Re: [Denovoassembler-users] Running meta ray

2013-12-13 Thread Sébastien Boisvert
On 11/12/13 05:44 PM, sheerli kruger wrote: > Hi Sebastien, > We will be using approximately 350 computing nodes. > Thank you, How many cores per node do you have ? > Sheerli > > >

Re: [Denovoassembler-users] Does the read length ave to be the same?

2013-12-13 Thread Sébastien Boisvert
On 12/12/13 08:45 AM, Hornung, Bastian wrote: > I think I read it in one of the other mails, but do all the reads have to > have the same length? No, this is not required. > Because ray crashes for me, when I put a trimmed (different sizes) single-end > fastq file into it. Do you also have pai

Re: [Denovoassembler-users] FW: FW: error issues: Parent and child are the same: 1 and 1

2013-12-13 Thread Sébastien Boisvert
On 02/12/13 07:37 PM, Patrick Laffy wrote: > Hi again, > > Thanks Pier-Luc for your responses to my queries, but so far I still keep > encountering the same issue. I have tried twice now to redownload the files. > Im reticent to delete the lines without knowing what the flow-on consequences > fo

Re: [Denovoassembler-users] FW: error issues: Parent and child are the same: 1 and 1

2013-12-13 Thread Sébastien Boisvert
On 25/11/13 06:36 PM, Patrick Laffy wrote: > HI Sebastian, > > Thanks for developing this tool for users, I have heard many great things > about its potential > > I am trying to assemble a Miseq paired end run with about 5 million reads of > a virus-enriched shotgun metagenome, and have used the

Re: [Denovoassembler-users] Does the read length ave to be the same?

2013-12-13 Thread Hornung, Bastian
Okay, thanks, then I know that at least for the future :). But as said, wasn't really the problem, but rather a mistake from my side :/. From: Sébastien Boisvert [sebastien.boisver...@ulaval.ca] Sent: Friday, December 13, 2013 3:08 PM To: Hornung, Bastian C