Hello Ray users,
I am currently running assemblies of simulated data of human chromosome 21 with
Ray to see what sort of 'hybrid' coverage is needed to effectively assemble
primate genomes. With this trial, I use simulated short (250 insert size)
Illumina reads and simulated PacBio reads, attem
Hi,
I am getting a segmentation fault when I try to analyse my data with –k31.
The command is:
mpiexec -n 80 /global/software/ray/ray230/Ray -k 31 -i
HI.0946.004.Index_16.St-4_Rboth.fastq.pass_CPNHB_50.fastq –o test4
The error is:
mpiexec noticed that process rank 17 with PID 30162 on node cn
On 09/05/13 05:58 PM, Cedar Hesse wrote:
> Hello,
> I recently started using Ray in an attempt to assemble a metatranscriptome.
> I have tried multiple assemblies and repeatedly get a segmentation fault.
> The fault happens after contigs are written and the AMOS file is generated,
> however I d
Hello,
I recently started using Ray in an attempt to assemble a metatranscriptome.
I have tried multiple assemblies and repeatedly get a segmentation fault.
The fault happens after contigs are written and the AMOS file is
generated, however I don't think Ray gets to the scaffolding stage or any
d
On 23/03/13 07:36 AM, James Vincent wrote:
> Some updates:
>
>
>> It should be
>>
>> mpiexec -n 40 --mca btl ^sm Ray ...
>>
>> and not
>>
>> mpiexec -n 40 Ray -mca btl ^sm
>
> Corrected this
>
>
The upcoming v2.2.0 includes a fix so that recycling never loops infinitely.
>>
>>>-disable-recycl
On 15/03/13 02:47 PM, jjv5 wrote:
> Hello,
>
> I am unable to complete an assembly on the same machine and with the
> same parameters as soe previous runs but with a different set of input
> reads.
>
> The program runs for many hours and then gives a seg fault error:
>
> Rank 20: assembler memory u
Hello,
I am unable to complete an assembly on the same machine and with the
same parameters as soe previous runs but with a different set of input
reads.
The program runs for many hours and then gives a seg fault error:
Rank 20: assembler memory usage: 7002348 KiB
Rank 39: assembler memory usage
On 02/11/11 05:09 PM, CJ wrote:
> Hi Sébastien,
>
> When running Ray(1.6.1), I met a similar problem mentioned in the
> earlier post: http://sourceforge.net/mailarchive/message.php?msg_id=27844916
>
> I tried K-mer=21 / 31, each time has the same error message and it
> stopped after generating one
Hi Sébastien,
When running Ray(1.6.1), I met a similar problem mentioned in the
earlier post: http://sourceforge.net/mailarchive/message.php?msg_id=27844916
I tried K-mer=21 / 31, each time has the same error message and it
stopped after generating one CORE file:
[q27:12717] *** Process received
