-cgx Source-Version: 2.17+dfsg-2 Done: Kurt Kremitzki We believe that the bug you reported is fixed in the latest version of calculix-cgx, which is due to be installed in the Debian FTP archive. A summary of the changes between this version and the previous one is attached. Thank you for reporting the bug, which will now be closed. If you have further comments please address them to 968...@bugs.debian.org, and the maintainer will reopen the bug report if appropriate. Debian distribution maintenance software pp. Kurt Kremitzki (supplier of updated calculix-cgx package) (This message was generated automatically at their request; if you believe that there is a problem with it please contact the archive administrators by mailing ftpmas...@ftp-master.debian.org) -BEGIN PGP SIGNED MESSAGE- Hash: SHA512 Format: 1.8 Date: Mon, 10 Aug 2020 17:32:48 -0500 Source: calculix-cgx Architecture: source Version: 2.17+dfsg-2 Distribution: unstable Urgency: medium Maintainer: Debian Science Maintainers Changed-By: Kurt Kremitzki Closes: 911041 968184 Changes: calculix-cgx (2.17+dfsg-2) unstable; urgency=medium . * [c122e35] Remove unneeded sys calls from cgx autopkgtest script (Closes: #968184) * [eabd859] Drop patch explicitly setting std=gnu++98 * [9da2645] Add cross-building patch (Closes: #911041) Checksums-Sha1: 84c3ba28c29af0a617973e119924170a4a40d3e3 2281 calculix-cgx_2.17+dfsg-2.dsc 2f7377f4e8ff3cd95a0b92134d3296bf59ae4ed2 19872 calculix-cgx_2.17+dfsg-2.debian.tar.xz f11ff9593ab7bd70990c7d4c81ad9fc92d8b88d0 8295 calculix-cgx_2.17+dfsg-2_source.buildinfo Checksums-Sha256: 93468db13e2f82638a8b861624c7dfa8da86d72ea98d1e1b29943313e4d33b71 2281 calculix-cgx_2.17+dfsg-2.dsc fc7d66a5cd240667f8d5a9f8624a611d784258391d80b444dcb49f7fbaecce72 19872 calculix-cgx_2.17+dfsg-2.debian.tar.xz 123bbb89c098486a594f976014474057921edd92c28f00576f9efcb2fb3f8459 8295 calculix-cgx_2.17+dfsg-2_source.buildinfo Files: 84cf262118adec1bc7d85c9ffadbcbf3 2281 science optional calculix-cgx_2.17+dfsg-2.dsc c0e5305b7a6de961585ed07eec2b5259 19872 science optional calculix-cgx_2.17+dfsg-2.debian.tar.xz b39dec31d570dd930d20bb997f68ea85 8295 science optional calculix-cgx_2.17+dfsg-2_source.buildinfo -BEGIN PGP SIGNATURE- iQJKBAEBCgA0FiEERwo36jwR3bV97u6LA0twKzc+z0UFAl8xz6kWHGtrcmVtaXR6 a2lAZGViaWFuLm9yZwAKCRADS3ArNz7PRYCfD/9VqzwZywlNceuIQijN21p0BBNi
Bug#911041: marked as done (calculix-cgx FTCBFS: hard codes the build architecture compiler g++)
Your message dated Mon, 10 Aug 2020 23:03:35 + with message-id and subject line Bug#911041: fixed in calculix-cgx 2.17+dfsg-2 has caused the Debian Bug report #911041, regarding calculix-cgx FTCBFS: hard codes the build architecture compiler g++ to be marked as done. This means that you claim that the problem has been dealt with. If this is not the case it is now your responsibility to reopen the Bug report if necessary, and/or fix the problem forthwith. (NB: If you are a system administrator and have no idea what this message is talking about, this may indicate a serious mail system misconfiguration somewhere. Please contact ow...@bugs.debian.org immediately.) -- 911041: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=911041 Debian Bug Tracking System Contact ow...@bugs.debian.org with problems --- Begin Message --- Source: calculix-cgx Version: 2.11+dfsg-1 Tags: patch upstream User: helm...@debian.org Usertags: rebootstrap calculix-cgx fails to crossbuild from source, because the upstream Makefile hard codes the build architecture compiler for the final linker invocation. After making it subsitutable (see patch attached), it fails to cross build due to #911040. Please consider applying the attached patch anyway and close this bug when doing so. Helmut --- calculix-cgx-2.11+dfsg.orig/cgx_2.11/src/Makefile +++ calculix-cgx-2.11+dfsg/cgx_2.11/src/Makefile @@ -22,7 +22,7 @@ OUTIL = $(SUTIL:.c=.o) cgx: $(OLIB) $(OUTIL) $(OULIB) - g++ -std=gnu++98 $(OULIB) $(OLIB) $(OUTIL) $(CFLAGS) $(LFLAGS) -o $@ + $(CXX) -std=gnu++98 $(OULIB) $(OLIB) $(OUTIL) $(CFLAGS) $(LFLAGS) -o $@ --- End Message --- --- Begin Message --- Source: calculix-cgx Source-Version: 2.17+dfsg-2 Done: Kurt Kremitzki We believe that the bug you reported is fixed in the latest version of calculix-cgx, which is due to be installed in the Debian FTP archive. A summary of the changes between this version and the previous one is attached. Thank you for reporting the bug, which will now be closed. If you have further comments please address them to 911...@bugs.debian.org, and the maintainer will reopen the bug report if appropriate. Debian distribution maintenance software pp. Kurt Kremitzki (supplier of updated calculix-cgx package) (This message was generated automatically at their request; if you believe that there is a problem with it please contact the archive administrators by mailing ftpmas...@ftp-master.debian.org) -BEGIN PGP SIGNED MESSAGE- Hash: SHA512 Format: 1.8 Date: Mon, 10 Aug 2020 17:32:48 -0500 Source: calculix-cgx Architecture: source Version: 2.17+dfsg-2 Distribution: unstable Urgency: medium Maintainer: Debian Science Maintainers Changed-By: Kurt Kremitzki Closes: 911041 968184 Changes: calculix-cgx (2.17+dfsg-2) unstable; urgency=medium . * [c122e35] Remove unneeded sys calls from cgx autopkgtest script (Closes: #968184) * [eabd859] Drop patch explicitly setting std=gnu++98 * [9da2645] Add cross-building patch (Closes: #911041) Checksums-Sha1: 84c3ba28c29af0a617973e119924170a4a40d3e3 2281 calculix-cgx_2.17+dfsg-2.dsc 2f7377f4e8ff3cd95a0b92134d3296bf59ae4ed2 19872 calculix-cgx_2.17+dfsg-2.debian.tar.xz f11ff9593ab7bd70990c7d4c81ad9fc92d8b88d0 8295 calculix-cgx_2.17+dfsg-2_source.buildinfo Checksums-Sha256: 93468db13e2f82638a8b861624c7dfa8da86d72ea98d1e1b29943313e4d33b71 2281 calculix-cgx_2.17+dfsg-2.dsc fc7d66a5cd240667f8d5a9f8624a611d784258391d80b444dcb49f7fbaecce72 19872 calculix-cgx_2.17+dfsg-2.debian.tar.xz 123bbb89c098486a594f976014474057921edd92c28f00576f9efcb2fb3f8459 8295 calculix-cgx_2.17+dfsg-2_source.buildinfo Files: 84cf262118adec1bc7d85c9ffadbcbf3 2281 science optional calculix-cgx_2.17+dfsg-2.dsc c0e5305b7a6de961585ed07eec2b5259 19872 science optional calculix-cgx_2.17+dfsg-2.debian.tar.xz b39dec31d570dd930d20bb997f68ea85 8295 science optional calculix-cgx_2.17+dfsg-2_source.buildinfo -BEGIN PGP SIGNATURE- iQJKBAEBCgA0FiEERwo36jwR3bV97u6LA0twKzc+z0UFAl8xz6kWHGtrcmVtaXR6 a2lAZGViaWFuLm9yZwAKCRADS3ArNz7PRYCfD/9VqzwZywlNceuIQijN21p0BBNi Nc5wOQSL9uanyr1xyx2ahfO7e7ikshOszb9C5LPyPqTJJcQNnb3CG8DGJvC065OG y8GCG3MUwPVz6Cb6Yxp+uVp5zSdAA19VeSDYu9x0Un8mPrwU75u1526JxRytgrvc rRwMtEAmZNeGjkOR2dqAnnwF58w4GqIvRJxne6OvXmMeGo6Fv8tHP3U0+AUQkNLj 7GNHzNe52h5k1jQG9Oq3AHZtjxLXG6UDpHCCrTOBeObd29oWsx0WX7TeUB38lvAA LzsfLiR0d35IxSK/JzgClOJu0F8ooCFQkNqVBQIIkMnoDt98V4zd+IfnRTzrXlbH JcziwYHY87MDL1lXkq5KMQzjZXgx5a1yyQwiJYgBieEGzfn5F5rujzT7XFMRekma +qti/Gu65NXb3vH9pNvkynlFcQKKmJ5DS0MJO9fg6+/fjv/2Bf2bkK9VfqaA4TD6 6C2PrpBdjXWAWfYMqKcZCqQb5/Vp/KOSkJ+iyK2TQlJ+1bB8KQ/2bkQbTHbCqp8F GTt1wZ9whnltm4eGhSLTKTyZX7BMrD4CltOBu2BjVx8yyXoTzC1UeOGctN2ZcD8j Cwoe7s+zfLjeiRuunRrlzFYwDdU+m7UCbm/T+P5wKLFSs8zNWKSirpJHqLhwt5ly hGDgwpsBcNzqaUdN5w== =9N7P -END PGP SIGNATURE End Message --- -- debian-science-maintainers mailing list debian-science-maintainers@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-science-maintainers
calculix-cgx_2.17+dfsg-2_source.changes ACCEPTED into unstable
Accepted: -BEGIN PGP SIGNED MESSAGE- Hash: SHA512 Format: 1.8 Date: Mon, 10 Aug 2020 17:32:48 -0500 Source: calculix-cgx Architecture: source Version: 2.17+dfsg-2 Distribution: unstable Urgency: medium Maintainer: Debian Science Maintainers Changed-By: Kurt Kremitzki Closes: 911041 968184 Changes: calculix-cgx (2.17+dfsg-2) unstable; urgency=medium . * [c122e35] Remove unneeded sys calls from cgx autopkgtest script (Closes: #968184) * [eabd859] Drop patch explicitly setting std=gnu++98 * [9da2645] Add cross-building patch (Closes: #911041) Checksums-Sha1: 84c3ba28c29af0a617973e119924170a4a40d3e3 2281 calculix-cgx_2.17+dfsg-2.dsc 2f7377f4e8ff3cd95a0b92134d3296bf59ae4ed2 19872 calculix-cgx_2.17+dfsg-2.debian.tar.xz f11ff9593ab7bd70990c7d4c81ad9fc92d8b88d0 8295 calculix-cgx_2.17+dfsg-2_source.buildinfo Checksums-Sha256: 93468db13e2f82638a8b861624c7dfa8da86d72ea98d1e1b29943313e4d33b71 2281 calculix-cgx_2.17+dfsg-2.dsc fc7d66a5cd240667f8d5a9f8624a611d784258391d80b444dcb49f7fbaecce72 19872 calculix-cgx_2.17+dfsg-2.debian.tar.xz 123bbb89c098486a594f976014474057921edd92c28f00576f9efcb2fb3f8459 8295 calculix-cgx_2.17+dfsg-2_source.buildinfo Files: 84cf262118adec1bc7d85c9ffadbcbf3 2281 science optional calculix-cgx_2.17+dfsg-2.dsc c0e5305b7a6de961585ed07eec2b5259 19872 science optional calculix-cgx_2.17+dfsg-2.debian.tar.xz b39dec31d570dd930d20bb997f68ea85 8295 science optional calculix-cgx_2.17+dfsg-2_source.buildinfo -BEGIN PGP SIGNATURE- iQJKBAEBCgA0FiEERwo36jwR3bV97u6LA0twKzc+z0UFAl8xz6kWHGtrcmVtaXR6 a2lAZGViaWFuLm9yZwAKCRADS3ArNz7PRYCfD/9VqzwZywlNceuIQijN21p0BBNi Nc5wOQSL9uanyr1xyx2ahfO7e7ikshOszb9C5LPyPqTJJcQNnb3CG8DGJvC065OG y8GCG3MUwPVz6Cb6Yxp+uVp5zSdAA19VeSDYu9x0Un8mPrwU75u1526JxRytgrvc rRwMtEAmZNeGjkOR2dqAnnwF58w4GqIvRJxne6OvXmMeGo6Fv8tHP3U0+AUQkNLj 7GNHzNe52h5k1jQG9Oq3AHZtjxLXG6UDpHCCrTOBeObd29oWsx0WX7TeUB38lvAA LzsfLiR0d35IxSK/JzgClOJu0F8ooCFQkNqVBQIIkMnoDt98V4zd+IfnRTzrXlbH JcziwYHY87MDL1lXkq5KMQzjZXgx5a1yyQwiJYgBieEGzfn5F5rujzT7XFMRekma +qti/Gu65NXb3vH9pNvkynlFcQKKmJ5DS0MJO9fg6+/fjv/2Bf2bkK9VfqaA4TD6 6C2PrpBdjXWAWfYMqKcZCqQb5/Vp/KOSkJ+iyK2TQlJ+1bB8KQ/2bkQbTHbCqp8F GTt1wZ9whnltm4eGhSLTKTyZX7BMrD4CltOBu2BjVx8yyXoTzC1UeOGctN2ZcD8j Cwoe7s+zfLjeiRuunRrlzFYwDdU+m7UCbm/T+P5wKLFSs8zNWKSirpJHqLhwt5ly hGDgwpsBcNzqaUdN5w== =9N7P -END PGP SIGNATURE- Thank you for your contribution to Debian. -- debian-science-maintainers mailing list debian-science-maintainers@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-science-maintainers
Processing of calculix-cgx_2.17+dfsg-2_source.changes
calculix-cgx_2.17+dfsg-2_source.changes uploaded successfully to localhost along with the files: calculix-cgx_2.17+dfsg-2.dsc calculix-cgx_2.17+dfsg-2.debian.tar.xz calculix-cgx_2.17+dfsg-2_source.buildinfo Greetings, Your Debian queue daemon (running on host usper.debian.org) -- debian-science-maintainers mailing list debian-science-maintainers@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-science-maintainers
Bug#791676: libmpich-dev 3.4~a2+really3.3.2-2 has broken Fortran due to gfortran-10 specific flags
I'm replying here because I think it's part of this bug, but more severe in practice. It was evidently built with gfortran-10, but depends on gfortran-9, which doesn't recognize these arguments. $ cat > a.f90 program main end ^D $ mpifort a.f90 f95: error: unrecognized command line option ‘-fallow-invalid-boz’ f95: error: unrecognized command line option ‘-fallow-argument-mismatch’; did you mean ‘-Wno-argument-mismatch’? This can be worked around if one has gfortran-10 installed: $ MPICH_CC=gfortran-10 mpifort a.f90 $ $ mpifort -show f95 -O2 -fdebug-prefix-map=/build/mpich-Aiaw9P/mpich-3.4~a2+really3.3.2=. -fstack-protector-strong -fallow-invalid-boz -fallow-argument-mismatch -Wl,-z,relro -I/usr/include/x86_64-linux-gnu/mpich -I/usr/include/x86_64-linux-gnu/mpich -L/usr/lib/x86_64-linux-gnu -lmpichfort -lmpich -- debian-science-maintainers mailing list debian-science-maintainers@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-science-maintainers
[bts-link] source package src:fflas-ffpack
# # bts-link upstream status pull for source package src:fflas-ffpack # see http://lists.debian.org/debian-devel-announce/2006/05/msg1.html # https://bts-link-team.pages.debian.net/bts-link/ # user debian-bts-l...@lists.debian.org # remote status report for #967088 (http://bugs.debian.org/967088) # Bug title: fflas-ffpack: FTBFS: dh_auto_test: error: make -j4 check VERBOSE=1 returned exit code 2 # * https://github.com/linbox-team/fflas-ffpack/issues/282 # * remote status changed: (?) -> open usertags 967088 + status-open thanks -- debian-science-maintainers mailing list debian-science-maintainers@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-science-maintainers
[bts-link] source package src:silx
# # bts-link upstream status pull for source package src:silx # see http://lists.debian.org/debian-devel-announce/2006/05/msg1.html # https://bts-link-team.pages.debian.net/bts-link/ # user debian-bts-l...@lists.debian.org # remote status report for #966051 (http://bugs.debian.org/966051) # Bug title: silx: Uses old name of sip module # * https://github.com/silx-kit/silx/issues/3170 # * remote status changed: (?) -> open usertags 966051 + status-open thanks -- debian-science-maintainers mailing list debian-science-maintainers@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-science-maintainers
[bts-link] source package src:tilp2
# # bts-link upstream status pull for source package src:tilp2 # see http://lists.debian.org/debian-devel-announce/2006/05/msg1.html # https://bts-link-team.pages.debian.net/bts-link/ # user debian-bts-l...@lists.debian.org # remote status report for #967775 (http://bugs.debian.org/967775) # Bug title: tilp2: depends on deprecated GTK 2 # * https://github.com/debrouxl/tilp_and_gfm/pull/30 # * remote status changed: (?) -> open usertags 967775 + status-open thanks -- debian-science-maintainers mailing list debian-science-maintainers@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-science-maintainers
Processed: Re: Bug#968184: autopkgtest is infinitely outputting "ERROR: not valid"
Processing control commands: > severity -1 serious Bug #968184 [src:calculix-cgx] autopkgtest is infinitely outputting "ERROR: not valid" Ignoring request to change severity of Bug 968184 to the same value. -- 968184: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=968184 Debian Bug Tracking System Contact ow...@bugs.debian.org with problems -- debian-science-maintainers mailing list debian-science-maintainers@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-science-maintainers
Processed: Re: Bug#968184: autopkgtest is infinitely outputting "ERROR: not valid"
Processing control commands: > severity -1 serious Bug #968184 [src:calculix-cgx] autopkgtest is infinitely outputting "ERROR: not valid" Severity set to 'serious' from 'normal' -- 968184: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=968184 Debian Bug Tracking System Contact ow...@bugs.debian.org with problems -- debian-science-maintainers mailing list debian-science-maintainers@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-science-maintainers
Bug#968184: autopkgtest is infinitely outputting "ERROR: not valid"
Control: severity -1 serious On Mon, Aug 10, 2020 at 11:32:42AM +0100, Iain Lane wrote: > I've pinged the Debian CI people, will report back & upgrade the > severity if they confirm it is happening on Debian too. Yeah, same here https://ci.debian.net/data/autopkgtest/testing/arm64/c/calculix-cgx/6606733/log.gz -- Iain Lane [ i...@orangesquash.org.uk ] Debian Developer [ la...@debian.org ] Ubuntu Developer [ la...@ubuntu.com ] -- debian-science-maintainers mailing list debian-science-maintainers@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-science-maintainers
Processed: your mail
Processing commands for cont...@bugs.debian.org: > reassign 968184 src:calculix-cgx Bug #968184 [src:calcluix-cgx] autopkgtest is infinitely outputting "ERROR: not valid" Warning: Unknown package 'src:calcluix-cgx' Bug reassigned from package 'src:calcluix-cgx' to 'src:calculix-cgx'. No longer marked as found in versions calcluix-cgx/2.17+dfsg-1. Ignoring request to alter fixed versions of bug #968184 to the same values previously set > found 968184 2.17+dfsg-1 Bug #968184 [src:calculix-cgx] autopkgtest is infinitely outputting "ERROR: not valid" Marked as found in versions calculix-cgx/2.17+dfsg-1. > thanks Stopping processing here. Please contact me if you need assistance. -- 968184: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=968184 Debian Bug Tracking System Contact ow...@bugs.debian.org with problems -- debian-science-maintainers mailing list debian-science-maintainers@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-science-maintainers
Processed: Re: calculix-cgx: ftbfs with GCC-10
Processing control commands: > fixed -1 2.17+dfsg-1 Bug #957063 [src:calculix-cgx] calculix-cgx: ftbfs with GCC-10 Marked as fixed in versions calculix-cgx/2.17+dfsg-1. > close -1 Bug #957063 [src:calculix-cgx] calculix-cgx: ftbfs with GCC-10 Marked Bug as done -- 957063: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=957063 Debian Bug Tracking System Contact ow...@bugs.debian.org with problems -- debian-science-maintainers mailing list debian-science-maintainers@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-science-maintainers
Bug#957063: calculix-cgx: ftbfs with GCC-10
control: fixed -1 2.17+dfsg-1
control: close -1
We can consider it "fixed" in the new release
G.
On Fri, 17 Apr 2020 10:57:34 + Matthias Klose wrote:
> Package: src:calculix-cgx
> Version: 2.11+dfsg-1
> Severity: normal
> Tags: sid bullseye
> User: debian-...@lists.debian.org
> Usertags: ftbfs-gcc-10
>
> Please keep this issue open in the bug tracker for the package it
> was filed for. If a fix in another package is required, please
> file a bug for the other package (or clone), and add a block in this
> package. Please keep the issue open until the package can be built in
> a follow-up test rebuild.
>
> The package fails to build in a test rebuild on at least amd64 with
> gcc-10/g++-10, but succeeds to build with gcc-9/g++-9. The
> severity of this report will be raised before the bullseye release,
> so nothing has to be done for the buster release.
>
> The full build log can be found at:
> http://people.debian.org/~doko/logs/gcc10-20200225/calculix-cgx_2.11+dfsg-1_unstable_gcc10.log
> The last lines of the build log are at the end of this report.
>
> To build with GCC 10, either set CC=gcc-10 CXX=g++-10 explicitly,
> or install the gcc, g++, gfortran, ... packages from experimental.
>
> apt-get -t=experimental install g++
>
> Common build failures are new warnings resulting in build failures with
> -Werror turned on, or new/dropped symbols in Debian symbols files.
> For other C/C++ related build failures see the porting guide at
> http://gcc.gnu.org/gcc-10/porting_to.html
>
> [...]
> generateTet.cpp:402:10: warning: deprecated conversion from string constant
> to ‘char*’ [-Wwrite-strings]
> 402 | delSet("+snodSet");
> | ^~
> generateTet.cpp:403:10: warning: deprecated conversion from string constant
> to ‘char*’ [-Wwrite-strings]
> 403 | delSet("+velemSet");
> | ^~~
> generateTet.cpp:404:20: warning: deprecated conversion from string constant
> to ‘char*’ [-Wwrite-strings]
> 404 | snodSet=pre_seta("+snodSet","i",0);
> |^~
> generateTet.cpp:404:31: warning: deprecated conversion from string constant
> to ‘char*’ [-Wwrite-strings]
> 404 | snodSet=pre_seta("+snodSet","i",0);
> | ^~~
> generateTet.cpp:405:18: warning: deprecated conversion from string constant
> to ‘char*’ [-Wwrite-strings]
> 405 | setNr=pre_seta("+velemSet","i",0);
> | ^~~
> generateTet.cpp:405:30: warning: deprecated conversion from string constant
> to ‘char*’ [-Wwrite-strings]
> 405 | setNr=pre_seta("+velemSet","i",0);
> | ^~~
> generateTet.cpp:419:39: warning: deprecated conversion from string constant
> to ‘char*’ [-Wwrite-strings]
> 419 | for(k=0; k<3; k++)
> seta(snodSet,"n",e_enqire[surf[s].elem[i]].nod[k]);
> | ^~~
> generateTet.cpp:439:14: warning: deprecated conversion from string constant
> to ‘char*’ [-Wwrite-strings]
> 439 | { errMsg("ERROR: realloc failure in generateTet\n"); return(0); }
> | ^
> generateTet.cpp:500:19: warning: deprecated conversion from string constant
> to ‘char*’ [-Wwrite-strings]
> 500 | if ( ( readNG( "test.vol", anz_ng, , _ng, _ng,
> NULL)) == -1)
> | ^~
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Bug#957660: [Re] paraview: ftbfs with GCC-10
A fix for compiling paraview 5.7.0-4 with gcc10 can be found in bug #959387 [1], esp. [2]. Ref.: [1] https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=959387 [2] https://git.inf.h-brs.de/jmeng2m/debian-package-paraview/-/commit/35d8cae30d4e9d1c6da980f2b359b428a5beea89 signature.asc Description: OpenPGP digital signature -- debian-science-maintainers mailing list debian-science-maintainers@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-science-maintainers
Bug#959387: [Re] paraview-dev: missing cmake vtk modules in the dev package, cannot use
PPS: Binary packages can be downloaded here: http://home.infcs.de/~jmeng2m/debian-package-paraview/ They were build using my university's GitLab CI instance and the official debian/buildd:sid docker image. CI file: https://git.inf.h-brs.de/jmeng2m/debian-package-paraview/-/blob/gitlab-ci/.gitlab-ci.yml Build log: https://git.inf.h-brs.de/jmeng2m/debian-package-paraview/-/jobs/421 signature.asc Description: OpenPGP digital signature -- debian-science-maintainers mailing list debian-science-maintainers@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-science-maintainers
dolfin_2019.2.0~git20200218.027d9cc-14_source.changes ACCEPTED into unstable
Accepted: -BEGIN PGP SIGNED MESSAGE- Hash: SHA256 Format: 1.8 Date: Mon, 10 Aug 2020 14:52:01 +0800 Source: dolfin Architecture: source Version: 2019.2.0~git20200218.027d9cc-14 Distribution: unstable Urgency: medium Maintainer: Debian Science Team Changed-By: Drew Parsons Changes: dolfin (2019.2.0~git20200218.027d9cc-14) unstable; urgency=medium . * add debian patch test_floating_point.patch to use pytest.approx to test equality of floating point numbers (in geometry/test_point.py) Needed to pass non-intel (arm64, ppc64el) tests. Checksums-Sha1: 1da59ab160b990c030584fc9e568376c2ec243be 3722 dolfin_2019.2.0~git20200218.027d9cc-14.dsc 0beb944288c0b41271e6a6ab165850b7bf8e2535 2508912 dolfin_2019.2.0~git20200218.027d9cc-14.debian.tar.xz Checksums-Sha256: 97095460f4bb823fadd21dfd99a8cc3a4189f7747d630f15291b1d8605efef2c 3722 dolfin_2019.2.0~git20200218.027d9cc-14.dsc 825e708f4a7de0c1fa4a8f6ef84540fe2ce1c6f17dc90663df0721047a34a2ca 2508912 dolfin_2019.2.0~git20200218.027d9cc-14.debian.tar.xz Files: 08e0db33a19e563328e99395b65291cd 3722 math optional dolfin_2019.2.0~git20200218.027d9cc-14.dsc 2f2637eb126c41cdcbe6351aae8525d7 2508912 math optional dolfin_2019.2.0~git20200218.027d9cc-14.debian.tar.xz -BEGIN PGP SIGNATURE- iQIzBAEBCAAdFiEEI8mpPlhYGekSbQo2Vz7x5L1aAfoFAl8w+48ACgkQVz7x5L1a AfqU0BAAtYPYbDqWUrtWvQJUgqyzVlU6rGQVlmbipv97Z0jIKIW9W5TwjHaeOfAA Ae014w1/yqV0GoBxjwNq4/yrCHocT+hulG5r9mUKbv/QteEgcnaa9hNZE7lxBAjw ruIE+HUO47wrHFB0Xx//YQ4d1iSDBJboROq+HLxQB7r16kksld5TMqC2yOMJ7MaH lw/rL9eaDzZMGk8J7vZZX7aN2zE4R5kqCfK95ZyLLDjXbE0nQ8k7htBZNTpbWrY6 Izb3NrqQt8xl1e21LfvU005WbsBKs0cINZlfZFTADlVAqiDaVFuLtQsTdApt8ZLN 6/tz/RYiX4uZ7hvR61+jpeZV1Y3sFkOIlG+BVug7UCjWyl0hBzhNiRcOjVFh6N2w LzKYhdzLiuF+ANhH2iOkzKbWxcHpJJvJPTtPIK1/Ve/ap9tHqjS4hnXHmvhx1qH5 v7RFQMGHqtX5THEdKW13q+joHzTf81T8a1R4SRrBpkzpZISz0kVdXoTVit+1Tufx jbYy64xnYlvfl/dEHr/9wW33RxmnOViOMaC/xhOw8BsLcFxOITfRES/FZsK6D+ZA ye4jHDQQal/J1SNXYA+f+nzCP36RTfAePczHzOnXIFmxVBZ8tzEdp/ueUxuCP0aq xTa/2BWo+/i02CjfYXopiUyt4Zy3V+cos8tIWJOpombKJ/9SgWs= =TS/R -END PGP SIGNATURE- Thank you for your contribution to Debian. -- debian-science-maintainers mailing list debian-science-maintainers@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-science-maintainers
Processing of dolfin_2019.2.0~git20200218.027d9cc-14_source.changes
dolfin_2019.2.0~git20200218.027d9cc-14_source.changes uploaded successfully to localhost along with the files: dolfin_2019.2.0~git20200218.027d9cc-14.dsc dolfin_2019.2.0~git20200218.027d9cc-14.debian.tar.xz Greetings, Your Debian queue daemon (running on host usper.debian.org) -- debian-science-maintainers mailing list debian-science-maintainers@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-science-maintainers
Bug#966393: marked as done (pandas: FTBFS: TypeError: use() got an unexpected keyword argument 'warn')
Your message dated Mon, 10 Aug 2020 07:48:27 +
with message-id
and subject line Bug#966393: fixed in pandas 0.25.3+dfsg2-4
has caused the Debian Bug report #966393,
regarding pandas: FTBFS: TypeError: use() got an unexpected keyword argument
'warn'
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact ow...@bugs.debian.org
immediately.)
--
966393: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=966393
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Source: pandas
Version: 1.0.4+dfsg-1
Severity: serious
Tags: ftbfs
Justification: fails to build from source (but built successfully in the past)
pandas/experimental recently started to FTBFS, probably due to some change
in python or a python module:
ImportError while loading conftest
'/build/pandas-1.0.4+dfsg/debian/tmp/usr/lib/python3/dist-packages/pandas/conftest.py'.
../debian/tmp/usr/lib/python3/dist-packages/pandas/conftest.py:15: in
import pandas.util._test_decorators as td
../debian/tmp/usr/lib/python3/dist-packages/pandas/util/_test_decorators.py:176:
in
_skip_if_no_mpl(), reason="Missing matplotlib dependency"
../debian/tmp/usr/lib/python3/dist-packages/pandas/util/_test_decorators.py:97:
in _skip_if_no_mpl
mod.use("Agg", warn=True)
E TypeError: use() got an unexpected keyword argument 'warn'
Andreas
pandas_1.0.4+dfsg-1.log.gz
Description: application/gzip
--- End Message ---
--- Begin Message ---
Source: pandas
Source-Version: 0.25.3+dfsg2-4
Done: rebecca_pal...@zoho.com (Rebecca N. Palmer)
We believe that the bug you reported is fixed in the latest version of
pandas, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 966...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Rebecca N. Palmer (supplier of updated pandas package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)
-BEGIN PGP SIGNED MESSAGE-
Hash: SHA512
Format: 1.8
Date: Sun, 09 Aug 2020 22:11:25 +0100
Source: pandas
Architecture: source
Version: 0.25.3+dfsg2-4
Distribution: unstable
Urgency: medium
Maintainer: Debian Science Team
Changed-By: Rebecca N. Palmer
Closes: 966393
Changes:
pandas (0.25.3+dfsg2-4) unstable; urgency=medium
.
* Be compatible with matplotlib 3.3. (Closes: #966393)
* Docs: fix broken remote->local Javascript replacement.
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pandas_0.25.3+dfsg2-4_source.buildinfo
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Bug#966712: marked as done (statsmodels: debci tests fail)
Your message dated Mon, 10 Aug 2020 07:48:33 +
with message-id
and subject line Bug#966712: fixed in statsmodels 0.11.1-4
has caused the Debian Bug report #966712,
regarding statsmodels: debci tests fail
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
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Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Source: statsmodels
Severity: normal
Three statsmodels debci tests (autopkgtest) are failing against
scipy 1.5.2:
../../../../usr/lib/python3/dist-packages/statsmodels/base/tests/test_optimize.py::test_full_output_false
FAILED [ 1%]
../../../../usr/lib/python3/dist-packages/statsmodels/base/tests/test_optimize.py::test_full_output
FAILED [ 1%]
../../../../usr/lib/python3/dist-packages/statsmodels/regression/tests/test_rolling.py::test_plot
FAILED [ 30%]
Error traces:
=== FAILURES ===
test_full_output_false
reset_randomstate = None
@pytest.mark.smoke
def test_full_output_false(reset_randomstate):
# newton needs f, score, start, fargs, kwargs
# bfgs needs f, score start, fargs, kwargs
# nm needs ""
# cg ""
# ncg ""
# powell ""
for method in fit_funcs:
func = fit_funcs[method]
if method == "newton":
xopt, retvals = func(dummy_func, dummy_score, [1], (), {},
hess=dummy_hess, full_output=False, disp=0)
else:
xopt, retvals = func(dummy_func, dummy_score, [1], (), {},
full_output=False, disp=0)
assert_(retvals is None)
if method == "powell":
#NOTE: I think I reported this? Might be version/optimize API
# dependent
> assert_(xopt.shape == () and xopt.size == 1)
E AssertionError
/usr/lib/python3/dist-packages/statsmodels/base/tests/test_optimize.py:53:
AssertionError
___ test_full_output ___
reset_randomstate = None
def test_full_output(reset_randomstate):
for method in fit_funcs:
func = fit_funcs[method]
if method == "newton":
xopt, retvals = func(dummy_func, dummy_score, [1], (), {},
hess=dummy_hess, full_output=True, disp=0)
else:
xopt, retvals = func(dummy_func, dummy_score, [1], (), {},
full_output=True, disp=0)
assert_(retvals is not None)
assert_('converged' in retvals)
if method == "powell":
#NOTE: I think I reported this? Might be version/optimize API
# dependent
> assert_(xopt.shape == () and xopt.size == 1)
E AssertionError
/usr/lib/python3/dist-packages/statsmodels/base/tests/test_optimize.py:75:
AssertionError
__ test_plot ___
@pytest.mark.matplotlib
def test_plot():
import matplotlib.pyplot as plt
y, x, w = gen_data(250, 3, True, pandas=True)
fmla = 'y ~ 1 + x0 + x1 + x2'
data = pd.concat([y, x], axis=1)
mod = RollingWLS.from_formula(fmla, window=100, data=data, weights=w)
res = mod.fit()
fig = res.plot_recursive_coefficient()
assert isinstance(fig, plt.Figure)
res.plot_recursive_coefficient(variables=2, alpha=None,
figsize=(30, 7))
res.plot_recursive_coefficient(variables='x0', alpha=None,
figsize=(30, 7))
res.plot_recursive_coefficient(variables=[0, 2], alpha=None,
figsize=(30, 7))
res.plot_recursive_coefficient(variables=['x0'], alpha=None,
figsize=(30, 7))
res.plot_recursive_coefficient(variables=['x0', 'x1', 'x2'], alpha=None,
figsize=(30, 7))
with pytest.raises(ValueError, match='variable x4 is not an integer'):
res.plot_recursive_coefficient(variables='x4')
fig = plt.Figure()
with pytest.warns(UserWarning, match="tight_layout"):
> out = res.plot_recursive_coefficient(fig=fig)
E Failed: DID NOT WARN. No warnings of type (,)
matching ('tight_layout') was emitted. The
statsmodels_0.11.1-4_source.changes ACCEPTED into unstable
Accepted: -BEGIN PGP SIGNED MESSAGE- Hash: SHA512 Format: 1.8 Date: Sun, 09 Aug 2020 22:12:11 +0100 Source: statsmodels Architecture: source Version: 0.11.1-4 Distribution: unstable Urgency: medium Maintainer: Debian Science Maintainers Changed-By: Rebecca N. Palmer Closes: 966712 Changes: statsmodels (0.11.1-4) unstable; urgency=medium . * Tests: ignore changes due to matplotlib 3.3 and scipy 1.5. Closes: #966712. * Bump debhelper compat to 13. * Override Lintian warning from test references. Checksums-Sha1: 760570c50c9a5397ba54675c8fa1db7947b6397a 3542 statsmodels_0.11.1-4.dsc d6249011cd197b8dd92035452e9584626f286723 34468 statsmodels_0.11.1-4.debian.tar.xz 92f9267da6f22a5e12dbdc1154e1271b3ef8346f 5783 statsmodels_0.11.1-4_source.buildinfo Checksums-Sha256: 400bad87f522d1baa7980a720b9faef0354e253e7f16565cb0ddd7b5805c30f0 3542 statsmodels_0.11.1-4.dsc e7b63097d515203698e578faff6ae93c45e0d54ddfb8e451c0bf0a25e5a536e7 34468 statsmodels_0.11.1-4.debian.tar.xz a91da88f5e201b38dd02dfa29329c08ef277bbe539e8f654265fe1875a3fbfb4 5783 statsmodels_0.11.1-4_source.buildinfo Files: c5891b5c69fca5ca7fefd091748a3bb5 3542 python optional statsmodels_0.11.1-4.dsc 189f09fadb756fd524099a88150cc51c 34468 python optional statsmodels_0.11.1-4.debian.tar.xz e3a8a8aa919af6dc1df7e0ee88f39b5b 5783 python optional statsmodels_0.11.1-4_source.buildinfo -BEGIN PGP SIGNATURE- iQJMBAEBCgA2FiEEZ8sxEAXE7b4yF1MI3uUNDVZ+omYFAl8w9T0YHHJlYmVjY2Ff cGFsbWVyQHpvaG8uY29tAAoJEN7lDQ1WfqJmz5YP/i5kTqr9m0THOWQktI7BreyJ ASfmCQk2YdHHFb/PA0XhQF0fpKlOKKurQ6bD6LB7SPpcsv2kxqcaDKjmNNLQ2LZu 5ezeXVdHASnjHclJKUizExW62shRfl0mqHWeQwYcCPjZsdTuJg/gWDO4utA7noj5 48woW4jOLTk9r5YKoclVmcD3X8IuI0BDFaIBxmb1+Sntv9ow6trWEkSX+j+W5D0h ddQBGBX8bB3LlbjRJTydwcMveIkEpTpYKJ7u476oAO6T2rOUM7H3MJ8afVIpITaA Ct2+mn/qVpnTddp/f0bBl0jlWgsMwM6Xaaf1gHB7u2wmof5SZp5N0BAvfg9JcPnS UP1CCw4fuaVcm6CbASaOwSFyYDD/NDGlK0+ClqHU/eu/SqzknAgxubKQNJFpHTq1 QZr61nO0BqzyZPFbrBZEfazz3lQVSwtcNXS5akaRuLcBnNEnhSbQjTuIx+dZG47p E1AdXb0pUWPPXL4oR/WyiFmXsLkJXyu32Raf9ZPA1bavhd2grOFqcOuCltQ3i92n vOAymK3sFIfEcWLRUnpQmMT4xxn01a2xYmolWsCTKIVgAr5gPxD93VyyiiFMOY3Y EFEPnR6RQGwowc7+eBYYsze8SIZ8wDPEKmUoyi4vAcswwF++EFq5nf4WE1+RFV2+ 1L0HjRtd3ltSO/NI39k+ =72Ga -END PGP SIGNATURE- Thank you for your contribution to Debian. -- debian-science-maintainers mailing list debian-science-maintainers@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-science-maintainers
pandas_0.25.3+dfsg2-4_source.changes ACCEPTED into unstable
Accepted: -BEGIN PGP SIGNED MESSAGE- Hash: SHA512 Format: 1.8 Date: Sun, 09 Aug 2020 22:11:25 +0100 Source: pandas Architecture: source Version: 0.25.3+dfsg2-4 Distribution: unstable Urgency: medium Maintainer: Debian Science Team Changed-By: Rebecca N. Palmer Closes: 966393 Changes: pandas (0.25.3+dfsg2-4) unstable; urgency=medium . * Be compatible with matplotlib 3.3. (Closes: #966393) * Docs: fix broken remote->local Javascript replacement. Checksums-Sha1: 2254dd6e8b2663d118947bc60c87db41948523a2 4004 pandas_0.25.3+dfsg2-4.dsc 3761f5055499f2d90a06cbab002f167cf53c636c 76592 pandas_0.25.3+dfsg2-4.debian.tar.xz eab64abb44006b3eb891a23d804b13041b6b0cce 6021 pandas_0.25.3+dfsg2-4_source.buildinfo Checksums-Sha256: 682ed86512bf3acf0d2eb5b8448f22427b75ee1665ed9e9e2fcd5d5512f3b12a 4004 pandas_0.25.3+dfsg2-4.dsc 46228b8134cc3164819a27cf5d9aa1972c7f67c5d6fabd5842a22be1396c42bb 76592 pandas_0.25.3+dfsg2-4.debian.tar.xz 857260e4cb385ba572504ecd0ecc07e3df2b740d3ff1cdfba45a04399ace8602 6021 pandas_0.25.3+dfsg2-4_source.buildinfo Files: ff3b9dcc591edfd7a82a31bf304797ea 4004 python optional pandas_0.25.3+dfsg2-4.dsc 801f537f1a3b43821b98ef1294fbe379 76592 python optional pandas_0.25.3+dfsg2-4.debian.tar.xz 8dfb6a19a85b77b166fd4453c02836d8 6021 python optional pandas_0.25.3+dfsg2-4_source.buildinfo -BEGIN PGP SIGNATURE- iQJMBAEBCgA2FiEEZ8sxEAXE7b4yF1MI3uUNDVZ+omYFAl8w9SsYHHJlYmVjY2Ff cGFsbWVyQHpvaG8uY29tAAoJEN7lDQ1WfqJmSywQAILGp1WBUmhI8RaGDWe0ijhj iyzOJVEVwjDQkIS+oPTykuOS+8Q1QgJ+OCGk0LW1mFHvcsDctW0AGI/ibwnvcr9j Gce0Kzrf8r8lWjUFxWQ5iduDXsAEkTHu9k90XJS7r6MJ6UBd0vY44P6u25aacAje Hzhnh0AT6WSXpOmCAryPK6A2zpB4lX7cXj/rHnUTnEcfLEQByn/z1bEJthSrVDQv Jub4/nX/48mQRk/DJTpmh1hiUSBXNl1y15p2RyAnxWlIK5brupD+keO54WGVKJnf cSO5vA+kM821Z24zUgtBxFV6Tl+qxk6mEo4RgN2uF8RSIdTYFFhZzw0UQqCNO0xx wYLGZwHu3EiDDywIVsxf1vTU6H/j8WOuwYGNZIvmExQyrDlX9QDTFE6Sky7/HNpY 2PSl7+ye8Gre6ofnxOObVWghncpbIHTaiUvCCJEfA6Aag5sdHRb8C0HX7IoKh2In QkThJH4pDJ9cGQI8JwL1B4rIkNLE5dQjnqbEddxG/aGQkIPHfeUpQs4z2czAus+H vlvszbIQuksFVLoUmDR8Rn336OwOgTwwiC4wHVOFWmaepP7mC3eM4ca47qrDWndv C1jm90J7H5nJ3ZW71oKhC7BYn1y4F24wh17HAxXOkKClyu7hpdL/rtE4vn5ett6B TUTtnrWDI0FP2fF5LL7x =Zc9T -END PGP SIGNATURE- Thank you for your contribution to Debian. -- debian-science-maintainers mailing list debian-science-maintainers@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-science-maintainers
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apache-opennlp_1.9.3-1_source.changes ACCEPTED into unstable
Accepted: -BEGIN PGP SIGNED MESSAGE- Hash: SHA512 Format: 1.8 Date: Mon, 10 Aug 2020 01:41:21 -0400 Source: apache-opennlp Architecture: source Version: 1.9.3-1 Distribution: unstable Urgency: medium Maintainer: Debian Science Maintainers Changed-By: Andrius Merkys Changes: apache-opennlp (1.9.3-1) unstable; urgency=medium . * New upstream version 1.9.3 * Simplifying javadoc-set-source.patch. * Adjusting copyright years. Relicensing debian/* under Apache-2.0. * Wrapping and sorting. * Switching to debhelper-compat dependency. Checksums-Sha1: 2e82af9a8ca35506d7aa32b5a7e48ffaf63d0ca8 2648 apache-opennlp_1.9.3-1.dsc 33fde658d24e8c329af2511a8a26bff2dc220424 2430733 apache-opennlp_1.9.3.orig.tar.gz 4a5fe3dd77d48dc31e77ff1b4761ba5fb4f3b76d 833 apache-opennlp_1.9.3.orig.tar.gz.asc 83d3809eb7947bc9ea5b718d445b299368e5d3d5 24320 apache-opennlp_1.9.3-1.debian.tar.xz f70799b71b06f19721b9673fd6b7b7b6c09bc3b6 14441 apache-opennlp_1.9.3-1_source.buildinfo Checksums-Sha256: d84ce561f34c56c0ceea23754b8e9d8438dcf8d285c6831c0bf2781fa50143a0 2648 apache-opennlp_1.9.3-1.dsc 2e3bb94094a782804c0cbe9518786e4cd1ef50193239ef73f682dd6e99f827f3 2430733 apache-opennlp_1.9.3.orig.tar.gz 53b36074df0d82fb2abb8c61cfc72f36674ae4cb92322467835b6baabf12f0f7 833 apache-opennlp_1.9.3.orig.tar.gz.asc b62efbc16cc59b38173639b224fe00c394b1d4a81a3642f6380e808b757415bf 24320 apache-opennlp_1.9.3-1.debian.tar.xz 4f80fdd28d9531b07d6fce308e75088ad59c4a10166dd0a7b670f29dcb9d5321 14441 apache-opennlp_1.9.3-1_source.buildinfo Files: dcdc1e00949c9b6a453d43742e6a24b5 2648 java optional apache-opennlp_1.9.3-1.dsc d216753603d9d7fde6e543d3a6e52681 2430733 java optional apache-opennlp_1.9.3.orig.tar.gz 1d3483cc21c6f856121b42739c993ab0 833 java optional apache-opennlp_1.9.3.orig.tar.gz.asc c3d704406bc574805ffa70ab0a336d76 24320 java optional apache-opennlp_1.9.3-1.debian.tar.xz d20b7478560eddd18a7268cafc11c125 14441 java optional apache-opennlp_1.9.3-1_source.buildinfo -BEGIN PGP SIGNATURE- iQJFBAEBCgAwFiEEdyKS9veshfrgQdQe5fQ/nCc08ocFAl8w4CMSHG1lcmt5c0Bk ZWJpYW4ub3JnAAoJEOX0P5wnNPKH10EP92Yt4txZIflQt1ul0p04r9ohUY0fiMAz ixaqaLemihFM3FyqPMBC8APVs0vaWclyuAniXs1VQEcx5G9UwR8C3/hRkQLbiNi+ RH2vMRqVB6i3a2Y6zko8ZNwoMM7e2ez76bnhpyULABr000wCFJgnBrEqyZFPmnj8 SascOETIYyvmBKhwstJWV2GJPKZwew25IjgMqJ0PJy+nP4CPteK62rUxDTw5KkfT /c5aYweCslVhKUA4t0cdebgci5bTJuXij1RuLZvCp5aP3pf0xdNIHUGYoqjBGMBp 7CV27lBtPrqUYeufSgf1JSaPLsFcJBGq5n5KSnu6O0Lpd5tsLhM4roTUxLeRxSQX 2q71UJNb3gffxpTE7Ce2NZPTG/yO/PXrWhBAZW/fDESOQPF/A0BEnSdobPZebtsk 3KzjHrP3H7a2EbnWrsjYh3gTTYBjjyhelPI63k7cYsh2jimIuBABDrfR+Ya/cM6c BW+JhgLrZZnVIoz9f0U8gH+tMZZnZCWczLAPPDtVuZDxcmFiakhSN8qfxKQTHqd1 MKd1Q2JHUrvlhK/nO8dSYlXmIWyex+QpvuZoa6QMS485XUt3pT27eKsIzRTA5kwx uaCEfsgC9F7GWTmik4gXgpjmD1GOAFPlbHEBBXqfLhX9gLu66ImOb6pSDj5FOsVO EkYYbYu/9ng= =UN7D -END PGP SIGNATURE- Thank you for your contribution to Debian. -- debian-science-maintainers mailing list debian-science-maintainers@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-science-maintainers
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