Hi, I am using the Ray assembler and hit the walltime on my cluster. I want to continue the assembly using the '-read-write-checkpoints' option but from what I've been reading here on the mailing list, it seems that I cannot do this unless I include it as an option in my original run.
Here is the format from my first run: ibrun Ray -p file1.fastq.gz -p file2.fastq.gz -show-memory-usage -o Ray.out 2>>Ray.error >>Ray.log For the second: ibrun Ray -p file1.fastq.gz -p file2.fastq.gz -show-memory-usage -read-write-checkpoints Ray_092614.checkpoints -o Ray2.out 2>>Ray.error >>Ray.log Would I have needed to include the -read-write-checkpoints in my first run for this to work or will Ray begin the run where it left off with the option included in the second run. I also changed the name of my output directory for the second run. Thanks! Deb ------------------------------------------------------------------------------ Meet PCI DSS 3.0 Compliance Requirements with EventLog Analyzer Achieve PCI DSS 3.0 Compliant Status with Out-of-the-box PCI DSS Reports Are you Audit-Ready for PCI DSS 3.0 Compliance? Download White paper Comply to PCI DSS 3.0 Requirement 10 and 11.5 with EventLog Analyzer http://pubads.g.doubleclick.net/gampad/clk?id=154622311&iu=/4140/ostg.clktrk _______________________________________________ Denovoassembler-users mailing list Denovoassembler-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/denovoassembler-users
