Re: [Denovoassembler-users] Ray installation error : SEEK_SET is #defined but must not be for the C++ binding of MPI. Include mpi.h before stdio.h"

2013-12-27 Thread Sébastien Boisvert
On 26/12/13 04:21 AM, Sucheta Tripathy wrote: > We found the following solution for Ray 2.3.0 installation on our HPC cluster: > > PREFIX=Build INTEL_COMPILER=y. we are getting following error > > However, we still have the following error. Any pointers in solving this > issue of installing Ray on

Re: [Denovoassembler-users] Question about Ray in the Cloud

2013-12-27 Thread Sébastien Boisvert
On 18/12/13 02:50 PM, Santiago Revale wrote: > Dear colleagues, Hi, > > I am working on the assembly of a plant chromosome (about 750 Mbp long) with > lots of repeated regions. > > I have a dataset of 617Mi 2x100 bp Illumina paired-end reads (1,234 Mi single > reads) and 1 Mi 510 bp average 454

Re: [Denovoassembler-users] Ion Torrent + Illumina Hybrid Assembly on Ray

2013-12-27 Thread Sébastien Boisvert
On 06/12/13 03:50 PM, Hornung, Bastian wrote: > I have only one 454 dataset here, but when I put that together with my > Illumina data, I got worse assemblies with it. I assumed, like Sebastian > mentioned, that this could be due to the homopolymer errors. I would say it depends on the Illumina-

Re: [Denovoassembler-users] Path handle Re: Ray 2.3.0 actor...

2013-12-27 Thread Sébastien Boisvert
On 22/12/13 05:11 AM, Roberta Rezende wrote: Bonjour! I’m trying now to use only my Mac. It is an OS 10.9.1 I’m having trouble …. :-/ so, wen i try the “make” command, I have $ make PREFIX=ray-build CXX code/SeedingData/PathHandle.o *code/SeedingData/PathHandle.cpp:66:9: **error: **use of o

Re: [Denovoassembler-users] Installation of Ray 2.3.0 in cluster

2013-12-27 Thread Sébastien Boisvert
On 24/12/13 01:06 AM, Sucheta Tripathy wrote: > Hi, > > We are trying to install latest version of Ray on our HPC cluster and it > throws the following error: > > [root@login1 Ray-2.3.0]# make >CXX code/application_core/ray_main.o > In file included from > /app/l_ics_2012/impi/4.0.3.008/intel6