[Denovoassembler-users] assembly error during taxon loading

2014-11-05 Thread Deborah Triant
Hi, I've been trying to use Ray to assemble a diploid plant genome with Illumina paired-end data. I am using it on a cluster with 1TB of RAM but it keeps failing at the same step, "Loading taxons" right after "Counting sequence biological abundance" exiting with a general Segmentation fault err

Re: [Denovoassembler-users] using checkpoints

2014-10-01 Thread Deborah Triant
I did not provide the checkpoint directory with my first run so I'll redo it with the correct options. Thanks for your help. On Oct 1, 2014, at 2:46 PM, Boisvert, Sebastien wrote: >> ____ >> From: Deborah Triant [dtri...@virginia.edu]

[Denovoassembler-users] using checkpoints

2014-09-30 Thread Deborah Triant
Hi, I am using the Ray assembler and hit the walltime on my cluster. I want to continue the assembly using the '-read-write-checkpoints' option but from what I've been reading here on the mailing list, it seems that I cannot do this unless I include it as an option in my original run. Here is