Hi Ino,
Thanks for the info!
This will indeed place me in the right direction.
Cheers
David
On Tue, Jul 22, 2014 at 4:51 PM, Ino de Bruijn
wrote:
> Hi David,
>
> Quast has some nice plots that just display the assembly lengths:
> http://quast.bioinf.spbau.ru/paper/e.coli/
>
> When you map your
Hi David,
Quast has some nice plots that just display the assembly lengths:
http://quast.bioinf.spbau.ru/paper/e.coli/
When you map your reads back to the assembly, there are some tools to help
you score your assembly
- FRCurve https://github.com/vezzi/FRC_align
- ALE http://www.ncbi.nlm.nih.gov
Dear Devoassembler users and Sébastien,
I have recently started using Ray Meta on some Illumina (HiSeq) RNA-Seq
data as this tool has been used by some collaborators with great success.
I have been trying to tweak my assemblies by varying the kmer length and
assessing the number of contigs, lengt
