Bug#877419: pandas FTBFS on !x86/ppc64el: test failures

Hi I refreshed and re-enabled Andreas' mark_tests_working_on_intel.patch [1] which was disabled in 0.22.0-1. I additionally marked test_sum_nanops_timedelta and test_timedelta_ops_with_missing_values with pytest.mark.intel which were failing at least on arm64. To address a new failure on

Bug#892199: r-cran-knitr: autopkgtest failure

Source: r-cran-knitr Version: 1.20-1 User: ubuntu-de...@lists.ubuntu.com Usertags: origin-ubuntu bionic autopkgtest Hi Andreas Since the upload of 1.20-1, r-cran-knitr's autopkgtests have been failing [1]. There are new tests that require r-cran-tinytex which is not yet packaged in Debian.

Bug#891246: ros-metapackages: please adjust dependencies for libgazebo9

Source: ros-metapackages Version: 1.8 Tags: patch Hi Maintainer 9.0.0+dfsg5-2 was recently uploaded to unstable. Please update the dependencies of ros-simulators and ros-simulators-dev for the new gazebo9 packages. I believe the patch below is what is required. Regards Graham @@ -448,7

Bug#890987: sdformat: autopkgtest failure

Source: sdformat Version: 6.0.0+dfsg-3 User: ubuntu-de...@lists.ubuntu.com Usertags: origin-ubuntu bionic autopkgtest Hi Maintainer With the upload of 6.0.0+dfsg-3, sdformat's autopkgtest failed [1] with the following error: autopkgtest [22:16:52]: test build: [---

Accepted artha 1.0.3-3 (source) into unstable

hanged-By: Graham Inggs <gin...@debian.org> Description: artha - Handy off-line thesaurus based on WordNet Closes: 729458 Changes: artha (1.0.3-3) unstable; urgency=medium . * Team upload * Recommend libnotify4 instead of libnotify1 (Closes: #729458) * Fix Vcs-* U

Bug#885569: suitesparse: libgraphblasdemo underlinked

Source: suitesparse Version: 1:5.1.0-1 Tags: patch Hi Sébastien Suitesparse fails to build in Ubuntu where everything is linked with -Wl,--as-needed by default. [ 50%] Linking C executable simple_demo /usr/bin/cmake -E cmake_link_script CMakeFiles/simple_demo.dir/link.txt --verbose=1

Bug#884349: primesieve: autopkgtest failure

Source: primesieve Version: 6.2+ds-1 User: ubuntu-de...@lists.ubuntu.com Usertags: origin-ubuntu bionic autopkgtest Hi Jerome Since the upload of 6.2+ds-1, primesieve's autopkgtests have been failing [1]. Upstream removed the option to run 'primesieve --test' in version 6.0. Regards Graham

Bug#883987: rheolef: FTBFS error: partial specialization ... after instantiation ...

Hi Pierre (cc-ing Andreas in case he is not subscribed) On 12 December 2017 at 15:13, Pierre Saramito wrote: > Hi Andreas, > > This problem do neither comes from Rheolef-6.7 nor from CGAL-4.11: > it comes from Boost-1.62 combined with g++ 7.2 in Debian sid and testing.

Bug#836983: Patch

Hi Frédéric On 7 December 2017 at 19:00, Frédéric Bonnard wrote: > Graham, here is patch attached for the issue. > By default some architectures have "char" being unsigned such as the ones > listed here and others ( https://wiki.debian.org/ArchitectureSpecificsMemo ). > I just

Bug#836983: freecad: autopkgtests fail on arm64, ppc64el, s390x

Control: retitle -1 freecad: autopkgtests fail on arm64, ppc64el, s390x Ubuntu have recently enabled autopkgtests on arm64 [1] which confirms the same "Unit overflow in pow()" failure on arm64. [1] http://autopkgtest.ubuntu.com/packages/f/freecad/bionic/arm64 -- debian-science-maintainers

Bug#883002: r-cran-zelig: autopkgtest failure

Source: r-cran-zelig Version: 5.1.5-1 User: ubuntu-de...@lists.ubuntu.com Usertags: origin-ubuntu bionic autopkgtest Hi Maintainer Since the upload of 5.1.5-1, r-cran-zelig's autopkgtests have been failing [1]. Previous tests failed due to r-cran-zelig not being installable, but otherwise would

Bug#882865: r-cran-coin: autopkgtest failure

Source: r-cran-coin Version: 1.2-1-1 User: ubuntu-de...@lists.ubuntu.com Usertags: origin-ubuntu bionic autopkgtest Hi Maintainer Since the upload of 1.2-1-1, r-cran-coin's autopkgtests have been failing [1]. There is a new test that requires r-cran-libcoin which is not yet packaged. Regards

Bug#836983: arm64 too

Hi Frederic > Just for the record, this bug also happens on arm64. > This seems to be a regression. I'm trying to bisect that. Did you ever make any progress with this? Regards Graham -- debian-science-maintainers mailing list debian-science-maintainers@lists.alioth.debian.org

Bug#881318: dh-r: Please provide a means to update or check Build-Depends

Package: dh-r Severity: wishlist Hi It would be great if there was a way to update or check Build-Depends when updating a package to a new upstream version. Regards Graham -- debian-science-maintainers mailing list debian-science-maintainers@lists.alioth.debian.org

Bug#876509: deal.ii FTBFS with lapack

Control: reassign -1 src:trilinos 12.10.1-4 Control: affects -1 src:deal.ii Control: block -1 by 876958 Hi Anton On 23 September 2017 at 01:23, Anton Gladky wrote: > deal.ii FTBFS in the sid. Probably due to the new upload of lapack. Yes indeed, thanks for picking this up.

Bug#876958: nmu: trilinos_12.10.1-4

Package: release.debian.org Severity: normal User: release.debian@packages.debian.org Usertags: binnmu X-Debbugs-Cc: debian-science-maintainers@lists.alioth.debian.org Dear Release Team Lapack recently switched to multiarch and Trilinos needs to be rebuilt in order to pick up the new

Bug#876411: admesh: autopkgtests fail since 0.98.3-1 upload

Source: admesh Version: 0.98.3-1 Tags: patch User: ubuntu-de...@lists.ubuntu.com Usertags: origin-ubuntu artful autopkgtest Hi Anton ADMesh's autopkgtests have been failing since the 0.98.3-1 upload [1]. Output of the 'regression' test changed because it includes the version. If you are happy

Bug#875618: closed by Sébastien Villemot <sebast...@debian.org> (Bug#875618: fixed in openblas 0.2.20+ds-4)

Thanks Sébastien! I'm sorry it turned out not to be as simple as I originally thought. -- debian-science-maintainers mailing list debian-science-maintainers@lists.alioth.debian.org http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-science-maintainers

Bug#875618: openblas: please enable build on s390x

Source: openblas Version: 0.2.20+ds-1 Severity: wishlist Hi Sébastien From Changelog.txt in OpenBLAS 0.2.20: IBM Z: * New target z13 with BLAS3 optimizations I have just checked, and openblas/0.2.20-3 builds successfully on zelenka.debian.org. Please enable building on s390x. Regards Graham

Bug#868922: r-cran-randomfieldsutils: FTBFS: init_RandomFieldsUtils.cc:62:10: error: 'R_NativeArgStyle' does not name a type

Control: tags -1 - buster r-cran-randomfieldsutils 0.3.15-1 builds fine in testing -- debian-science-maintainers mailing list debian-science-maintainers@lists.alioth.debian.org http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-science-maintainers

Bug#850965: freecad: GNOME Software catalog entry missing

On 8 July 2017 at 00:52, wrote: > The issue is still present although the icons and desktop file seems to be > correct. Any ideas? Probably this: https://wiki.debian.org/AppStream/Guidelines#No_symbolic_links Since the AppStream Generator relies on packages' md5sums file

Bug#856055: NetCDF import broken on amd64

Control: tags -1 + pending Hi Timo Thanks for the bug report, test case and patch! I have confirmed the reported behaviour on amd64 and verified that the patch doesn't break i386. I've committed your patch to git [1], slightly reformatted to minimize the diff. Regards Graham [1]

Bug#870128: libgpuarray: broken autopkgtests

Hi Ghislain Can you test your package with mesa-opencl-icd instead of pocl-opencl-icd? This will allow the test suite to run on more architectures than only amd64 and i386. Regards Graham -- debian-science-maintainers mailing list debian-science-maintainers@lists.alioth.debian.org

Bug#868523: FTBFS: test failed 617 ML_MLP_NonSym_MPI_4, 668 Phalanx_dag_manager_MPI_1

On 24/07/2017 10:40, Nico Schlömer wrote: Sounds more like a gAM bug then. Can this be closed? I intentionally didn't close this bug because the tests still fail if they are enabled. If the problem is caused by another package, then this bug should be reassigned to that package and marked

Bug#868873: dependence on libmumps-4.10.0 _AND_ libmumps-5.1.1 breaks make

On 24/07/2017 10:39, Nico Schlömer wrote: Thanks, Graham, for the analysis. You are welcome. It seems the Stretch freeze was so long that we've forgotten how transitions work. :) Some helpful references: https://wiki.debian.org/Teams/ReleaseTeam/Transitions

Bug#868873: dependence on libmumps-4.10.0 _AND_ libmumps-5.1.1 breaks make

On 23 July 2017 at 18:07, Nico Schlömer wrote: > Hm, funny! I don't get how libtrilinos-amesos12 should depend on > libmumps-4.10.0 when 5.1.1 is available. libtrilinos-amesos12/12.10.1-3 depends on libmumps-4.10.0 because libtrilinos_amesos.so.12 is linked to

Bug#868873: dependence on libmumps-4.10.0 _AND_ libmumps-5.1.1 breaks make

On 19/07/2017 13:32, Joachim Wuttke wrote: Since the recent update of Debian/testing from libmumps-4.10.0 to libmumps-5.1.1, trilinos-all depends on both of them. This breaks my build: make[2]: *** No rule to make target '/usr/lib/libsmumps.so', needed by after providing an ad-hoc link

Bug#868523: FTBFS: test failed 617 ML_MLP_NonSym_MPI_4, 668 Phalanx_dag_manager_MPI_1

Uploaded, please downgrade the severity of this bug once the builds are successful. -- debian-science-maintainers mailing list debian-science-maintainers@lists.alioth.debian.org http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-science-maintainers

Bug#868523: FTBFS: test failed 617 ML_MLP_NonSym_MPI_4, 668 Phalanx_dag_manager_MPI_1

On 16 July 2017 at 20:40, Nico Schlömer wrote: > I've disabled the phalanx tests in master, and also fixed two other things. > Perhaps it's time for an upload? Doing a test build now, will upload if successful. -- debian-science-maintainers mailing list

Bug#868523: FTBFS: test failed 617 ML_MLP_NonSym_MPI_4, 668 Phalanx_dag_manager_MPI_1

On 16 July 2017 at 13:12, Drew Parsons wrote: > Testing trilinos build on a porterbox for the mumps 5.1.1 transition. > > The following tests FAILED: > 617 - ML_MLP_NonSym_MPI_4 (Failed) > 668 - Phalanx_dag_manager_MPI_1 (Failed) > > Not sure if it's the new mumps,

Bug#864443: pytables: ftbfs on armhf

This package subsequently built in Ubuntu and I have just confirmed that it now builds on harris.d.o. There is already a binNMU pending for armhf, so if that is successful, this bug may be closed. -- debian-science-maintainers mailing list debian-science-maintainers@lists.alioth.debian.org

Bug#593231: freemat: window created, but input ignored

Hi Julian On 08/16/2010 03:58 PM, Julian Andres Klode wrote: > You can start freemat and the window appears, but is empty. Entering > something into it has no effect. Are you able to reproduce this behaviour with freemat 4.2+dfsg1-4 in Stretch? Regards Graham -- debian-science-maintainers

Bug#864443: pytables: ftbfs on armhf

On 8 June 2017 at 19:53, Michael Hudson-Doyle wrote: > pytables currently ftbfs on armhf Ubuntu, and it turns out it ftbfs on armhf > Debian too -- attaching the tail of a build log from a Debian porter box. It > started failing on Ubuntu in late January according to

Bug#864364: freemat: toolbox missing diff() and run_tests()

Control: tags -1 + pending These files are not very big, so instead of generating a new tarball, we can restore them with a patch until the next upstream release. I have pushed this to git [1], as well updating Files-Excluded, and enabling the diff() and hist() tests. Please let me know if you

Bug#864364: freemat: toolbox missing diff() and run_tests()

Source: freemat Version: debian/4.2+dfsg1-1_exp1 Hi Maintainer The diff() and run_tests() functions are missing from the freemat toolbox. The missing diff() function also causes the hist() function to fail. The run_tests() function provides a convenient way for a user to run the freemat tests

Bug#863793: freemat: please enable build-time and autopkgtest tests

I have this mostly working in Ubuntu, except s390x segfaults often. I'll push to git soon. -- debian-science-maintainers mailing list debian-science-maintainers@lists.alioth.debian.org http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-science-maintainers

Bug#863794: freemat: please re-enable LLVM support

How to verify that JIT is functioning correctly. Check whether JIT is enabled: --> jitcontrol ans = on Enable it if needed: --> jitcontrol('on') Run something that can be JIT compiled: --> A=0; for j=1:100; A=A+j; end Debug window in bottom-left should show 'Block JIT compiled at line

Bug#850150: freemat ftbfs with LLVM 3.9

The attached patch fixes the build with LLVM 4.0. However, JIT still needs to be re-enabled and properly tested, see #863794. Description: Fix build failure with default LLVM 4.0 Author: Graham Inggs <gin...@debian.org> Last-Update: 2017-06-03 --- a/CMakeLists.txt +++ b/CMakeLists.txt @@

Bug#863795: freemat: fails to start if ~/Private exists

Source: freemat Version: 4.0-2 Severity: normal Forwarded: https://sourceforge.net/p/freemat/bugs/489/ As reported to Ubuntu [1]: Freemat does not start if there is a file or a directory named Private in the user's home directory. This still affects freemat 4.2. [1]

Bug#863686: freemat: fails to start with llvm error

On 30/05/2017 06:45, Stuart Prescott wrote: Starting a fresh installation of freemat fails: $ freemat : CommandLine Error: Option 'x86-machine-combiner' registered more than once! LLVM ERROR: inconsistency in registered CommandLine options I see the same here. A no-change rebuild with

Bug#862969: r-cran-sp needs recompilation for R 3.4.0 ?

On 19 May 2017 at 14:55, Theodore Lytras wrote: > It was working until recently, i.e. before the upgrade from R 3.3 to 3.4. r-base in testing is 3.3.3-1 r-base in unstable is 3.4.0-1 and is blocked from migration due to #861333 > If I uninstall the debian package and compile

Bug#860697: deal.ii: FTBFS on i386: build-dependency not installable: trilinos-all-dev

Control: severity -1 wishlist On 19 April 2017 at 09:14, Lucas Nussbaum wrote: >> The following packages have unmet dependencies: >> sbuild-build-depends-deal.ii-dummy : Depends: trilinos-all-dev but it is >> not installable >> E: Unable to correct problems, you have held

Bug#859871: r-cran-sp: autopkgtests depend on non-existent r-cran-rgeos

Source: r-cran-sp Version: 1:1.2-4-1 Hi Maintainer Autopkgtests of r-cran-sp have been failing since the upload of 1:1.2-4-1 [1] with the error: badpkg: Test dependencies are unsatisfiable. A common reason is that your testbed is out of date with respect to the archive, and you need to use a

Bug#850965: freecad: GNOME Software catalog entry missing

On 24/01/2017 00:00, asciiw...@seznam.cz wrote: The issue seems to be still present. Please re-open the bug and state what is still needed. -- debian-science-maintainers mailing list debian-science-maintainers@lists.alioth.debian.org

Bug#852296: yade FTBFS on arm64: compiler processes terminated (machine runs out of RAM?)

On 23/01/2017 14:08, Adrian Bunk wrote: This buildd has 6 CPUs, but it has only 8 GB of RAM. From the last changelog entry: * [d763fbf] Set compat level to 10. The switch to debhelper 10 enabled parallel builds. Yade 2017.01a-1 FTBFS on most architectures in Ubuntu. The following changed

Bug#852283: libopenblas-dev: missing on mips64el

Source: openblas Version: 0.2.19-1 Severity: serious Hi Maintainer Architecture: mips64el was added to libopenblas-base but not libopenblas-dev. Was this an oversight? Regards Graham -- debian-science-maintainers mailing list debian-science-maintainers@lists.alioth.debian.org

Bug#851726: liggghts: FTBFS on single-CPU machines (not enough slots available)

See #850229. -- debian-science-maintainers mailing list debian-science-maintainers@lists.alioth.debian.org http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-science-maintainers

Bug#851320: trilinos: FTBFS on single-CPU machines (not enough slots available)

One solution here is to add '--oversubscribe' to all the mpirun commands, however it has been pointed out that this will fail if the user tries to use an alternate MPI implementation. See #850229. -- debian-science-maintainers mailing list debian-science-maintainers@lists.alioth.debian.org

Bug#850229: dune-grid: FTBFS (not enough slots available)

On 5 January 2017 at 13:46, Ansgar Burchardt wrote: > On my laptop with 4 cores + HT (so 8 threads), I see `mpirun` complain > once I start more than 4 processes, i.e. more processes than real > cores. Did you count threads or cores when you tried? I haven't been able to

Bug#850229: dune-grid: FTBFS (not enough slots available)

Hi On 05/01/2017 12:05, Santiago Vila wrote: Status:FAILED Output: -- There are not enough slots available in the system to satisfy the 2 slots that were requested by the application:

Bug#811986: qwtplot3d: diff for NMU version 0.2.7+svn191-10.1

Hi Arto On 23 December 2016 at 14:59, Arto Jantunen wrote: > I've prepared an NMU for qwtplot3d (versioned as 0.2.7+svn191-10.1) and > uploaded it to DELAYED/5. Please feel free to tell me if I > should delay it longer. Thanks for the upload. I'm not the maintainer, but I

Bug#835406: trilinos: FTBFS on 32-bit architectures

On 9 December 2016 at 09:49, Nico Schlömer wrote: > The patch looks really simple. Great! Do you think it'd be worthwhile > updating the PR [1] (or opening a new one)? Perhaps the kokkos devs can > figure out why the remaining tests are failing. No harm in trying, I

Bug#835406: trilinos: FTBFS on 32-bit architectures

Attached is an updated version of kokkos-32-bit.patch against upstream 12.10.1. It turns out that once the templates were fixed, the overloaded function declarations were not needed. Builds and test of Kokkos-only and all Trilinos packages on 64-bit architectures are not affected. On 32-bit

Bug#835406: trilinos: FTBFS on 32-bit architectures

Control: tags -1 patch Control: merge -1 836130 I've had another look at this after uploading 12.10.1. Upstream have added the following in packages/kokkos/core/src/Kokkos_Core_fwd.hpp: // // Have assumed a 64bit build

Bug#845082: (no subject)

On 29 November 2016 at 00:29, Breno Leitao wrote: > We just created a pull request to have this fixed upstream. Thanks! > Should we create a Debian patch also? This bug is tagged 'pending' and there's already a patch in the packaging git [1]. I did notice the patch uses

Bug#811986: qwtplot3d: FTBFS with GCC 6: symbol changes

Control: tags - 1 patch Hi Maintainer The attached patch works for me. Regards Graham --- a/debian/libqwtplot3d-qt4-0v5.symbols +++ b/debian/libqwtplot3d-qt4-0v5.symbols @@ -243,10 +243,10 @@ _ZN5Qwt3D4Axis9setMajorsEi@Base 0.2.7 _ZN5Qwt3D4Axis9setMinorsEi@Base 0.2.7

meshlab: FTBFS with GCC 6: cannot convert x to y

In addition to Gert Wollny's patch, the attached patch fixes narrowing conversions with GCC 6 on architectures where char is unsigned by default. Copying to debian-science-maintainers list in case someone is interested in rescuing this package. narrowing-conversion.patch Description:

Bug#836844: eigen3: autopkgtests fail on ppc64el

Control: reopen -1 I've just checked eigen3 3.3.0-1 on plummer.debian.org, and it still outputs forceMatrix*axisMatrix: -1 0 0 0 -2 0 0 0 -3 -- debian-science-maintainers mailing list debian-science-maintainers@lists.alioth.debian.org

Bug#842946: rheolef: please build everywhere

Source: rheolef Version: 6.7-1 Severity: wishlist Hi Maintainer Please consider making librheolef1 Architecture: any. In Ubuntu, rheolef builds additionally on arm64 and s390x. It is not a problem if not all architectures build on the buildds (unless they built previously). Regards Graham

Bug#841885: gerris: autopkgtests fail with openmpi2

The problem on Ubuntu's s390x autopkgtest runner was solved by putting back: export OMPI_MCA_plm_rsh_agent=/bin/false I have committed the change to git. -- debian-science-maintainers mailing list debian-science-maintainers@lists.alioth.debian.org

Bug#841885: gerris: autopkgtests fail with openmpi2

On 25 October 2016 at 17:32, Anton Gladky wrote: > feel free to commit directly to git. Thanks, I will do! When I looked previously, I thought the git hadn't been updated since 2014-03-23: https://anonscm.debian.org/cgit/debian-science/packages/gerris.git But now I see that

Bug#841885: gerris: autopkgtests fail with openmpi2

On 24 October 2016 at 21:46, Anton Gladky wrote: > thanks for your fix. I have committed it and it will be fixed by the next > upload. Thanks! There's no hurry for the next upload. In Ubuntu, I'm still seeing autopkgtests fail, but only on s390x, with the following message:

Bug#841885: gerris: autopkgtests fail with openmpi2

Source: gerris Version: 20131206+dfsg-9 Hi Maintainer Since the transition to openmpi2, gerris' autopkgtests have been failing with the following error: orte_ess_init failed --> Returned value A system-required executable either could not be found or was not executable by this user (-126)

Bug#837915: package builds crashing under fakeroot

Control: tags 837915 help Hi! On 25/09/2016 13:21, Michael Banck wrote: as I just diagnosed this for a different package: the problem appears to be that mpirun is run during binary-arch, i.e. under fakeroot. Latest openmpi does not like that apparenlty and crashes. Not sure how to fix it for

Bug#836130: trilinos: FTBFS without __sync_val_compare_and_swap_8

severity 836130 wishlist retitle 836130 trilinos: FTBFS without __sync_val_compare_and_swap_8 thanks Hi Aaron On 30 August 2016 at 20:18, Aaron M. Ucko wrote: > Source: trilinos > Version: 12.6.4-1 > Severity: serious > Justification: fails to build from source (but built

Bug#837121: gazebo: please restrict libkido-dev (build-)dependency to architectures where it is available

Control: reopen -1 Hi Maintainer I see you updated gazebo's build-dependencies in 7.3.0+dfsg-5. Please do the same for libgazebo7-dev's binary dependencies, i.e. --- a/debian/control +++ b/debian/control @@ -137,7 +138,7 @@ libignition-math2-dev, libbullet-dev,

Bug#837058: p4est: FTBFS due to test failures

Control: notfixed -1 1.1-3 Control: found -1 1.1-3 There are still two tests that fail intermittently: FAIL: test/p4est_test_loadsave FAIL: test/p8est_test_loadsave I believe upstream are aware of issues with openmpi 2. -- debian-science-maintainers mailing list

Bug#836983: freecad: autopkgtests fail on ppc64el and s390x

Source: freecad Version: 0.16+dfsg2-1 Severity: wishlist Hi Maintainer In Ubuntu, freecad 0.16+dfsg2-1 has been failing autopkgtests on ppc64el and 390x with the following error: == ERROR: testConversions

Bug#836844: eigen3: autopkgtests fail on ppc64el

Control: tags -1 patch Hi Anton > I think this can be ignored. But the question is interesting, > if it is platform-dependent. I saw the same behaviour on plummer.debian.org, a ppc64el porterbox. For the record, I applied the patch below in Ubuntu and eigen3 migrated. Regards Graham ---

Bug#836844: eigen3: autopkgtests fail on ppc64el

Source: eigen3 Version: 3.3~beta2-1 Severity: wishlist Hi Maintainer Since eigen3 3.3~beta2-1, its autopkgtests fail on ppc64el in Ubuntu [1]. Tests on other architectures remain successful [2]. I compared passing and failing test results and the only difference I can see is the passing test

Bug#835411: opensurgsim: FTBFS with eigen3 3.3~beta2-1

With eigen3 including upstream's patch mentioned by Philipp [1], opensurgsim now builds and passes all 12 tests on ppc64el, but fails 1 test on amd64 and 3 tests on arm64. I don't know if more work is needed in the eigen3 patch or in opensurgsim. [1]

Bug#835427: s/XML_NO_ERROR/XML_SUCCESS/

Hi Peter On 2 September 2016 at 23:15, Peter Green wrote: > Unfortunately while that patch fixed the FTBFS in raspbian stretch at the > time the package is now failing for us for a different reason. While I saw > this in raspbian I have no reason to belive it is

Bug#836420: python-getfem++: please depend on python-scipy for autopkgtests

Package: python-getfem++ Version: 5.0+dfsg1-1 Severity: wishlist Hi Anton Please add a dependency to python-getfem++ on python-scipy. It is required by the autopkgtests and probably for proper operation of python-getfem++ as well. --- a/debian/control +++ b/debian/control @@ -77,6 +78,7 @@

Bug#835406: trilinos: FTBFS on 32-bit architectures

On 29 August 2016 at 21:55, Nico Schlömer wrote: > When uploading, we could perhaps also include the point release 12.6.4. > (Current Debian is 12.6.3.) Sure, let's do that. Do you have time now to prepare 12.6.4 for upload? I can rebase and test my patches against

Bug#835406: trilinos: FTBFS on 32-bit architectures

bytes in size. This patch changes long to long long in some places (no change for 64-bit architectures), and adds function declarations needed for building on 32-bit architectures. Bug-Debian: https://bugs.debian.org/835406 Author: Graham Inggs <gin...@debian.org> Last-Update: 2016

Bug#260511: inventor: ivview/SoXtExaminerViewer popup menu only comes up once

Hi Maintainer This problem should have gone away in 2.1.5-10-17 when we switched from lesstif2 to motif. Regards Graham -- debian-science-maintainers mailing list debian-science-maintainers@lists.alioth.debian.org

Bug#830681: trilinos-all-dev: Updating binutils breaks trilinos

On 18 July 2016 at 18:53, Nico Schlömer wrote: > @Graham, would you like to upload? Sure, will do tomorrow. -- debian-science-maintainers mailing list debian-science-maintainers@lists.alioth.debian.org

Bug#820450: yade: FTBFS with glibc 2.23: 'isnan' was not declared in this scope

Control: reopen -1 Control: notfixed -1 1.20.0-9 Hi Anton It seems Gert's patch was included in 1.20.0-9, but with my name on it. 1.20.0-9 FTBFS on the Ubuntu buildds with the following error: In file included from /«PKGBUILDDIR»/lib/triangulation/FlowBoundingSphere.hpp:170:0,

Bug#824541: gmsh: please enable MPI again for architectures where possible

Source: gmsh Version: 2.12.0+dfsg1-2 Severity: wishlist Hi Maintainer In gmsh 2.5.1~beta2~svn12143~dfsg-2, MPI was disabled for certain architectures with the following line in debian/changelog: * [97cda71] Disable MPI on armel, armhf, kfreebsd-amd64, kfreebsd-i386, mips and

Bug#818814: mlpack: FTBFS with libc 2.23: there are no arguments to 'isnan' that depend on a template parameter

Control: tags -1 patch Hi Maintainer Please find a patch for this issue, as applied in Ubuntu. Regards Graham Description: Fix build with glibc 2.23 Bug: https://github.com/mlpack/mlpack/issues/522 Bug-Debian: https://bugs.debian.org/818814 Origin: upstream,

Bug#823839: oce: please rebuild against freeimage 3.17.0

Source: oce Version: 0.17.1-1 Severity: serious Hi Maintainer OCE needs to be rebuilt against the current version of freeimage in order to pick up the correct library paths in shipped CMake files. For example, /usr/lib/x86_64-linux-gnu/oce-0.16/OCE04_VisualizationTargets-relwithdebinfo.cmake

Bug#823816: freecad: New upstream version available

Source: freecad Version: 0.15.4671+dfsg1-4 Severity: wishlist Hi Maintainer A new upstream version 0.16 of FreeCAD is now available [1]. FreeCAD's page on sourceforge now displays the following: WARNING: FreeCAD has moved! FreeCAD code and release files are now hosted on github at

Bug#816101: petsc: FTBFS on mipsel - broken openmpi breaks petsc build

On 21 April 2016 at 17:19, Graham Inggs <gin...@debian.org> wrote: > This sounds a lot like the problem we have with powerpc, see bug #814183. I > think you may just have been very lucky in which powerpc buildds petsc has > landed on lately. Your luck ran out, the build faile

Bug#820450: yade: FTBFS with glibc 2.23: 'isnan' was not declared in this scope

Source: yade Version: 1.20.0-7 Hi Maintainer Yade FTBFS with glibc 2.23 available in Experimental and Ubuntu Xenial. I was able to get yade to build in Ubuntu with the attached patch. There are other occurrences of 'isnan' and 'isinf' inside #ifdefs that I did not replace. I don't know if it

Bug#820448: paraview-dev not installable

Source: paraview Version: 5.0.1+dfsg1-2 Hi Maintainer I found a typo in the dependencies of paraview-dev that make it not installable. Please see attached patch. Regards Graham diff -Nru paraview-5.0.1+dfsg1/debian/changelog paraview-5.0.1+dfsg1/debian/changelog ---

Bug#811731: dx: FTBFS with GCC 6: narrowing conversion

Control: tags -1 pending Fixed in git [1]. [1] https://anonscm.debian.org/cgit/debian-science/packages/dx.git/commit/?id=299356490270bd744f16b9cea66251bbcb32969f -- debian-science-maintainers mailing list debian-science-maintainers@lists.alioth.debian.org

Bug#813248: libdx4-dev: unhandled symlink to directory conversion: /usr/share/doc/PACKAGE

Control: tags -1 pending Fixed in git [1]. [1] https://anonscm.debian.org/cgit/debian-science/packages/dx.git/commit/?id=b15ad29a500f254fe2638347c9802bae4c9e434a -- debian-science-maintainers mailing list debian-science-maintainers@lists.alioth.debian.org

Bug#814149: add alternative for /usr/bin/dx

Hi Hans-Christoph On 8 February 2016 at 21:25, Hans-Christoph Steiner wrote: > We have just packaged the "Dalvik Explorer" aka android-platform-dalvik > which is always used as the command util 'dx'. Always? IBM's DX has been around since 1991. :) > This conflicts with >

Bug#767338: vtk6: autopkgtest fails on unexpected warning

Hi Anton What happened to this fix? I've just merged vtk6 6.2.0+dfsg1-7 into Ubuntu and had to add it again. Regards Graham -- debian-science-maintainers mailing list debian-science-maintainers@lists.alioth.debian.org

Bug#811223: FTBFS: perl texi2html: Can't use 'defined(@array)'

Control: tags -1 patch The attached patch was applied in Ubuntu. Description: Fix texi2html for Perl 5.22 Fixes FTBFS for arch:all - Can't use 'defined(@array)' Bug-Debian: https://bugs.debian.org/811223 Author: Graham Inggs <ginggs@debian.org> Last-Update: 2016-02-05 --- a/doc/texi2html

Bug#805193: aster: FTBFS: Fatal Error: finclude/petscsys.h: No such file or directory

Control: tags -1 pending I've committed the fix to git and will upload once libopenmpi1.10 is available (see #813042). -- debian-science-maintainers mailing list debian-science-maintainers@lists.alioth.debian.org

Bug#805193: aster: FTBFS: Fatal Error: finclude/petscsys.h: No such file or directory

Hi Peter On 13 December 2015 at 01:17, peter green wrote: > On 12/12/15 19:01, peter green wrote: >> >> >> New debdiff attatched, still no intent to NMU. > > Sorry, debdiff at > http://debdiffs.raspbian.org/main/a/aster/aster_11.5.0%2bdfsg2-3%2brpi1.debdiff Thanks for your

Bug#809708: suitesparse: please lower libatlas-doc recommends to suggests

Source: suitesparse Version: 1:4.4.5-2 Severity: wishlist Tags: patch Hi Maintainer Please consider lowering libsuitesparse-doc's Recommends on libatlas-doc to a Suggests, as per the attached patch. This will allow the suitesparse package to automatically synchronize into Ubuntu in future. The

Bug#806469: Parallel build FTBFS on amd64 in Ubuntu

Source: eigen3 Version: 3.3~alpha1-2 Severity: wishlist Tags: patch Hi Maintainer Similar to #805032 [1], I've had to disable parallel builds in order to get eigen3 to build on amd64 in Ubuntu. Please consider including the following patch along with your next upload so that eigen3 may be

Re: normaliz_3.0.0+ds-2_amd64.changes REJECTED

On 22 November 2015 at 07:04, Jerome BENOIT wrote: > I have just done the dirty manoeuvre and some checks: > it should be ok now. It looks OK to me. Shall I go ahead and upload? -- debian-science-maintainers mailing list debian-science-maintainers@lists.alioth.debian.org

Re: normaliz_3.0.0+ds-2_amd64.changes REJECTED

On 20 November 2015 at 14:06, Jerome BENOIT wrote: > It appears that the faulty one is the one in the archive, if it makes sense > to say so. > For a least two reasons: > 1] ` ./debian/rules get-orig-source ' gives the one in the git; > 2] the one in the archive is

Bug#805032: Parallel builds FTBFS on amd64 and ppc64el in Ubuntu

Source: yade Version: 1.20.0-5 Severity: wishlist Tags: patch Hi Maintainer I disabled parallel builds of yade for all architectures in Ubuntu, as per the attached patch. It has fixed the FTBFS on amd64 and ppc64el there. Please consider doing the same so that yade may be sync'd

Bug#801117: 4ti2: libzsolve.so is underlinked

stream&, __mpz_struct const*)' ../../../src/zsolve/.libs/libzsolve.so: undefined reference to `operator>>(std::istream&, __mpz_struct*)' Author: Graham Inggs <gra...@nerve.org.za> Last-Update: 2015-10-05 --- a/src/zsolve/Makefile.am +++ b/src/zsolve/Makefile.am @@ -91,7 +91,7

Bug#790196: [Debichem-devel] Please help porting rasmol to latest vte (Was: Bug#790196: rasmol: depends on vte which is deprecated)

Hi Andreas I'll have a look when I get a chance, possibly at debcamp next month. On 3 July 2015 at 21:24, Andreas Tille andr...@an3as.eu wrote: I had a look into the said issue but failed with ... No package 'vte' found Package vte was not found in the pkg-config search path. Perhaps you

Bug#763909: Bug#767919: unblock: viewmol/2.4.1-21

] + * Team upload. + * Add debian/gbp.conf + * Add Homepage and Vcs fields + + [ Graham Inggs ] + * Pre-apply debian/patches/150-getmachine_multiarch.patch. + * Update debian/rules: configure during the build-arch target. +Closes: #763909 + + -- Graham Inggs gra...@nerve.org.za Wed, 05 Nov 2014 11

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