Re: Tools for visualisation and 3D reconstruction from Medical Scanner DATA (DICOM medical imaging data) ?

2005-09-08 Thread Yaroslav Halchenko
\ = Keep in touch// \\ (yoh@|www.)onerussian.com Yaroslav Halchenko /( )\ ICQ#: 60653192 Linux User^^-^^[17] pgpOBMjv2b01I.pgp Description: PGP signature

mozilla-imagezoom extension

2005-09-15 Thread Yaroslav Halchenko
. Project website: http://imagezoom.yellowgorilla.net -- .-. =-- /v\ = Keep in touch// \\ (yoh@|www.)onerussian.com Yaroslav Halchenko /( )\ ICQ

Bug#356950: ITP: python-pyepl -- library for coding psychology experiments

2006-03-14 Thread Yaroslav Halchenko
Package: wnpp Severity: wishlist * Package name: python-pyepl Version : 1.0.9 Upstream Author : Ian Schleifer, Per Sederberg, Aaron Geller, Josh Jacobs * URL or Web page : http://pyepl.sourceforge.net * License : LGPL v2.1 Description : library for coding psychology

Re: alternatives to gnuplot ?

2006-04-07 Thread Yaroslav Halchenko
not sure on his intent (thus I CC Matthias -- please update on the status) -- .-. =-- /v\ = Keep in touch// \\ (yoh@|www.)onerussian.com Yaroslav Halchenko

Re: OT: naming your application was: Re: alternatives to gnuplot ?

2006-04-07 Thread Yaroslav Halchenko
package of eclipse or compiled from source? I am just curious why pydev is not in debian yet... -- .-. =-- /v\ = Keep in touch// \\ (yoh@|www.)onerussian.com Yaroslav Halchenko

jabref destiny

2006-06-05 Thread Yaroslav Halchenko
://www.toastfreeware.priv.at/debian/unstable/jabref_2.0.1+2.1b-2_i386.changes lacking read permissions for us ;-) -- .-. =-- /v\ = Keep in touch// \\ (yoh@|www.)onerussian.com Yaroslav

[LaTeX] natbib with numbers but with hangbib

2006-10-30 Thread Yaroslav Halchenko
. Unfortunately hangbib is active in natbib only for Author-Year style of citation. Can any one advise on how to overcome the problem? Overdefine bibliography environment may be, or ask on some other Latex mailing list? :-) Thanks everyone for reading -- Yaroslav Halchenko Research Assistant, Psychology

Re: embed fonts in eps from R?

2006-12-26 Thread Yaroslav Halchenko
using a simple formula that does not deal with out-of-gamut colors and often produce muddy looking results. -- .-. =-- /v\ = Keep in touch// \\ (yoh@|www.)onerussian.com Yaroslav

Re: embed fonts in eps from R?

2007-03-02 Thread Yaroslav Halchenko
program belongs to the xpdf package. -- Yaroslav Halchenko Research Assistant, Psychology Department, Rutgers-Newark Student Ph.D. @ CS Dept. NJIT Office: (973) 353-5440x263 | FWD: 82823 | Fax: (973) 353-1171 101 Warren Str, Smith Hall, Rm 4-105, Newark NJ 07102 WWW: http

[Latex/Bibtex] expand references within .tex

2007-03-08 Thread Yaroslav Halchenko
to accomplish my mission, but I can't google them up unfortunately. I would really appreciate any hints and links. Yours -- Yaroslav Halchenko Research Assistant, Psychology Department, Rutgers-Newark Student Ph.D. @ CS Dept. NJIT Office: (973) 353-5440x263 | FWD: 82823 | Fax: (973) 353-1171 101

Re: [Latex/Bibtex] expand references within .tex

2007-03-09 Thread Yaroslav Halchenko
the expansion I wanted - it just embeds \inputs in the .tex body, which is also the need I accomplished with a sed script before I re-discovered rubber ;-) Cheers Yarik On Fri, 09 Mar 2007, Andre Lehovich wrote: --- Yaroslav Halchenko [EMAIL PROTECTED] wrote: I was requested by publisher to expand all

Re: bibliography package

2007-03-09 Thread Yaroslav Halchenko
/DebianSciencePublishing -- Yaroslav Halchenko Research Assistant, Psychology Department, Rutgers-Newark Student Ph.D. @ CS Dept. NJIT Office: (973) 353-5440x263 | FWD: 82823 | Fax: (973) 353-1171 101 Warren Str, Smith Hall, Rm 4-105, Newark NJ 07102 WWW: http://www.linkedin.com/in/yarik

Re: pkg-science, again

2008-03-02 Thread Yaroslav Halchenko
by short articles would be highly valuable to both the machine learning and the general scientific community http://www.jmlr.org/papers/volume8/sonnenburg07a/sonnenburg07a.pdf -- Yaroslav Halchenko Research Assistant, Psychology Department, Rutgers-Newark Student Ph.D. @ CS Dept. NJIT Office

Re: Bug#426581: meshlab - anyone still working on this

2008-04-04 Thread Yaroslav Halchenko
://esko.osmas.info/~tmx/meshlab/ and at the launchpad site. Best, Teemu -- Yaroslav Halchenko Research Assistant, Psychology Department, Rutgers-Newark Student Ph.D. @ CS Dept. NJIT Office: (973) 353-5440x263 | FWD: 82823 | Fax: (973) 353-1171 101 Warren Str, Smith Hall, Rm 4-105, Newark NJ 07102 WWW

Re: migration from svn to git

2008-05-22 Thread Yaroslav Halchenko
/FAIL2BAN-$tag; done -- Yaroslav Halchenko Research Assistant, Psychology Department, Rutgers-Newark Student Ph.D. @ CS Dept. NJIT Office: (973) 353-5440x263 | FWD: 82823 | Fax: (973) 353-1171 101 Warren Str, Smith Hall, Rm 4-105, Newark NJ 07102 WWW: http://www.linkedin.com/in/yarik

python-openopt (corrected address - reply to this one)

2008-05-28 Thread Yaroslav Halchenko
selected (compatible) subgroup of scikits into Debian in some uniform packaging? (so if I package python-openopt then it shouldn't make available openopt module but rather scikits.openopt) Thank you in advance for clarifications -- Yaroslav Halchenko Research Assistant, Psychology Department, Rutgers

Bug#484127: RFP: ipopt -- large scale nonlinear optimization of continuous systems

2008-06-02 Thread Yaroslav Halchenko
Package: wnpp Severity: wishlist * Package name: ipopt Version : 3.4.1 Upstream Author : Carl Laird and Andreas Waechter * URL : https://projects.coin-or.org/Ipopt * License : CPL Programming Lang: C++ Description : large scale nonlinear optimization

Re: Bug#559006: ITP: mlpy -- high-performance Python package for predictive modeling

2010-01-02 Thread Yaroslav Halchenko
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yet another talk submitted

2010-04-29 Thread Yaroslav Halchenko
.)onerussian.com Yaroslav Halchenko /( )\ ICQ#: 60653192 Linux User^^-^^[17] signature.asc Description: Digital signature

Re: yet another talk submitted

2010-04-29 Thread Yaroslav Halchenko
in touch// \\ (yoh@|www.)onerussian.com Yaroslav Halchenko /( )\ ICQ#: 60653192 Linux User^^-^^[17] -- To UNSUBSCRIBE, email to debian-science-requ...@lists.debian.org with a subject of unsubscribe. Trouble

Re: Reproducibility

2010-04-30 Thread Yaroslav Halchenko
. -- .-. =-- /v\ = Keep in touch// \\ (yoh@|www.)onerussian.com Yaroslav Halchenko /( )\ ICQ#: 60653192 Linux User^^-^^[17] -- To UNSUBSCRIBE, email

Re: Reproducibility

2010-04-30 Thread Yaroslav Halchenko
. -- .-. =-- /v\ = Keep in touch// \\ (yoh@|www.)onerussian.com Yaroslav Halchenko /( )\ ICQ#: 60653192 Linux User^^-^^[17] -- To UNSUBSCRIBE, email to debian-science-requ...@lists.debian.org

new task: machine-learning?

2010-06-07 Thread Yaroslav Halchenko
it looks reasonable/desired before I commit it. Please find a tentative task file attached. -- .-. =-- /v\ = Keep in touch// \\ (yoh@|www.)onerussian.com Yaroslav Halchenko

Re: new task: machine-learning?

2010-06-10 Thread Yaroslav Halchenko
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Re: new task: machine-learning?

2010-06-10 Thread Yaroslav Halchenko
-optimization), which would include glpk, openopt, etc; and that one should be suggested by machine-learning. -- .-. =-- /v\ = Keep in touch// \\ (yoh@|www.)onerussian.com Yaroslav

Re: new task: machine-learning?

2010-06-10 Thread Yaroslav Halchenko
On Thu, 10 Jun 2010, Yaroslav Halchenko wrote: scipy) and those would become a part of this task. May be generic frameworks (besides Matlab) could be suggested (weak dependency) as well -- feel free to contribute. ha -- there is already numericalcomputation -- added that one into suggests

Re: Integrating Machine Learning Software and Datasets withing debian

2010-06-10 Thread Yaroslav Halchenko
). -- .-. =-- /v\ = Keep in touch// \\ (yoh@|www.)onerussian.com Yaroslav Halchenko /( )\ ICQ#: 60653192 Linux User^^-^^[17] -- To UNSUBSCRIBE

Re: Integrating Machine Learning Software and Datasets withing debian

2010-06-12 Thread Yaroslav Halchenko
.)onerussian.com Yaroslav Halchenko /( )\ ICQ#: 60653192 Linux User^^-^^[17] -- To UNSUBSCRIBE, email to debian-science-requ...@lists.debian.org with a subject of unsubscribe. Trouble? Contact listmas...@lists.debian.org Archive: http

Re: Integrating Machine Learning Software and Datasets withing debian

2010-06-14 Thread Yaroslav Halchenko
previously with him; The patch includes any ML-related packages and WNPP bugs I could find. -- .-. =-- /v\ = Keep in touch// \\ (yoh@|www.)onerussian.com Yaroslav Halchenko

Re: Integrating Machine Learning Software and Datasets withing debian

2010-06-15 Thread Yaroslav Halchenko
in ;) -- .-. =-- /v\ = Keep in touch// \\ (yoh@|www.)onerussian.com Yaroslav Halchenko /( )\ ICQ#: 60653192 Linux User^^-^^[17

Re: Integrating Machine Learning Software and Datasets withing debian

2010-06-16 Thread Yaroslav Halchenko
about that and thanks for fixing and raising our awareness of the trip ;) -- .-. =-- /v\ = Keep in touch// \\ (yoh@|www.)onerussian.com Yaroslav Halchenko

Re: Big problems with scientifc use of amd64

2010-06-17 Thread Yaroslav Halchenko
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Re: Big problems with scientifc use of amd64

2010-06-17 Thread Yaroslav Halchenko
// \\ (yoh@|www.)onerussian.com Yaroslav Halchenko /( )\ ICQ#: 60653192 Linux User^^-^^[17] -- To UNSUBSCRIBE, email to debian-science-requ...@lists.debian.org with a subject of unsubscribe. Trouble? Contact listmas

Re: backports

2010-09-12 Thread Yaroslav Halchenko
in backports and testing only. Comments welcome. Best, Steffen -- .-. =-- /v\ = Keep in touch// \\ (yoh@|www.)onerussian.com Yaroslav Halchenko /( )\ ICQ

Re: Metapackage nanoscale-physics

2010-10-10 Thread Yaroslav Halchenko
// \\ (yoh@|www.)onerussian.com Yaroslav Halchenko /( )\ ICQ#: 60653192 Linux User^^-^^[17] -- To UNSUBSCRIBE, email to debian-science-requ...@lists.debian.org with a subject of unsubscribe. Trouble? Contact listmas...@lists.debian.org

Re: [DEP5] Asking for common wisdom on new field(s): References*

2010-11-26 Thread Yaroslav Halchenko
www.onerussian.com Yaroslav Halchenko www.ohloh.net/accounts/yarikoptic signature.asc Description: Digital signature

Re: Asking for common wisdom on new field(s): References*

2010-11-26 Thread Yaroslav Halchenko
for it -- =--= Keep in touch www.onerussian.com Yaroslav Halchenko www.ohloh.net/accounts/yarikoptic -- To UNSUBSCRIBE, email to debian-science-requ...@lists.debian.org with a subject

Re: Change InsightToolkit to use Review/Statistics?

2010-12-13 Thread Yaroslav Halchenko
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Re: Asking for common wisdom on new field(s): References*

2011-01-11 Thread Yaroslav Halchenko
, -- =--= Keep in touch www.onerussian.com Yaroslav Halchenko www.ohloh.net/accounts/yarikoptic -- To UNSUBSCRIBE, email to debian-science-requ...@lists.debian.org with a subject of unsubscribe. Trouble? Contact listmas...@lists.debian.org Archive

Re: reuploading a source package (same version)

2011-02-22 Thread Yaroslav Halchenko
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Re: updating mpi-defaults (decommissioning lam)

2011-04-07 Thread Yaroslav Halchenko
in touch www.onerussian.com Yaroslav Halchenko www.ohloh.net/accounts/yarikoptic -- To UNSUBSCRIBE, email to debian-science-requ...@lists.debian.org with a subject of unsubscribe. Trouble? Contact listmas...@lists.debian.org Archive: http

Fwd: [atlas-devel] tenure letters

2011-04-20 Thread Yaroslav Halchenko
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Re: Fwd: [atlas-devel] tenure letters

2011-04-20 Thread Yaroslav Halchenko
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Re: Fwd: [atlas-devel] tenure letters

2011-04-20 Thread Yaroslav Halchenko
. -- =--= Keep in touch www.onerussian.com Yaroslav Halchenko www.ohloh.net/accounts/yarikoptic -- To UNSUBSCRIBE, email to debian-science-requ...@lists.debian.org with a subject of unsubscribe. Trouble? Contact listmas

Re: Fwd: [atlas-devel] tenure letters

2011-04-21 Thread Yaroslav Halchenko
hasn't added this name in case I can only do it in one place) ;) find your place! ;) -- =--= Keep in touch www.onerussian.com Yaroslav Halchenko www.ohloh.net/accounts/yarikoptic

blends/tasks -- keep Pkg-URL for accepted packages?

2011-05-05 Thread Yaroslav Halchenko
). -- =--= Keep in touch www.onerussian.com Yaroslav Halchenko www.ohloh.net/accounts/yarikoptic -- To UNSUBSCRIBE, email to debian-science-requ...@lists.debian.org with a subject of unsubscribe. Trouble? Contact listmas

Re: blends/tasks -- keep Pkg-URL for accepted packages?

2011-05-06 Thread Yaroslav Halchenko
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Debian/Python at EuroScipy -- urgent request for quick feedback

2011-05-13 Thread Yaroslav Halchenko
! -- =--= Keep in touch www.onerussian.com Yaroslav Halchenko www.ohloh.net/accounts/yarikoptic -- To UNSUBSCRIBE, email to debian-science-requ...@lists.debian.org with a subject

Re: [Python-apps-team] Debian/Python at EuroScipy -- not urgent anymore request for feedback

2011-05-13 Thread Yaroslav Halchenko
. -- =--= Keep in touch www.onerussian.com Yaroslav Halchenko www.ohloh.net/accounts/yarikoptic -- To UNSUBSCRIBE, email to debian-science-requ...@lists.debian.org with a subject

Re: updating mpi-defaults (decommissioning lam)

2011-06-19 Thread Yaroslav Halchenko
case, though. -- .-. =-- /v\ = Keep in touch// \\ (yoh@|www.)onerussian.com Yaroslav Halchenko /( )\ ICQ#: 60653192 Linux User

Slides available for my talk@EuroScipy

2011-09-06 Thread Yaroslav Halchenko
, On Fri, 13 May 2011, Yaroslav Halchenko wrote: Hi, and sorry for cross-posting, but I thought it is relevant to all of you. Just an hour ago I was hinted that since I am to attend Neuroscience sattelite meeting at euroscipy 2011, I might like to present something within the main program

Re: how to debug debuild process

2011-09-26 Thread Yaroslav Halchenko
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Re: Propose new scientific packages from sponsoring.

2011-11-18 Thread Yaroslav Halchenko
developer able to manage my packages and add more. Please respond. Thank you Marcos Mayorga -- =--= Keep in touch www.onerussian.com Yaroslav Halchenko www.ohloh.net/accounts

Re: [ni...@thykier.net: Orphaning genesis -- general-purpose neural simulator]

2011-12-09 Thread Yaroslav Halchenko
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Re: Bug#602126: Multi-distribution package in preparation

2012-02-08 Thread Yaroslav Halchenko
this Summer. -- =--= Keep in touch www.onerussian.com Yaroslav Halchenko www.ohloh.net/accounts/yarikoptic -- To UNSUBSCRIBE, email to debian-science-requ...@lists.debian.org

Fedora Scientific

2012-03-16 Thread Yaroslav Halchenko
+ ;) -- =--= Keep in touch www.onerussian.com Yaroslav Halchenko www.ohloh.net/accounts/yarikoptic -- To UNSUBSCRIBE, email to debian-science-requ...@lists.debian.org with a subject

Re: New Debian Science metapackages (Was: debian-science_0.16_amd64.changes ACCEPTED into unstable)

2012-04-17 Thread Yaroslav Halchenko
bugs: 667587 Thank you for your contribution to Debian. -- =--= Keep in touch www.onerussian.com Yaroslav Halchenko www.ohloh.net/accounts/yarikoptic -- To UNSUBSCRIBE, email

Re: Communication on Debian Science Was: (Re: New Debian Science metapackages (Was: debian-science_0.16_amd64.changes ACCEPTED into unstable))

2012-04-18 Thread Yaroslav Halchenko
://www.nature.com/nature/journal/v482/n7386/full/nature10836.html -- =--= Keep in touch www.onerussian.com Yaroslav Halchenko www.ohloh.net/accounts/yarikoptic -- To UNSUBSCRIBE, email

Re: Debian at ESRF

2012-04-18 Thread Yaroslav Halchenko
keep us posted and let us know if we could be of an extra help -- =--= Keep in touch www.onerussian.com Yaroslav Halchenko www.ohloh.net/accounts/yarikoptic -- To UNSUBSCRIBE, email

Re: New Debian Science metapackages (Was: debian-science_0.16_amd64.changes ACCEPTED into unstable)

2012-04-18 Thread Yaroslav Halchenko
://dsnra.jpl.nasa.gov/software/debian_versions.html -- =--= Keep in touch www.onerussian.com Yaroslav Halchenko www.ohloh.net/accounts/yarikoptic -- To UNSUBSCRIBE, email to debian-science

Re: New Debian Science metapackages (Was: debian-science_0.16_amd64.changes ACCEPTED into unstable)

2012-04-20 Thread Yaroslav Halchenko
more -- please chime in. -- =--= Keep in touch www.onerussian.com Yaroslav Halchenko www.ohloh.net/accounts/yarikoptic -- To UNSUBSCRIBE, email to debian-science-requ

Re: BibTeX file from debian/upstream data (Was: New Debian Science metapackages)

2012-04-21 Thread Yaroslav Halchenko
format in debian/upstream, and use 'and' as a separator? On Sat, 21 Apr 2012, Andreas Tille wrote: On Fri, Apr 20, 2012 at 12:34:40PM -0400, Yaroslav Halchenko wrote: * write a script to gather bib references from http://wiki.debian.org/CategoryPublication into a .bib file Because

Re: BibTeX file from debian/upstream data (Was: New Debian Science metapackages)

2012-04-22 Thread Yaroslav Halchenko
and will start composing them for mine whenever I upload any new revision. -- =--= Keep in touch www.onerussian.com Yaroslav Halchenko www.ohloh.net/accounts/yarikoptic

Bug#670443: RFP: ojs -- Open Journal Systems

2012-04-25 Thread Yaroslav Halchenko
Package: wnpp Severity: wishlist * Package name: ojs Version : 2.3.7 Upstream Author : The Public Knowledge Project pkp.cont...@gmail.com * URL : http://pkp.sfu.ca/ojs_download * License : GPL Programming Lang: PHP Description : Open Journal Systems --

Re: Debian at GSI

2012-05-21 Thread Yaroslav Halchenko
Hi Christopher, That is indeed a great story of success for the Debian project. Thank you for sharing! I wonder if there is any representative page at gsi.de which would mirror your statement? Googling for debian on gsi.de comes back with lots of links, including such as

Re: [OT - or may be not] The case for open computer programs

2012-05-29 Thread Yaroslav Halchenko
On Tue, 29 May 2012, Brendon Higgins wrote: http://www.sciencemag.org/content/336/6078/159.full [snip] Meanwhile we can just keep going forward making it all possible ;) ... In this context, open _code_ and open _platforms_ are two different (albeit related) beasts. ... Ideally the

Re: RE : Kudos to High Energy Physics packagers (Re: r3479 - /projects/science/trunk/debian-science/tasks/highenergy-physics)

2012-07-14 Thread Yaroslav Halchenko
my 1 c On Sat, 14 Jul 2012, PICCA Frédéric-Emmanuel wrote: Hello, yes we are preparing a PAN Blend (Photon and Neutron Blend) dedicated to the synchrotron and neutron facilities. Although I might sound hypocritical, I am not sure if separating out into a new blend would be worthwhile unless

Re: You can now check BibTeX file obtained from debian/upstream files

2012-08-30 Thread Yaroslav Halchenko
On Sun, 06 May 2012, Andreas Tille wrote: At http://blends.debian.net/packages-metadata/ you can find the files debian.{bib,tex,pdf}. All these files are Thank you Andreas once again for pushing this. quick better-later-than-never comment: wouldn't it be nice to have some bibtex

Re: You can now check BibTeX file obtained from debian/upstream files

2012-08-31 Thread Yaroslav Halchenko
On Fri, 31 Aug 2012, Andreas Tille wrote: DSCPackages = {source1, source2, ...} # there could be multiple or DEBPackages = {binary1, binary2, ...} so that .bib is sufficient to point to the corresponding package(s) ? There is the (not yet documented Field[1]) Debian-Package where

Re: You can now check BibTeX file obtained from debian/upstream files

2012-09-05 Thread Yaroslav Halchenko
On Sun, 02 Sep 2012, Andreas Tille wrote: DebianPackage) could be automatically filled up -- you already have package names in the .tex table you generate, but not in .bib (which is what I whined about) A, this was not clear to me because I somehow fail to see any use case for this.

Re: You can now check BibTeX file obtained from debian/upstream files

2012-09-06 Thread Yaroslav Halchenko
On Thu, 06 Sep 2012, Andreas Tille wrote: ultimate use case -- tool which given a list of packages returns list of bibliography entries ready for use in a publication. I could imagine several ways to answer this question (my prefered way would be to use UDD). Doing this based on the

[RFC] debian/upstream -- add Funding: field

2013-03-13 Thread Yaroslav Halchenko
Many projects are often (fully or partially) supported by different governmental agencies and/or private funds. Those in turn often request (or at least ask) to acknowledge such sources of funding on projects pages and corresponding products. ATM there is quite a few of such projects maintained

http://wiki.debian.org/UpstreamMetadata -- broken links to .bib-related pages

2013-03-13 Thread Yaroslav Halchenko
in UDD loading through a YAML intermediate http://upstream-metadata.debian.net/for_UDD/biblio.yaml -- NOT FOUND http://anonscm.debian.org/viewvc/collab-qa/udd/config-org.yaml -- An Exception Has Occurred ... -- Yaroslav O. Halchenko http://neuro.debian.net http://www.pymvpa.org

UpstreamMetadata -- any official reference

2013-03-13 Thread Yaroslav Halchenko
Is there any other than DEP 12 public reference to this effort ( proceedings/talk/abstract ) which could serve as an official reference for this effort? -- Yaroslav O. Halchenko http://neuro.debian.net http://www.pymvpa.org http://www.fail2ban.org Senior Research Associate, Psychological and

Re: [RFC] debian/upstream -- add Funding: field

2013-03-13 Thread Yaroslav Halchenko
On Wed, 13 Mar 2013, Andreas Tille wrote: Funding: NSF OCI-12345 This is correct syntax. check or a list Funding: - NSF OCI-12345 - NIH XXX-12345 Is that correct approach/syntax? I admit, I'm not sure whether this is correct YAML. Any reason to not simply use

missing banner on debian-science task pages

2013-03-28 Thread Yaroslav Halchenko
e.g. http://blends.alioth.debian.org/science/tasks/meteorology page has empty banner on top -- shouldn't (wasn't) there some logo -- img is missing src there entirely. -- Yaroslav O. Halchenko http://neuro.debian.net http://www.pymvpa.org http://www.fail2ban.org Senior Research Associate,

Re: Wiki for science package is damaged

2013-04-11 Thread Yaroslav Halchenko
That is because UDD is currently not exposed via DDE (ie not listed on http://dde.debian.net/dde/?list). Related discussion is https://lists.debian.org/debian-qa/2012/03/msg00043.html but I am myself not clear on what is the current status/plan? On Thu, 11 Apr 2013, melchiaros wrote: Hi, this

Re: Report from Debian Science BoF at DebConf 13

2013-08-12 Thread Yaroslav Halchenko
Lame me missed the whole debconf13 in physical presence and remote participation in this BoF. FWIW it is great to see that discussion was going about the issue of citations. From the wiki: Create a dh_science helper All debian/upstream files could be installed inside the binary package

debian/upstream::references:multiple_components

2013-08-22 Thread Yaroslav Halchenko
oki doki -- since it seems to be too quiet... let me start from an attacking angle: by using debian/upstream as the container for publication references we can't decouple separate components having different publication references to use for different components, neither shipped in separate

Re: Packaging special packages

2013-09-11 Thread Yaroslav Halchenko
Hi Ole, From what I understand there are really two questions: - should we upload small pipeline packages? NB Julian's comment on They are not useful for the general public imho should not of concern here -- probably major part of the Debian archive is not useful for the general public and that

Re: hello from potential new maintainer

2013-10-08 Thread Yaroslav Halchenko
On Tue, 08 Oct 2013, Ghislain Vaillant wrote: Hi everyone, Thought I would introduce myself first before submitting anything here. I am a Ph.D. student in medical imaging with a special interest in I guess the work of http://www.debian.org/devel/debian-med/ and http://neuro.debian.net/

Re: RFS: VLFeat computer vision library

2013-11-22 Thread Yaroslav Halchenko
FWIW -- I have tried to build backports using our neurodebian setup... it seem that all 32bit userland builds (while system is running on 64bit kernel) fail with ... bin/glnxa64/objs/aib.o bin/glnxa64/objs/array.o bin/glnxa64/objs/covdet.o bin/glnxa64/objs/fisher.o

Re: RFS: VLFeat computer vision library

2013-11-22 Thread Yaroslav Halchenko
On Fri, 22 Nov 2013, Dima Kogan wrote: faith in it now. Yaroslav, can you pleaase try it again on your 32-bit install? I can set one up in emulation, but hopefully it just works now. The tree is here: http://anonscm.debian.org/gitweb/?p=debian-science/packages/vlfeat.git for lazy me it

Re: Conflict between debian/upstream (DEP-12) debian/upstream/ (uscan)

2014-02-22 Thread Yaroslav Halchenko
Have I missed the background? is debian/watch getting renamed to debian/upstream -- where is the conflict? On Wed, 12 Feb 2014, Andreas Tille wrote: Hi, On Wed, Feb 12, 2014 at 04:11:41PM +0900, Charles Plessy wrote: Le Wed, Feb 12, 2014 at 12:06:42AM -0500, James McCoy a écrit : That

Re: Conflict between debian/upstream (DEP-12) debian/upstream/ (uscan)

2014-02-22 Thread Yaroslav Halchenko
of uscan using now debian/upstream/signing-key.*. Now such a rename in uscan is IMHO only brings even more confusion among debian/ files (debian/watch which uses debian/upstream/signing-key.*). On Sat, 22 Feb 2014, Yaroslav Halchenko wrote: Have I missed the background? is debian/watch getting

Re: Bug#742639: ITP: python-expyriment -- Python library for cognitive and neuroscientific experiments

2014-03-26 Thread Yaroslav Halchenko
Hi Oliver, Andreas, of the Debian Science team (I am part of too), suggested to invite you to join. Given that as the upstream developer of expyriment you are primarily interested to have only that piece packaged/distributed through Debian, not sure if it would be of direct interest to you. But

Re: Bug#742573: ITP: seaborn -- Python statistical visualization library

2014-03-26 Thread Yaroslav Halchenko
On Wed, 26 Mar 2014, Andreas Tille wrote: since I assume you will maintain this package in Debian Science team I'm lazy me didn't think about placing it under Debian Science but I guess it shouldn't hurt ;-) would need to recall (GIT) layout/procedures. if you have a look

Re: Choosing proper Section field (Was: Bug#742639: ITP: python-expyriment -- Python library for cognitive and neuroscientific experiments)

2014-04-02 Thread Yaroslav Halchenko
On Wed, 02 Apr 2014, Andreas Tille wrote: Hi, just one quick additional note: Please use Priority: optional. The rationale is discussed in several threads and documented in team policy. I would also (strongly) recommend debhelper compat level 9 - but the NeuroDebian people might have

Re: Choosing proper Section field (Was: Bug#742639: ITP: python-expyriment -- Python library for cognitive and neuroscientific experiments)

2014-04-03 Thread Yaroslav Halchenko
NB please stop CCing me and even NeuroDebian team -- both of us (me and Michael) are on the debian-science ML Oliver -- are you on the list? On Thu, 03 Apr 2014, Andreas Tille wrote: Does that mean that you want me to set the debchange back to version-1 and remove that tag. No problem.

Re: Choosing proper Section field (Was: Bug#742639: ITP: python-expyriment -- Python library for cognitive and neuroscientific experiments)

2014-04-03 Thread Yaroslav Halchenko
On Thu, 03 Apr 2014, Yaroslav Halchenko wrote: I will now build/check/upload the package. uploaded and pushed the tag Cheers! -- Yaroslav O. Halchenko, Ph.D. http://neuro.debian.net http://www.pymvpa.org http://www.fail2ban.org Senior Research Associate, Psychological and Brain Sciences

Re: Choosing proper Section field (Was: Bug#742639: ITP: python-expyriment -- Python library for cognitive and neuroscientific experiments)

2014-04-04 Thread Yaroslav Halchenko
On Fri, 04 Apr 2014, Andreas Tille wrote: The current changelog entry contains the changes to the first package (which makes sense if it was released somewhere) and most importantly the Closes: #742639 string. If you want to close a bug in Debian you should close it in an upload to

Re: Choosing proper Section field (Was: Bug#742639: ITP: python-expyriment -- Python library for cognitive and neuroscientific experiments)

2014-04-06 Thread Yaroslav Halchenko
. Oliver On 03/04/2014 03:00, Yaroslav Halchenko wrote: On Wed, 02 Apr 2014, Andreas Tille wrote: Hi, just one quick additional note: Please use Priority: optional. The rationale is discussed in several threads and documented in team policy. I would also (strongly) recommend

Re: Choosing proper Section field (Was: Bug#742639: ITP: python-expyriment -- Python library for cognitive and neuroscientific experiments)

2014-04-07 Thread Yaroslav Halchenko
On Mon, 07 Apr 2014, Oliver Lindemann wrote: Possible a very stupid question, but I can't replicate the reported linitan errors after I git-buildpackage. Any idea why? oliver@pecog-computserver:~/git$ lintian --version Lintian v2.5.10.4 I bet that is why: $ apt-cache policy

Re: Choosing proper Section field (Was: Bug#742639: ITP: python-expyriment -- Python liabrary for cognitive and neuroscientific experiments)

2014-04-08 Thread Yaroslav Halchenko
On Tue, 08 Apr 2014, Oliver Lindemann wrote: ha -- thanks to jwilk now I am aware of 17:59 #debian-python: jwilk: yoh: Lintian says: E: python-expyriment source: python-depends-but-no-python-helper python-expyriment

Re: Choosing proper Section field (Was: Bug#742639: ITP: python-expyriment -- Python liabrary for cognitive and neuroscientific experiments)

2014-04-09 Thread Yaroslav Halchenko
On Wed, 09 Apr 2014, Oliver Lindemann wrote: Thanks of the guidance. I guess I fixed all issues. I used dh_python2 thou, since dh_pysupport seems to be deprecated: [1]https://wiki.debian.org/Python/Policy ;-) good ... I forgot from which ubuntu release it became available so we

Re: Choosing proper Section field (Was: Bug#742639: ITP: python-expyriment -- Python liabrary for cognitive and neuroscientific experiments)

2014-04-12 Thread Yaroslav Halchenko
uploaded (and pushed now) and then realized that we should have also stripped python-support from all *Depends... so committed that one too Cheers On Thu, 10 Apr 2014, Yaroslav Halchenko wrote: Yes. Nd_build4all creates  packages for most releases (I can't check all, due

Re: Bye bye Debian Science

2015-02-06 Thread Yaroslav Halchenko
On Thu, 05 Feb 2015, Sylvestre Ledru wrote: Just a quick email to let you know that I am going to quit this team. Good luck Sylvestre in new endeavors!!! But if not Science any longer, I still hope we will have pleasure to see you around Debian ;-) -- Yaroslav O. Halchenko, Ph.D.

Re: How to open-source a program?

2015-02-08 Thread Yaroslav Halchenko
Hi Ole, Since you cross-posted to multiple lists, I am not sure if you got a reply... did you? ;) Has anyone already went through such an exercise and could assist me in writing a nice E-mail? Or are there better ways to proceed? There were quite a few of such emails circulating on

Re: Dealing with FTBFS with gcc 5 (Matthias?)

2015-02-12 Thread Yaroslav Halchenko
On Thu, 12 Feb 2015, Julien Puydt wrote: Hi, quite a number of FTBFS with gcc 5 bugs are hitting packages under the debian-science umbrella ; as I'm part of the team, I'll try to help on those, but since I have no clue what the problem(s) exactly is(are) yet, I have a few questions : 1.

Re: Should non-science packages needed by science packages be maintained by Debian Science?

2015-03-19 Thread Yaroslav Halchenko
On Thu, 19 Mar 2015, Andreas Tille wrote: thanks for working on these math packages. +1 Would it be appropriate for Debian Science to maintain memtailor, or should I just maintain itself? Theoretically, it could be a dependency for some future non-science package. Usually

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