theano is marked for autoremoval from testing

theano 0.8.2-3 is marked for autoremoval from testing on 2017-01-04 It is affected by these RC bugs: 835531: theano: FTBFS on amd64 (fail of test_csr_correct_output_faster_than_scipy) -- debian-science-maintainers mailing list debian-science-maintainers@lists.alioth.debian.org

lmfit-py is marked for autoremoval from testing

lmfit-py 0.9.5+dfsg-2 is marked for autoremoval from testing on 2017-01-05 It (build-)depends on packages with these RC bugs: 841610: statsmodels: FTBFS: TypeError: cannot sort an Index object in-place, use sort_values instead -- debian-science-maintainers mailing list

ppl is marked for autoremoval from testing

ppl 1:1.2-1 is marked for autoremoval from testing on 2017-01-04 It (build-)depends on packages with these RC bugs: 845030: swi-prolog: configure does not find libssl, builds without OpenSSL support -- debian-science-maintainers mailing list debian-science-maintainers@lists.alioth.debian.org

Bug#838327: marked as done (dune-pdelab: FTBFS in testing (error: cannot convert 'mem_usage_t*' to 'GlobalLU_t*'))

Your message dated Tue, 06 Dec 2016 01:48:39 + with message-id and subject line Bug#838327: fixed in dune-pdelab 2.5.0~20161204gdb53a76-1 has caused the Debian Bug report #838327, regarding dune-pdelab: FTBFS in testing (error: cannot convert

dune-pdelab_2.5.0~20161204gdb53a76-1_multi.changes ACCEPTED into unstable

Accepted: -BEGIN PGP SIGNED MESSAGE- Hash: SHA512 Format: 1.8 Date: Tue, 06 Dec 2016 02:14:16 +0100 Source: dune-pdelab Binary: libdune-pdelab-dev libdune-pdelab-doc Architecture: all amd64 source Version: 2.5.0~20161204gdb53a76-1 Distribution: unstable Urgency: medium Maintainer:

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sagenb_0.13+ds1-1_amd64.changes is NEW

binary:python-sagenb is NEW. binary:python-sagenb is NEW. source:sagenb is NEW. Your package has been put into the NEW queue, which requires manual action from the ftpteam to process. The upload was otherwise valid (it had a good OpenPGP signature and file hashes are valid), so please be patient.

dune-functions_2.5.0~rc2-1_multi.changes ACCEPTED into unstable

Accepted: -BEGIN PGP SIGNED MESSAGE- Hash: SHA512 Format: 1.8 Date: Tue, 06 Dec 2016 00:02:26 +0100 Source: dune-functions Binary: libdune-functions-dev libdune-functions-doc Architecture: all source Version: 2.5.0~rc2-1 Distribution: unstable Urgency: medium Maintainer: Debian Science

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dune-grid_2.5.0~rc2-1_multi.changes ACCEPTED into unstable

Accepted: -BEGIN PGP SIGNED MESSAGE- Hash: SHA512 Format: 1.8 Date: Tue, 06 Dec 2016 00:51:02 +0100 Source: dune-grid Binary: libdune-grid-dev libdune-grid-dbg libdune-grid-doc Architecture: all amd64 source Version: 2.5.0~rc2-1 Distribution: unstable Urgency: medium Maintainer: Debian

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dune-uggrid_2.5.0~rc2-1_multi.changes ACCEPTED into unstable

Accepted: -BEGIN PGP SIGNED MESSAGE- Hash: SHA512 Format: 1.8 Date: Tue, 06 Dec 2016 00:56:05 +0100 Source: dune-uggrid Binary: libdune-uggrid-dev libdune-uggrid-dbg Architecture: amd64 source Version: 2.5.0~rc2-1 Distribution: unstable Urgency: medium Maintainer: Debian Science

dune-geometry_2.5.0~rc2-1_multi.changes ACCEPTED into unstable

Accepted: -BEGIN PGP SIGNED MESSAGE- Hash: SHA512 Format: 1.8 Date: Mon, 05 Dec 2016 23:23:32 +0100 Source: dune-geometry Binary: libdune-geometry-dev libdune-geometry-dbg libdune-geometry-doc Architecture: all amd64 source Version: 2.5.0~rc2-1 Distribution: unstable Urgency: medium

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dune-typetree_2.5.0~rc2-1_multi.changes ACCEPTED into unstable

Accepted: -BEGIN PGP SIGNED MESSAGE- Hash: SHA512 Format: 1.8 Date: Mon, 05 Dec 2016 23:49:21 +0100 Source: dune-typetree Binary: libdune-typetree-dev libdune-typetree-doc Architecture: all source Version: 2.5.0~rc2-1 Distribution: unstable Urgency: medium Maintainer: Debian Science

dune-istl_2.5.0~rc2-1_multi.changes ACCEPTED into unstable

Accepted: -BEGIN PGP SIGNED MESSAGE- Hash: SHA512 Format: 1.8 Date: Mon, 05 Dec 2016 23:29:29 +0100 Source: dune-istl Binary: libdune-istl-dev libdune-istl-doc Architecture: all source Version: 2.5.0~rc2-1 Distribution: unstable Urgency: medium Maintainer: Debian Science Maintainers

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maxima-sage_5.35.1-2_amd64.changes is NEW

binary:maxima-sage is NEW. binary:maxima-sage-doc is NEW. binary:maxima-sage-share is NEW. binary:maxima-sage-doc is NEW. binary:maxima-sage-share is NEW. binary:maxima-sage is NEW. source:maxima-sage is NEW. Your package has been put into the NEW queue, which requires manual action from the

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Bug#847142: marked as done (libdune-common-dev: fails to upgrade from 'sid' - trying to overwrite /usr/include/dune/common/concept.hh)

Your message dated Mon, 05 Dec 2016 23:04:27 + with message-id and subject line Bug#847142: fixed in dune-common 2.5.0~rc2-2 has caused the Debian Bug report #847142, regarding libdune-common-dev: fails to upgrade from 'sid' - trying to overwrite

dune-common_2.5.0~rc2-2_multi.changes ACCEPTED into unstable

Accepted: -BEGIN PGP SIGNED MESSAGE- Hash: SHA512 Format: 1.8 Date: Mon, 05 Dec 2016 23:41:24 +0100 Source: dune-common Binary: libdune-common-dev libdune-common-dbg libdune-common-doc Architecture: all amd64 source Version: 2.5.0~rc2-2 Distribution: unstable Urgency: medium

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Bug#847142: libdune-common-dev: fails to upgrade from 'sid' - trying to overwrite /usr/include/dune/common/concept.hh

Package: libdune-common-dev Version: 2.5.0~rc1-3 Severity: serious User: debian...@lists.debian.org Usertags: piuparts Hi, during a test with piuparts I noticed your package fails to upgrade from 'sid' to 'experimental'. It installed fine in 'sid', then the upgrade to 'experimental' fails

dune-common_2.5.0~rc2-1_multi.changes ACCEPTED into unstable

Accepted: -BEGIN PGP SIGNED MESSAGE- Hash: SHA512 Format: 1.8 Date: Mon, 05 Dec 2016 23:09:55 +0100 Source: dune-common Binary: libdune-common-dev libdune-common-dbg libdune-common-doc Architecture: all amd64 source Version: 2.5.0~rc2-1 Distribution: unstable Urgency: medium

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ceres-solver_1.12.0+dfsg0-1_amd64.changes ACCEPTED into unstable

Accepted: -BEGIN PGP SIGNED MESSAGE- Hash: SHA256 Format: 1.8 Date: Mon, 05 Dec 2016 21:40:28 +0100 Source: ceres-solver Binary: libceres-dev libceres1 ceres-solver-doc Architecture: source all amd64 Version: 1.12.0+dfsg0-1 Distribution: unstable Urgency: medium Maintainer: Debian

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maxima-sage_5.35.1-2_source.changes REJECTED

Source-only uploads to NEW are not allowed. binary:maxima-sage is NEW. binary:maxima-sage-doc is NEW. binary:maxima-sage-share is NEW. source:maxima-sage is NEW. === Please feel free to respond to this email if you don't understand why your files were rejected, or if you upload new files

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Processed: your mail

Processing commands for cont...@bugs.debian.org: > severity 845994 important Bug #845994 [gmsh] Compile with CGNS support Severity set to 'important' from 'normal' > thank you Stopping processing here. Please contact me if you need assistance. -- 845994:

Re: maxima-sage_5.35.1-1_amd64.changes REJECTED

Wow, now it's going super fast with the sage dependencies! :D Many thanks for that! I just uploaded a new maxima-sage package. Best, Tobias On 12/05/2016 07:00 PM, Thorsten Alteholz wrote: > > Hi, > > please mention > maxima-5.35.1/interfaces/emacs/imaxima/breqn097a/* > in your

cimg_1.7.9+dfsg-1_amd64.changes ACCEPTED into unstable

Accepted: -BEGIN PGP SIGNED MESSAGE- Hash: SHA256 Format: 1.8 Date: Mon, 05 Dec 2016 19:45:02 +0100 Source: cimg Binary: cimg-dev cimg-doc cimg-examples Architecture: source all Version: 1.7.9+dfsg-1 Distribution: unstable Urgency: medium Maintainer: Debian Science Team

maxima-sage_5.35.1-2_amd64.changes REJECTED

maxima-sage_5.35.1-2.dsc: Refers to non-existing file 'maxima-sage_5.35.1.orig.tar.gz' Perhaps you need to include the file in your upload? === Please feel free to respond to this email if you don't understand why your files were rejected, or if you upload new files which address our

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sagenb-export_2.0-1_amd64.changes ACCEPTED into unstable, unstable

Accepted: -BEGIN PGP SIGNED MESSAGE- Hash: SHA512 Format: 1.8 Date: Sun, 27 Nov 2016 23:40:32 +0100 Source: sagenb-export Binary: python-sagenb-export python3-sagenb-export Architecture: source all Version: 2.0-1 Distribution: unstable Urgency: medium Maintainer: Debian Science Team

sagenb_0.13+ds1-1_amd64.changes REJECTED

Hi, please mention sagenb-0.13/sagenb/testing/selenium/selenium.py in your debian/coypright. As sagenb/data/jquery/plugins/extendedclick/* just talks about GPL without any version, one can assume GPL-1+. Looking at the date of publishing, it might be reduced to GPL-3+. Mentioning this would

maxima-sage_5.35.1-1_amd64.changes REJECTED

Hi, please mention maxima-5.35.1/interfaces/emacs/imaxima/breqn097a/* in your debian/copyright. Thanks! Thorsten === Please feel free to respond to this email if you don't understand why your files were rejected, or if you upload new files which address our concerns. --

Bug#847110: please disable the "pretty" build, not showing compiler invocations

Package: src:yosys Version: 0.7-2 Please call the build step with PRETTY=0, showing the compiler args by default. You should that that in the build logs warnings as well. -- debian-science-maintainers mailing list debian-science-maintainers@lists.alioth.debian.org

yorick-hdf5 0.8.0-8 MIGRATED to testing

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r-cran-formatr 1.4-1 MIGRATED to testing

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r-cran-lavaan 0.5.22-1 MIGRATED to testing

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slepc 3.7.3+dfsg1-3 MIGRATED to testing

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r-cran-gbm 2.1.1-1 MIGRATED to testing

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r-cran-arm 1.9-3-1 MIGRATED to testing

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r-cran-mime_0.5-1_amd64.changes ACCEPTED into unstable

Accepted: -BEGIN PGP SIGNED MESSAGE- Hash: SHA256 Format: 1.8 Date: Mon, 05 Dec 2016 17:42:33 +0100 Source: r-cran-mime Binary: r-cran-mime Architecture: source amd64 Version: 0.5-1 Distribution: unstable Urgency: medium Maintainer: Debian Science Team

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r-cran-lubridate_1.6.0-1_amd64.changes ACCEPTED into unstable

Accepted: -BEGIN PGP SIGNED MESSAGE- Hash: SHA256 Format: 1.8 Date: Mon, 05 Dec 2016 17:21:22 +0100 Source: r-cran-lubridate Binary: r-cran-lubridate Architecture: source amd64 Version: 1.6.0-1 Distribution: unstable Urgency: medium Maintainer: Debian Science Team

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r-cran-qvcalc 0.9-0-1 MIGRATED to testing

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petsc 3.7.4+dfsg1-7 MIGRATED to testing

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armadillo 1:7.500.2+dfsg-1 MIGRATED to testing

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givaro 4.0.2-5 MIGRATED to testing

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Re: geant321 is marked for autoremoval from testing

Hi, On Fri, Dec 02, 2016 at 04:39:08AM +, Debian testing autoremoval watch wrote: > geant321 1:3.21.14.dfsg-11 is marked for autoremoval from testing on > 2016-12-20 > > It (build-)depends on packages with these RC bugs: > 837657: cernlib: FTBFS with bindnow and PIE enabled > 837711:

Bug#847090: src:simbody: FTBFS on ppc64el

Package: src:simbody Version: 3.5.3+dfsg-1 Severity: normal Tags: patch Dear Maintainer, While trying to build the package on ppc64el, it fails with this message: /«BUILDDIR»/simbody-3.5.3+dfsg/SimTKcommon/src/ParallelExecutor.cpp:174:27: fatal error: windows.h: No such file or directory

conflicts between VTK/XDMF and libloki

I'm the maintainer of xdmf, which I packaged to work with VisIT and related code (in particular CDAT, which uses VISIT). I originally packaged xdmf, recently moving up to xdmf3 as required by VTK 7+. (I plan to submit a patch to VTK later to use the external xdmf rather than its internal copy.)

[no subject]

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r-cran-dynlm_0.3.5-1_amd64.changes is NEW

binary:r-cran-dynlm is NEW. binary:r-cran-dynlm is NEW. source:r-cran-dynlm is NEW. Your package has been put into the NEW queue, which requires manual action from the ftpteam to process. The upload was otherwise valid (it had a good OpenPGP signature and file hashes are valid), so please be

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vtk6_6.3.0+dfsg1-2.1_source.changes ACCEPTED into unstable

Accepted: -BEGIN PGP SIGNED MESSAGE- Hash: SHA512 Format: 1.8 Date: Thu, 01 Dec 2016 11:19:54 + Source: vtk6 Binary: libvtk6-dev libvtk6-qt-dev libvtk6.3 libvtk6.3-qt libvtk6-jni libvtk6-java python-vtk6 tcl-vtk6 vtk6 vtk6-doc vtk6-examples Architecture: source Version: