On 24/12/13 01:06 AM, Sucheta Tripathy wrote: > Hi, > > We are trying to install latest version of Ray on our HPC cluster and it > throws the following error: > > [root@login1 Ray-2.3.0]# make > CXX code/application_core/ray_main.o > In file included from > /app/l_ics_2012/impi/4.0.3.008/intel64/include/mpi.h:1221 > <http://4.0.3.008/intel64/include/mpi.h:1221>, > from RayPlatform/RayPlatform/memory/DirtyBuffer.h:27, > from RayPlatform/RayPlatform/memory/RingAllocator.h:25, > from ./code/SeedingData/SeedWorker.h:28, > from ./code/SeedingData/SeedingData.h:27, > from ./code/SeedExtender/DepthFirstSearchData.h:27, > from code/application_core/Machine.h:37, > from code/application_core/ray_main.cpp:22: > /app/l_ics_2012/impi/4.0.3.008/intel64/include/mpicxx.h:93:2 > <http://4.0.3.008/intel64/include/mpicxx.h:93:2>: error: > #error "SEEK_SET is #defined but must not be for the C++ binding of MPI.
Hi, This is a known problem with the Intel compiler I think. You can add -DMPICH_IGNORE_CXX_SEEK to your CXXFLAGS. Something like this should work: make CXXFLAGS=" -DMPICH_IGNORE_CXX_SEEK -xHOST -O3 -Wall" > Include mpi.h before stdio.h" > /app/l_ics_2012/impi/4.0.3.008/intel64/include/mpicxx.h:97:2 > <http://4.0.3.008/intel64/include/mpicxx.h:97:2>: error: > #error "SEEK_CUR is #defined but must not be for the C++ binding of MPI. > Include mpi.h before stdio.h" > /app/l_ics_2012/impi/4.0.3.008/intel64/include/mpicxx.h:102:2 > <http://4.0.3.008/intel64/include/mpicxx.h:102:2>: error: > #error "SEEK_END is #defined but must not be for the C++ binding of MPI. > Include mpi.h before stdio.h" > make: *** [code/application_core/ray_main.o] Error 1 > > As per the above error we have the solution (Pls find the link) > -- > > So, it clearly needs mpi.h defined before stdio.h. I am wondering in which > file we should make this change. > > Best > > Sucheta > > -- > Sucheta Tripathy, Ph.D > Scientist, Ramalingaswamy Fellow, > Indian Institute of Chemical Biology, > Kolkata, India. > https://sites.google.com/site/suchetalab/ > https://twitter.com/tsucheta ------------------------------------------------------------------------------ Rapidly troubleshoot problems before they affect your business. Most IT organizations don't have a clear picture of how application performance affects their revenue. With AppDynamics, you get 100% visibility into your Java,.NET, & PHP application. Start your 15-day FREE TRIAL of AppDynamics Pro! http://pubads.g.doubleclick.net/gampad/clk?id=84349831&iu=/4140/ostg.clktrk _______________________________________________ Denovoassembler-users mailing list Denovoassembler-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/denovoassembler-users
