[jira] [Work started] (CLIMATE-453) Add Taylor Diagram example
[ https://issues.apache.org/jira/browse/CLIMATE-453?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Work on CLIMATE-453 started by Michael Joyce. Add Taylor Diagram example -- Key: CLIMATE-453 URL: https://issues.apache.org/jira/browse/CLIMATE-453 Project: Apache Open Climate Workbench Issue Type: Improvement Components: general Affects Versions: 0.3-incubating Reporter: Michael Joyce Assignee: Michael Joyce Fix For: 0.4 Add a simple example of using the toolkit to generate a Taylor diagram. -- This message was sent by Atlassian JIRA (v6.2#6252)
[jira] [Created] (CLIMATE-453) Add Taylor Diagram example
Michael Joyce created CLIMATE-453: - Summary: Add Taylor Diagram example Key: CLIMATE-453 URL: https://issues.apache.org/jira/browse/CLIMATE-453 Project: Apache Open Climate Workbench Issue Type: Improvement Components: general Affects Versions: 0.3-incubating Reporter: Michael Joyce Assignee: Michael Joyce Fix For: 0.4 Add a simple example of using the toolkit to generate a Taylor diagram. -- This message was sent by Atlassian JIRA (v6.2#6252)
[GitHub] climate pull request: CLIMATE-453 - Add Taylor Diagram creation ex...
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[GitHub] climate pull request: CLIMATE-453 - Add Taylor Diagram creation ex...
GitHub user MJJoyce opened a pull request: https://github.com/apache/climate/pull/55 CLIMATE-453 - Add Taylor Diagram creation example You can merge this pull request into a Git repository by running: $ git pull https://github.com/MJJoyce/climate CLIMATE-453 Alternatively you can review and apply these changes as the patch at: https://github.com/apache/climate/pull/55.patch To close this pull request, make a commit to your master/trunk branch with (at least) the following in the commit message: This closes #55 commit 91211e2e4f9a11e161efd7b030e4bf1f647ec8ae Author: Michael Joyce jo...@apache.org Date: 2014-06-04T17:39:05Z CLIMATE-453 - Add Taylor Diagram creation example --- If your project is set up for it, you can reply to this email and have your reply appear on GitHub as well. If your project does not have this feature enabled and wishes so, or if the feature is enabled but not working, please contact infrastructure at infrastruct...@apache.org or file a JIRA ticket with INFRA. ---
[jira] [Commented] (CLIMATE-453) Add Taylor Diagram example
[ https://issues.apache.org/jira/browse/CLIMATE-453?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanelfocusedCommentId=14017917#comment-14017917 ] ASF GitHub Bot commented on CLIMATE-453: GitHub user MJJoyce opened a pull request: https://github.com/apache/climate/pull/55 CLIMATE-453 - Add Taylor Diagram creation example You can merge this pull request into a Git repository by running: $ git pull https://github.com/MJJoyce/climate CLIMATE-453 Alternatively you can review and apply these changes as the patch at: https://github.com/apache/climate/pull/55.patch To close this pull request, make a commit to your master/trunk branch with (at least) the following in the commit message: This closes #55 commit 91211e2e4f9a11e161efd7b030e4bf1f647ec8ae Author: Michael Joyce jo...@apache.org Date: 2014-06-04T17:39:05Z CLIMATE-453 - Add Taylor Diagram creation example Add Taylor Diagram example -- Key: CLIMATE-453 URL: https://issues.apache.org/jira/browse/CLIMATE-453 Project: Apache Open Climate Workbench Issue Type: Improvement Components: general Affects Versions: 0.3-incubating Reporter: Michael Joyce Assignee: Michael Joyce Fix For: 0.4 Add a simple example of using the toolkit to generate a Taylor diagram. -- This message was sent by Atlassian JIRA (v6.2#6252)
[jira] [Commented] (CLIMATE-453) Add Taylor Diagram example
[ https://issues.apache.org/jira/browse/CLIMATE-453?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanelfocusedCommentId=14017921#comment-14017921 ] ASF GitHub Bot commented on CLIMATE-453: Github user OCWJenkins commented on the pull request: https://github.com/apache/climate/pull/55#issuecomment-45124701 Merged build started. Test Failed. Add Taylor Diagram example -- Key: CLIMATE-453 URL: https://issues.apache.org/jira/browse/CLIMATE-453 Project: Apache Open Climate Workbench Issue Type: Improvement Components: general Affects Versions: 0.3-incubating Reporter: Michael Joyce Assignee: Michael Joyce Fix For: 0.4 Add a simple example of using the toolkit to generate a Taylor diagram. -- This message was sent by Atlassian JIRA (v6.2#6252)
[jira] [Commented] (CLIMATE-453) Add Taylor Diagram example
[ https://issues.apache.org/jira/browse/CLIMATE-453?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanelfocusedCommentId=14017924#comment-14017924 ] ASF GitHub Bot commented on CLIMATE-453: Github user OCWJenkins commented on the pull request: https://github.com/apache/climate/pull/55#issuecomment-45124801 Merged build finished. Test Passed. Add Taylor Diagram example -- Key: CLIMATE-453 URL: https://issues.apache.org/jira/browse/CLIMATE-453 Project: Apache Open Climate Workbench Issue Type: Improvement Components: general Affects Versions: 0.3-incubating Reporter: Michael Joyce Assignee: Michael Joyce Fix For: 0.4 Add a simple example of using the toolkit to generate a Taylor diagram. -- This message was sent by Atlassian JIRA (v6.2#6252)
[jira] [Commented] (CLIMATE-453) Add Taylor Diagram example
[ https://issues.apache.org/jira/browse/CLIMATE-453?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanelfocusedCommentId=14017920#comment-14017920 ] ASF GitHub Bot commented on CLIMATE-453: Github user OCWJenkins commented on the pull request: https://github.com/apache/climate/pull/55#issuecomment-45124686 Merged build triggered. Test Failed. Add Taylor Diagram example -- Key: CLIMATE-453 URL: https://issues.apache.org/jira/browse/CLIMATE-453 Project: Apache Open Climate Workbench Issue Type: Improvement Components: general Affects Versions: 0.3-incubating Reporter: Michael Joyce Assignee: Michael Joyce Fix For: 0.4 Add a simple example of using the toolkit to generate a Taylor diagram. -- This message was sent by Atlassian JIRA (v6.2#6252)
[jira] [Created] (CLIMATE-454) VM Build does not copy dependency files to install directory
Michael Joyce created CLIMATE-454: - Summary: VM Build does not copy dependency files to install directory Key: CLIMATE-454 URL: https://issues.apache.org/jira/browse/CLIMATE-454 Project: Apache Open Climate Workbench Issue Type: Bug Components: build process Affects Versions: 0.3-incubating Reporter: Michael Joyce Assignee: Michael Joyce Fix For: 0.4 CLIMATE-427 moved all the VM build dependencies for pip/conda into config files. The VM initialization fails to copy them over during the VM build which causes it to fail. -- This message was sent by Atlassian JIRA (v6.2#6252)
[GitHub] climate pull request: CLIMATE-454 - Copy over install dependencies...
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[GitHub] climate pull request: CLIMATE-454 - Copy over install dependencies...
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[GitHub] climate pull request: CLIMATE-454 - Copy over install dependencies...
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[jira] [Commented] (CLIMATE-454) VM Build does not copy dependency files to install directory
[ https://issues.apache.org/jira/browse/CLIMATE-454?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanelfocusedCommentId=14017961#comment-14017961 ] ASF GitHub Bot commented on CLIMATE-454: Github user OCWJenkins commented on the pull request: https://github.com/apache/climate/pull/56#issuecomment-45129221 Merged build finished. Test Passed. VM Build does not copy dependency files to install directory Key: CLIMATE-454 URL: https://issues.apache.org/jira/browse/CLIMATE-454 Project: Apache Open Climate Workbench Issue Type: Bug Components: build process Affects Versions: 0.3-incubating Reporter: Michael Joyce Assignee: Michael Joyce Fix For: 0.4 CLIMATE-427 moved all the VM build dependencies for pip/conda into config files. The VM initialization fails to copy them over during the VM build which causes it to fail. -- This message was sent by Atlassian JIRA (v6.2#6252)
[jira] [Created] (CLIMATE-455) utils.reshape_monthly_to_annually should modify a copy of the passed dataset
Michael Joyce created CLIMATE-455: - Summary: utils.reshape_monthly_to_annually should modify a copy of the passed dataset Key: CLIMATE-455 URL: https://issues.apache.org/jira/browse/CLIMATE-455 Project: Apache Open Climate Workbench Issue Type: Bug Components: general Affects Versions: 0.3-incubating Environment: The utils helpers reshape_monthly_to_annually currently modifies the dataset's values array instead of manipulating a copy of the data and returning that. Reporter: Michael Joyce Assignee: Michael Joyce Fix For: 0.4 -- This message was sent by Atlassian JIRA (v6.2#6252)
[GitHub] climate pull request: Climate 451 - Remove virtualenvwrapper from ...
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[jira] [Created] (CLIMATE-456) Update DAP tests to use setupClass method for initialization
Michael Joyce created CLIMATE-456: - Summary: Update DAP tests to use setupClass method for initialization Key: CLIMATE-456 URL: https://issues.apache.org/jira/browse/CLIMATE-456 Project: Apache Open Climate Workbench Issue Type: Improvement Components: general Affects Versions: 0.3-incubating Reporter: Michael Joyce Assignee: Michael Joyce Fix For: 0.4 Move any class-wide OpenDAP test initialization into the setup_class method. -- This message was sent by Atlassian JIRA (v6.2#6252)
[jira] [Commented] (CLIMATE-455) utils.reshape_monthly_to_annually should modify a copy of the passed dataset
[ https://issues.apache.org/jira/browse/CLIMATE-455?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanelfocusedCommentId=14018019#comment-14018019 ] ASF GitHub Bot commented on CLIMATE-455: Github user OCWJenkins commented on the pull request: https://github.com/apache/climate/pull/58#issuecomment-45136669 Merged build started. Test Failed. utils.reshape_monthly_to_annually should modify a copy of the passed dataset Key: CLIMATE-455 URL: https://issues.apache.org/jira/browse/CLIMATE-455 Project: Apache Open Climate Workbench Issue Type: Bug Components: general Affects Versions: 0.3-incubating Environment: The utils helpers reshape_monthly_to_annually currently modifies the dataset's values array instead of manipulating a copy of the data and returning that. Reporter: Michael Joyce Assignee: Michael Joyce Fix For: 0.4 -- This message was sent by Atlassian JIRA (v6.2#6252)
[jira] [Commented] (CLIMATE-455) utils.reshape_monthly_to_annually should modify a copy of the passed dataset
[ https://issues.apache.org/jira/browse/CLIMATE-455?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanelfocusedCommentId=14018020#comment-14018020 ] ASF GitHub Bot commented on CLIMATE-455: Github user OCWJenkins commented on the pull request: https://github.com/apache/climate/pull/58#issuecomment-45136792 Merged build finished. Test Passed. utils.reshape_monthly_to_annually should modify a copy of the passed dataset Key: CLIMATE-455 URL: https://issues.apache.org/jira/browse/CLIMATE-455 Project: Apache Open Climate Workbench Issue Type: Bug Components: general Affects Versions: 0.3-incubating Environment: The utils helpers reshape_monthly_to_annually currently modifies the dataset's values array instead of manipulating a copy of the data and returning that. Reporter: Michael Joyce Assignee: Michael Joyce Fix For: 0.4 -- This message was sent by Atlassian JIRA (v6.2#6252)
[jira] [Commented] (CLIMATE-451) Getting Errors in virtualenv wrapper after running easy-ocw/install-osx.sh
[
https://issues.apache.org/jira/browse/CLIMATE-451?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanelfocusedCommentId=14018023#comment-14018023
]
Cameron Goodale commented on CLIMATE-451:
-
After a lot of trial and error, [~mjoyce] suggested we remove the
virtualenvwrapper from the os x install script. I removed it and ran some
tests and everything works well.
If people use the -e flag (and have easy-ocw create the virtualenv for them) I
also added in a suggestion that users setup an alias to make changing into the
ocw environment easier.
Getting Errors in virtualenv wrapper after running easy-ocw/install-osx.sh
---
Key: CLIMATE-451
URL: https://issues.apache.org/jira/browse/CLIMATE-451
Project: Apache Open Climate Workbench
Issue Type: Bug
Components: build process
Affects Versions: 0.3-incubating
Environment: OS X 10.8.5
Reporter: Cameron Goodale
Assignee: Cameron Goodale
Fix For: 0.4
Original Estimate: 3h
Remaining Estimate: 3h
I am able to use the install-osx.sh script to install a new 'ocw' virtual
env, but when I try to switch into the virtualenv using the 'workon' command
I get this error:
{code}
$ workon ocw
-bash: virtualenv_deactivate: command not found
Error: could not find environment: ocw
-bash: [: ==: unary operator expected
{code}
Also I noticed that when I run the 'lsvirtualenv' command I get the following
error:
{code}
$ lsvirtualenv
ocw
===
Error: did not expect more than one argument.
showvirtualenv [env]
{code}
After some googling I think the error message is actually coming from conda's
cli activate.py script.
https://github.com/conda/conda/blob/master/conda/cli/activate.py (See lines
53 and 95)
Need to work on this a little more to sort out this bug.
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[jira] [Commented] (CLIMATE-456) Update DAP tests to use setupClass method for initialization
[ https://issues.apache.org/jira/browse/CLIMATE-456?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanelfocusedCommentId=14018026#comment-14018026 ] ASF GitHub Bot commented on CLIMATE-456: GitHub user MJJoyce opened a pull request: https://github.com/apache/climate/pull/59 CLIMATE-456 - Move DAP test initialization to setup_class - Move OpenDAP test initialization to setup_class method. This also seems to fix the issue with nose-exclude not ignoring the test_dap file when instructed to - Rename the test class to fall inline with project naming standards. You can merge this pull request into a Git repository by running: $ git pull https://github.com/MJJoyce/climate CLIMATE-456 Alternatively you can review and apply these changes as the patch at: https://github.com/apache/climate/pull/59.patch To close this pull request, make a commit to your master/trunk branch with (at least) the following in the commit message: This closes #59 commit 2e0cd1139ea46a1c5af9f776b9d8366ed040a8bf Author: Michael Joyce jo...@apache.org Date: 2014-06-04T19:06:27Z CLIMATE-456 - Move DAP test initialization to setup_class - Move OpenDAP test initialization to setup_class method. This also seems to fix the issue with nose-exclude not ignoring the test_dap file when instructed to - Rename the test class to fall inline with project naming standards. Update DAP tests to use setupClass method for initialization Key: CLIMATE-456 URL: https://issues.apache.org/jira/browse/CLIMATE-456 Project: Apache Open Climate Workbench Issue Type: Improvement Components: general Affects Versions: 0.3-incubating Reporter: Michael Joyce Assignee: Michael Joyce Fix For: 0.4 Move any class-wide OpenDAP test initialization into the setup_class method. -- This message was sent by Atlassian JIRA (v6.2#6252)
[GitHub] climate pull request: CLIMATE-455 - Update reshape_monthly_to_annu...
Github user OCWJenkins commented on the pull request: https://github.com/apache/climate/pull/58#issuecomment-45136792 Merged build finished. Test Passed. --- If your project is set up for it, you can reply to this email and have your reply appear on GitHub as well. If your project does not have this feature enabled and wishes so, or if the feature is enabled but not working, please contact infrastructure at infrastruct...@apache.org or file a JIRA ticket with INFRA. ---
[GitHub] climate pull request: CLIMATE-456 - Move DAP test initialization t...
Github user OCWJenkins commented on the pull request: https://github.com/apache/climate/pull/59#issuecomment-45137494 Merged build finished. Test Passed. --- If your project is set up for it, you can reply to this email and have your reply appear on GitHub as well. If your project does not have this feature enabled and wishes so, or if the feature is enabled but not working, please contact infrastructure at infrastruct...@apache.org or file a JIRA ticket with INFRA. ---
[jira] [Commented] (CLIMATE-456) Update DAP tests to use setupClass method for initialization
[ https://issues.apache.org/jira/browse/CLIMATE-456?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanelfocusedCommentId=14018029#comment-14018029 ] ASF GitHub Bot commented on CLIMATE-456: Github user OCWJenkins commented on the pull request: https://github.com/apache/climate/pull/59#issuecomment-45137404 Merged build started. Test Failed. Update DAP tests to use setupClass method for initialization Key: CLIMATE-456 URL: https://issues.apache.org/jira/browse/CLIMATE-456 Project: Apache Open Climate Workbench Issue Type: Improvement Components: general Affects Versions: 0.3-incubating Reporter: Michael Joyce Assignee: Michael Joyce Fix For: 0.4 Move any class-wide OpenDAP test initialization into the setup_class method. -- This message was sent by Atlassian JIRA (v6.2#6252)
[jira] [Commented] (CLIMATE-456) Update DAP tests to use setupClass method for initialization
[ https://issues.apache.org/jira/browse/CLIMATE-456?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanelfocusedCommentId=14018028#comment-14018028 ] ASF GitHub Bot commented on CLIMATE-456: Github user OCWJenkins commented on the pull request: https://github.com/apache/climate/pull/59#issuecomment-45137387 Merged build triggered. Test Failed. Update DAP tests to use setupClass method for initialization Key: CLIMATE-456 URL: https://issues.apache.org/jira/browse/CLIMATE-456 Project: Apache Open Climate Workbench Issue Type: Improvement Components: general Affects Versions: 0.3-incubating Reporter: Michael Joyce Assignee: Michael Joyce Fix For: 0.4 Move any class-wide OpenDAP test initialization into the setup_class method. -- This message was sent by Atlassian JIRA (v6.2#6252)
[jira] [Created] (CLIMATE-457) Clean up after Easy-OCW install on Ubuntu
Michael Joyce created CLIMATE-457: - Summary: Clean up after Easy-OCW install on Ubuntu Key: CLIMATE-457 URL: https://issues.apache.org/jira/browse/CLIMATE-457 Project: Apache Open Climate Workbench Issue Type: Improvement Components: build process Affects Versions: 0.3-incubating Environment: Ubuntu 12.04 Reporter: Michael Joyce Fix For: 0.4 Easy OCW does not cleanup after itself on Ubuntu. It leaves behind a number of downloads and files from the dependency installation (Anaconda Python, Basemap, etc.) that should be removed. -- This message was sent by Atlassian JIRA (v6.2#6252)
[jira] [Work started] (CLIMATE-457) Clean up after Easy-OCW install on Ubuntu
[ https://issues.apache.org/jira/browse/CLIMATE-457?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Work on CLIMATE-457 started by Michael Joyce. Clean up after Easy-OCW install on Ubuntu - Key: CLIMATE-457 URL: https://issues.apache.org/jira/browse/CLIMATE-457 Project: Apache Open Climate Workbench Issue Type: Improvement Components: build process Affects Versions: 0.3-incubating Environment: Ubuntu 12.04 Reporter: Michael Joyce Assignee: Michael Joyce Fix For: 0.4 Easy OCW does not cleanup after itself on Ubuntu. It leaves behind a number of downloads and files from the dependency installation (Anaconda Python, Basemap, etc.) that should be removed. -- This message was sent by Atlassian JIRA (v6.2#6252)
[GitHub] climate pull request: Climate 451 - Remove virtualenvwrapper from ...
Github user MJJoyce commented on the pull request: https://github.com/apache/climate/pull/57#issuecomment-45139623 @cgoodale Can you please update the PR title so it mirrors properly to the relevant [JIRA](https://issues.apache.org/jira/browse/CLIMATE-451). 'Climate 451' - 'CLIMATE-451' --- If your project is set up for it, you can reply to this email and have your reply appear on GitHub as well. If your project does not have this feature enabled and wishes so, or if the feature is enabled but not working, please contact infrastructure at infrastruct...@apache.org or file a JIRA ticket with INFRA. ---
[jira] [Created] (CLIMATE-458) Add OCW UI setup to VM build
Michael Joyce created CLIMATE-458: - Summary: Add OCW UI setup to VM build Key: CLIMATE-458 URL: https://issues.apache.org/jira/browse/CLIMATE-458 Project: Apache Open Climate Workbench Issue Type: Improvement Components: build process Affects Versions: 0.3-incubating Reporter: Michael Joyce Assignee: Michael Joyce Fix For: 0.4 There is some minor configuration necessary to get the UI running after a clean checkout of the codebase (such as symlinking the frontend code to the expected location for the backend). We should automate this with the VM build. -- This message was sent by Atlassian JIRA (v6.2#6252)
[GitHub] climate pull request: CLIMATE-451 - Remove virtualenvwrapper from ...
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[GitHub] climate pull request: CLIMATE-457 - Cleanup after Easy-OCW install...
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[GitHub] climate pull request: CLIMATE-457 - Cleanup after Easy-OCW install...
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[GitHub] climate pull request: CLIMATE-456 - Move DAP test initialization t...
Github user asfgit closed the pull request at: https://github.com/apache/climate/pull/59 --- If your project is set up for it, you can reply to this email and have your reply appear on GitHub as well. If your project does not have this feature enabled and wishes so, or if the feature is enabled but not working, please contact infrastructure at infrastruct...@apache.org or file a JIRA ticket with INFRA. ---
[GitHub] climate pull request: CLIMATE-457 - Cleanup after Easy-OCW install...
Github user asfgit closed the pull request at: https://github.com/apache/climate/pull/60 --- If your project is set up for it, you can reply to this email and have your reply appear on GitHub as well. If your project does not have this feature enabled and wishes so, or if the feature is enabled but not working, please contact infrastructure at infrastruct...@apache.org or file a JIRA ticket with INFRA. ---
[jira] [Commented] (CLIMATE-456) Update DAP tests to use setupClass method for initialization
[ https://issues.apache.org/jira/browse/CLIMATE-456?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanelfocusedCommentId=14018203#comment-14018203 ] ASF GitHub Bot commented on CLIMATE-456: Github user asfgit closed the pull request at: https://github.com/apache/climate/pull/59 Update DAP tests to use setupClass method for initialization Key: CLIMATE-456 URL: https://issues.apache.org/jira/browse/CLIMATE-456 Project: Apache Open Climate Workbench Issue Type: Improvement Components: general Affects Versions: 0.3-incubating Reporter: Michael Joyce Assignee: Michael Joyce Fix For: 0.4 Move any class-wide OpenDAP test initialization into the setup_class method. -- This message was sent by Atlassian JIRA (v6.2#6252)
[jira] [Commented] (CLIMATE-452) Add Ubuntu Unity desktop install option to OCW VM build
[ https://issues.apache.org/jira/browse/CLIMATE-452?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanelfocusedCommentId=14018204#comment-14018204 ] ASF GitHub Bot commented on CLIMATE-452: Github user asfgit closed the pull request at: https://github.com/apache/climate/pull/54 Add Ubuntu Unity desktop install option to OCW VM build --- Key: CLIMATE-452 URL: https://issues.apache.org/jira/browse/CLIMATE-452 Project: Apache Open Climate Workbench Issue Type: Improvement Components: build process Affects Versions: 0.3-incubating Environment: OCW VM Vagrant build Reporter: Michael Joyce Assignee: Michael Joyce Fix For: 0.4 It would be nice to add some alternative desktop options to the Vagrant build. At the very least, options for the Ubuntu Unity desktop would be great. -- This message was sent by Atlassian JIRA (v6.2#6252)
[jira] [Commented] (CLIMATE-453) Add Taylor Diagram example
[ https://issues.apache.org/jira/browse/CLIMATE-453?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanelfocusedCommentId=14018206#comment-14018206 ] ASF GitHub Bot commented on CLIMATE-453: Github user asfgit closed the pull request at: https://github.com/apache/climate/pull/55 Add Taylor Diagram example -- Key: CLIMATE-453 URL: https://issues.apache.org/jira/browse/CLIMATE-453 Project: Apache Open Climate Workbench Issue Type: Improvement Components: general Affects Versions: 0.3-incubating Reporter: Michael Joyce Assignee: Michael Joyce Fix For: 0.4 Add a simple example of using the toolkit to generate a Taylor diagram. -- This message was sent by Atlassian JIRA (v6.2#6252)
[jira] [Commented] (CLIMATE-458) Add OCW UI setup to VM build
[ https://issues.apache.org/jira/browse/CLIMATE-458?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanelfocusedCommentId=14018211#comment-14018211 ] ASF GitHub Bot commented on CLIMATE-458: Github user asfgit closed the pull request at: https://github.com/apache/climate/pull/61 Add OCW UI setup to VM build Key: CLIMATE-458 URL: https://issues.apache.org/jira/browse/CLIMATE-458 Project: Apache Open Climate Workbench Issue Type: Improvement Components: build process Affects Versions: 0.3-incubating Reporter: Michael Joyce Assignee: Michael Joyce Fix For: 0.4 There is some minor configuration necessary to get the UI running after a clean checkout of the codebase (such as symlinking the frontend code to the expected location for the backend). We should automate this with the VM build. -- This message was sent by Atlassian JIRA (v6.2#6252)
[jira] [Commented] (CLIMATE-459) Please create a DOAP file for your TLP
[ https://issues.apache.org/jira/browse/CLIMATE-459?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanelfocusedCommentId=14018214#comment-14018214 ] Cameron Goodale commented on CLIMATE-459: - Hey [~s...@apache.org], Has something changed/broken since https://issues.apache.org/jira/browse/CLIMATE-406 was resolved and closed? Thanks. Please create a DOAP file for your TLP -- Key: CLIMATE-459 URL: https://issues.apache.org/jira/browse/CLIMATE-459 Project: Apache Open Climate Workbench Issue Type: Task Reporter: Sebb Please can you set up a DOAP for your project and get it added to files.xml? Please see http://projects.apache.org/create.html Once you have created the DOAP and committed it to your source code repository, please submit it for inclusion in the Apache projects listing as per: http://projects.apache.org/create.html#submit Remember, if you ever move or rename the doap file in future, please ensure that files.xml is updated to point to the new location. Thanks! -- This message was sent by Atlassian JIRA (v6.2#6252)
[jira] [Resolved] (CLIMATE-454) VM Build does not copy dependency files to install directory
[ https://issues.apache.org/jira/browse/CLIMATE-454?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Michael Joyce resolved CLIMATE-454. --- Resolution: Fixed PR Merged VM Build does not copy dependency files to install directory Key: CLIMATE-454 URL: https://issues.apache.org/jira/browse/CLIMATE-454 Project: Apache Open Climate Workbench Issue Type: Bug Components: build process Affects Versions: 0.3-incubating Reporter: Michael Joyce Assignee: Michael Joyce Fix For: 0.4 CLIMATE-427 moved all the VM build dependencies for pip/conda into config files. The VM initialization fails to copy them over during the VM build which causes it to fail. -- This message was sent by Atlassian JIRA (v6.2#6252)
[jira] [Resolved] (CLIMATE-455) utils.reshape_monthly_to_annually should modify a copy of the passed dataset
[ https://issues.apache.org/jira/browse/CLIMATE-455?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Michael Joyce resolved CLIMATE-455. --- Resolution: Fixed PR Merged utils.reshape_monthly_to_annually should modify a copy of the passed dataset Key: CLIMATE-455 URL: https://issues.apache.org/jira/browse/CLIMATE-455 Project: Apache Open Climate Workbench Issue Type: Bug Components: general Affects Versions: 0.3-incubating Environment: The utils helpers reshape_monthly_to_annually currently modifies the dataset's values array instead of manipulating a copy of the data and returning that. Reporter: Michael Joyce Assignee: Michael Joyce Fix For: 0.4 -- This message was sent by Atlassian JIRA (v6.2#6252)
[jira] [Resolved] (CLIMATE-453) Add Taylor Diagram example
[ https://issues.apache.org/jira/browse/CLIMATE-453?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Michael Joyce resolved CLIMATE-453. --- Resolution: Fixed PR Merged Add Taylor Diagram example -- Key: CLIMATE-453 URL: https://issues.apache.org/jira/browse/CLIMATE-453 Project: Apache Open Climate Workbench Issue Type: Improvement Components: general Affects Versions: 0.3-incubating Reporter: Michael Joyce Assignee: Michael Joyce Fix For: 0.4 Add a simple example of using the toolkit to generate a Taylor diagram. -- This message was sent by Atlassian JIRA (v6.2#6252)
[jira] [Resolved] (CLIMATE-459) Please create a DOAP file for your TLP
[ https://issues.apache.org/jira/browse/CLIMATE-459?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Sebb resolved CLIMATE-459. -- Resolution: Duplicate Sorry, bug in script that checks for missing DOAPs. Please create a DOAP file for your TLP -- Key: CLIMATE-459 URL: https://issues.apache.org/jira/browse/CLIMATE-459 Project: Apache Open Climate Workbench Issue Type: Task Reporter: Sebb Please can you set up a DOAP for your project and get it added to files.xml? Please see http://projects.apache.org/create.html Once you have created the DOAP and committed it to your source code repository, please submit it for inclusion in the Apache projects listing as per: http://projects.apache.org/create.html#submit Remember, if you ever move or rename the doap file in future, please ensure that files.xml is updated to point to the new location. Thanks! -- This message was sent by Atlassian JIRA (v6.2#6252)
[jira] [Closed] (CLIMATE-459) Please create a DOAP file for your TLP
[ https://issues.apache.org/jira/browse/CLIMATE-459?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Sebb closed CLIMATE-459. Please create a DOAP file for your TLP -- Key: CLIMATE-459 URL: https://issues.apache.org/jira/browse/CLIMATE-459 Project: Apache Open Climate Workbench Issue Type: Task Reporter: Sebb Please can you set up a DOAP for your project and get it added to files.xml? Please see http://projects.apache.org/create.html Once you have created the DOAP and committed it to your source code repository, please submit it for inclusion in the Apache projects listing as per: http://projects.apache.org/create.html#submit Remember, if you ever move or rename the doap file in future, please ensure that files.xml is updated to point to the new location. Thanks! -- This message was sent by Atlassian JIRA (v6.2#6252)
[jira] [Assigned] (CLIMATE-241) Make old docstrings in plotter.py sphinx compliant
[ https://issues.apache.org/jira/browse/CLIMATE-241?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Michael Joyce reassigned CLIMATE-241: - Assignee: Michael Joyce (was: Alex Goodman) Make old docstrings in plotter.py sphinx compliant -- Key: CLIMATE-241 URL: https://issues.apache.org/jira/browse/CLIMATE-241 Project: Apache Open Climate Workbench Issue Type: Improvement Components: visualization Affects Versions: 0.2-incubating Reporter: Alex Goodman Assignee: Michael Joyce Fix For: 0.4 The old docstrings for the functions in plotter.py aren't compliant with sphinx and need to be updated. -- This message was sent by Atlassian JIRA (v6.2#6252)
[jira] [Updated] (CLIMATE-419) Add HUGE download button to main site
[ https://issues.apache.org/jira/browse/CLIMATE-419?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Michael Joyce updated CLIMATE-419: -- Assignee: (was: Andrew Hart) Add HUGE download button to main site -- Key: CLIMATE-419 URL: https://issues.apache.org/jira/browse/CLIMATE-419 Project: Apache Open Climate Workbench Issue Type: Improvement Components: website Affects Versions: 0.3-incubating Reporter: Lewis John McGibbney Priority: Critical Fix For: 0.4 This one is self explanatory... if people see a download link then they usually will and do. -- This message was sent by Atlassian JIRA (v6.2#6252)
[jira] [Updated] (CLIMATE-421) Add a download page for OCW
[ https://issues.apache.org/jira/browse/CLIMATE-421?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Michael Joyce updated CLIMATE-421: -- Assignee: (was: Andrew Hart) Add a download page for OCW --- Key: CLIMATE-421 URL: https://issues.apache.org/jira/browse/CLIMATE-421 Project: Apache Open Climate Workbench Issue Type: Improvement Components: website Affects Versions: 0.3-incubating Reporter: Lewis John McGibbney Priority: Blocker Fix For: 0.4 We really need a download page as oppose to a hard link to a download mirror. We need to provide signatures along with relevant downloads/releases. It is also extremely useful and generally good practice to provide advice/guidelines about checking artifacts against signatures. This is not difficult but helps a lot in the download process. -- This message was sent by Atlassian JIRA (v6.2#6252)
[jira] [Updated] (CLIMATE-418) Remove hard links to mailing lists
[ https://issues.apache.org/jira/browse/CLIMATE-418?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Michael Joyce updated CLIMATE-418: -- Assignee: (was: Andrew Hart) Remove hard links to mailing lists -- Key: CLIMATE-418 URL: https://issues.apache.org/jira/browse/CLIMATE-418 Project: Apache Open Climate Workbench Issue Type: Story Components: website Affects Versions: 0.3-incubating Reporter: Lewis John McGibbney Priority: Trivial Fix For: 0.4 Whoever is moderating this list must be in tears... Currently hard links on the mailing list page [0]. This is only attracting bots to spam us. We should remove these links. [0] http://climate.apache.org/community/mailing-lists.html -- This message was sent by Atlassian JIRA (v6.2#6252)
[jira] [Resolved] (CLIMATE-320) To make UI handle CMIP5 model outputs
[ https://issues.apache.org/jira/browse/CLIMATE-320?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Michael Joyce resolved CLIMATE-320. --- Resolution: Fixed I believe this has since been resolved. I'm going to close for now. If I'm mistaken please feel free to reopen! To make UI handle CMIP5 model outputs - Key: CLIMATE-320 URL: https://issues.apache.org/jira/browse/CLIMATE-320 Project: Apache Open Climate Workbench Issue Type: Bug Affects Versions: 0.3-incubating Reporter: Huikyo Lee Assignee: Huikyo Lee Priority: Trivial Fix For: 0.4 I added time format in /services/decode_model_times.py Some of CMIP5 model data use different time format from CORDEX RCMs. Also when there are more than 7 models, metrics_kyo crashes because it can draw only 8 sub-plots. The new revision now draws 12 sub-plots. -- This message was sent by Atlassian JIRA (v6.2#6252)
[jira] [Resolved] (CLIMATE-458) Add OCW UI setup to VM build
[ https://issues.apache.org/jira/browse/CLIMATE-458?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Michael Joyce resolved CLIMATE-458. --- Resolution: Fixed PR Merged Add OCW UI setup to VM build Key: CLIMATE-458 URL: https://issues.apache.org/jira/browse/CLIMATE-458 Project: Apache Open Climate Workbench Issue Type: Improvement Components: build process Affects Versions: 0.3-incubating Reporter: Michael Joyce Assignee: Michael Joyce Fix For: 0.4 There is some minor configuration necessary to get the UI running after a clean checkout of the codebase (such as symlinking the frontend code to the expected location for the backend). We should automate this with the VM build. -- This message was sent by Atlassian JIRA (v6.2#6252)
[jira] [Resolved] (CLIMATE-456) Update DAP tests to use setupClass method for initialization
[ https://issues.apache.org/jira/browse/CLIMATE-456?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Michael Joyce resolved CLIMATE-456. --- Resolution: Fixed PR Merged Update DAP tests to use setupClass method for initialization Key: CLIMATE-456 URL: https://issues.apache.org/jira/browse/CLIMATE-456 Project: Apache Open Climate Workbench Issue Type: Improvement Components: general Affects Versions: 0.3-incubating Reporter: Michael Joyce Assignee: Michael Joyce Fix For: 0.4 Move any class-wide OpenDAP test initialization into the setup_class method. -- This message was sent by Atlassian JIRA (v6.2#6252)
[jira] [Resolved] (CLIMATE-457) Clean up after Easy-OCW install on Ubuntu
[ https://issues.apache.org/jira/browse/CLIMATE-457?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Michael Joyce resolved CLIMATE-457. --- Resolution: Fixed PR Merged Clean up after Easy-OCW install on Ubuntu - Key: CLIMATE-457 URL: https://issues.apache.org/jira/browse/CLIMATE-457 Project: Apache Open Climate Workbench Issue Type: Improvement Components: build process Affects Versions: 0.3-incubating Environment: Ubuntu 12.04 Reporter: Michael Joyce Assignee: Michael Joyce Fix For: 0.4 Easy OCW does not cleanup after itself on Ubuntu. It leaves behind a number of downloads and files from the dependency installation (Anaconda Python, Basemap, etc.) that should be removed. -- This message was sent by Atlassian JIRA (v6.2#6252)
[jira] [Resolved] (CLIMATE-2) Refactor source code to use ASF package names
[ https://issues.apache.org/jira/browse/CLIMATE-2?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Michael Joyce resolved CLIMATE-2. - Resolution: Not a Problem All, Marking this as not a problem now. I went through the code base and I can't find any package names that need to be updated (this seemed to be referencing Java related things). If I overlooked something please re-open! Refactor source code to use ASF package names - Key: CLIMATE-2 URL: https://issues.apache.org/jira/browse/CLIMATE-2 Project: Apache Open Climate Workbench Issue Type: Task Components: general Affects Versions: 0.2-incubating Reporter: Suresh Marru Assignee: Chris A. Mattmann Fix For: 0.4 Change the JPL donated code packages to use org.apache.climate package names. -- This message was sent by Atlassian JIRA (v6.2#6252)
[jira] [Created] (CLIMATE-460) Drop old RCMET Webapp
Michael Joyce created CLIMATE-460: - Summary: Drop old RCMET Webapp Key: CLIMATE-460 URL: https://issues.apache.org/jira/browse/CLIMATE-460 Project: Apache Open Climate Workbench Issue Type: Task Components: general Affects Versions: 0.3-incubating Environment: The old RCMET website (from JPL) is still in the code base at /rcmet/src/main/webapp. This is no longer support and has long since been replaced with the OCW-UI component. I'm going to drop this from the code base. Reporter: Michael Joyce Assignee: Michael Joyce Fix For: 0.4 -- This message was sent by Atlassian JIRA (v6.2#6252)
[jira] [Updated] (CLIMATE-460) Drop old RCMET Webapp
[ https://issues.apache.org/jira/browse/CLIMATE-460?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Michael Joyce updated CLIMATE-460: -- Description: The old RCMET website (from JPL) is still in the code base at /rcmet/src/main/webapp. This is no longer support and has long since been replaced with the OCW-UI component. I'm going to drop this from the code base. Environment: (was: The old RCMET website (from JPL) is still in the code base at /rcmet/src/main/webapp. This is no longer support and has long since been replaced with the OCW-UI component. I'm going to drop this from the code base.) Drop old RCMET Webapp - Key: CLIMATE-460 URL: https://issues.apache.org/jira/browse/CLIMATE-460 Project: Apache Open Climate Workbench Issue Type: Task Components: general Affects Versions: 0.3-incubating Reporter: Michael Joyce Assignee: Michael Joyce Fix For: 0.4 The old RCMET website (from JPL) is still in the code base at /rcmet/src/main/webapp. This is no longer support and has long since been replaced with the OCW-UI component. I'm going to drop this from the code base. -- This message was sent by Atlassian JIRA (v6.2#6252)
[jira] [Created] (CLIMATE-461) Drop old RCMET VM
Michael Joyce created CLIMATE-461: - Summary: Drop old RCMET VM Key: CLIMATE-461 URL: https://issues.apache.org/jira/browse/CLIMATE-461 Project: Apache Open Climate Workbench Issue Type: Task Components: general Affects Versions: 0.3-incubating Reporter: Michael Joyce Assignee: Michael Joyce Fix For: 0.4 There is an older VM build in /rcmet/src/main/vm As far as I know, this has been completely replaced by the OCW VM. I'm going to drop this from the code base. Please review and let me know if I'm overlooking something here! -- This message was sent by Atlassian JIRA (v6.2#6252)
[jira] [Commented] (CLIMATE-460) Drop old RCMET Webapp
[ https://issues.apache.org/jira/browse/CLIMATE-460?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanelfocusedCommentId=14018263#comment-14018263 ] ASF GitHub Bot commented on CLIMATE-460: GitHub user MJJoyce opened a pull request: https://github.com/apache/climate/pull/62 CLIMATE-460 - Remove old RCMET Webapp You can merge this pull request into a Git repository by running: $ git pull https://github.com/MJJoyce/climate CLIMATE-460 Alternatively you can review and apply these changes as the patch at: https://github.com/apache/climate/pull/62.patch To close this pull request, make a commit to your master/trunk branch with (at least) the following in the commit message: This closes #62 commit 65e8bcf55c9518d0e8090eaa5b8656e80dfed47c Author: Michael Joyce jo...@apache.org Date: 2014-06-04T22:07:31Z CLIMATE-460 - Remove old RCMET Webapp Drop old RCMET Webapp - Key: CLIMATE-460 URL: https://issues.apache.org/jira/browse/CLIMATE-460 Project: Apache Open Climate Workbench Issue Type: Task Components: general Affects Versions: 0.3-incubating Reporter: Michael Joyce Assignee: Michael Joyce Fix For: 0.4 The old RCMET website (from JPL) is still in the code base at /rcmet/src/main/webapp. This is no longer supported and has long since been replaced with the OCW-UI component. I'm going to drop this from the code base. -- This message was sent by Atlassian JIRA (v6.2#6252)
[jira] [Commented] (CLIMATE-460) Drop old RCMET Webapp
[ https://issues.apache.org/jira/browse/CLIMATE-460?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanelfocusedCommentId=14018264#comment-14018264 ] ASF GitHub Bot commented on CLIMATE-460: Github user OCWJenkins commented on the pull request: https://github.com/apache/climate/pull/62#issuecomment-45158663 Merged build triggered. Test Failed. Drop old RCMET Webapp - Key: CLIMATE-460 URL: https://issues.apache.org/jira/browse/CLIMATE-460 Project: Apache Open Climate Workbench Issue Type: Task Components: general Affects Versions: 0.3-incubating Reporter: Michael Joyce Assignee: Michael Joyce Fix For: 0.4 The old RCMET website (from JPL) is still in the code base at /rcmet/src/main/webapp. This is no longer supported and has long since been replaced with the OCW-UI component. I'm going to drop this from the code base. -- This message was sent by Atlassian JIRA (v6.2#6252)
[GitHub] climate pull request: CLIMATE-461 - Remove old RCMET VM
Github user OCWJenkins commented on the pull request: https://github.com/apache/climate/pull/63#issuecomment-45158857 Merged build triggered. Test Failed. --- If your project is set up for it, you can reply to this email and have your reply appear on GitHub as well. If your project does not have this feature enabled and wishes so, or if the feature is enabled but not working, please contact infrastructure at infrastruct...@apache.org or file a JIRA ticket with INFRA. ---
[GitHub] climate pull request: CLIMATE-461 - Remove old RCMET VM
Github user OCWJenkins commented on the pull request: https://github.com/apache/climate/pull/63#issuecomment-45158866 Merged build started. Test Failed. --- If your project is set up for it, you can reply to this email and have your reply appear on GitHub as well. If your project does not have this feature enabled and wishes so, or if the feature is enabled but not working, please contact infrastructure at infrastruct...@apache.org or file a JIRA ticket with INFRA. ---
[jira] [Commented] (CLIMATE-460) Drop old RCMET Webapp
[ https://issues.apache.org/jira/browse/CLIMATE-460?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanelfocusedCommentId=14018267#comment-14018267 ] ASF GitHub Bot commented on CLIMATE-460: Github user OCWJenkins commented on the pull request: https://github.com/apache/climate/pull/62#issuecomment-45158750 Merged build finished. Test Passed. Drop old RCMET Webapp - Key: CLIMATE-460 URL: https://issues.apache.org/jira/browse/CLIMATE-460 Project: Apache Open Climate Workbench Issue Type: Task Components: general Affects Versions: 0.3-incubating Reporter: Michael Joyce Assignee: Michael Joyce Fix For: 0.4 The old RCMET website (from JPL) is still in the code base at /rcmet/src/main/webapp. This is no longer supported and has long since been replaced with the OCW-UI component. I'm going to drop this from the code base. -- This message was sent by Atlassian JIRA (v6.2#6252)
[jira] [Commented] (CLIMATE-460) Drop old RCMET Webapp
[ https://issues.apache.org/jira/browse/CLIMATE-460?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanelfocusedCommentId=14018265#comment-14018265 ] ASF GitHub Bot commented on CLIMATE-460: Github user OCWJenkins commented on the pull request: https://github.com/apache/climate/pull/62#issuecomment-45158667 Merged build started. Test Failed. Drop old RCMET Webapp - Key: CLIMATE-460 URL: https://issues.apache.org/jira/browse/CLIMATE-460 Project: Apache Open Climate Workbench Issue Type: Task Components: general Affects Versions: 0.3-incubating Reporter: Michael Joyce Assignee: Michael Joyce Fix For: 0.4 The old RCMET website (from JPL) is still in the code base at /rcmet/src/main/webapp. This is no longer supported and has long since been replaced with the OCW-UI component. I'm going to drop this from the code base. -- This message was sent by Atlassian JIRA (v6.2#6252)
[jira] [Commented] (CLIMATE-461) Drop old RCMET VM
[ https://issues.apache.org/jira/browse/CLIMATE-461?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanelfocusedCommentId=14018271#comment-14018271 ] ASF GitHub Bot commented on CLIMATE-461: Github user OCWJenkins commented on the pull request: https://github.com/apache/climate/pull/63#issuecomment-45158866 Merged build started. Test Failed. Drop old RCMET VM - Key: CLIMATE-461 URL: https://issues.apache.org/jira/browse/CLIMATE-461 Project: Apache Open Climate Workbench Issue Type: Task Components: general Affects Versions: 0.3-incubating Reporter: Michael Joyce Assignee: Michael Joyce Fix For: 0.4 There is an older VM build in /rcmet/src/main/vm As far as I know, this has been completely replaced by the OCW VM. I'm going to drop this from the code base. Please review and let me know if I'm overlooking something here! -- This message was sent by Atlassian JIRA (v6.2#6252)
[jira] [Commented] (CLIMATE-461) Drop old RCMET VM
[ https://issues.apache.org/jira/browse/CLIMATE-461?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanelfocusedCommentId=14018272#comment-14018272 ] ASF GitHub Bot commented on CLIMATE-461: Github user OCWJenkins commented on the pull request: https://github.com/apache/climate/pull/63#issuecomment-45158934 Merged build finished. Test Passed. Drop old RCMET VM - Key: CLIMATE-461 URL: https://issues.apache.org/jira/browse/CLIMATE-461 Project: Apache Open Climate Workbench Issue Type: Task Components: general Affects Versions: 0.3-incubating Reporter: Michael Joyce Assignee: Michael Joyce Fix For: 0.4 There is an older VM build in /rcmet/src/main/vm As far as I know, this has been completely replaced by the OCW VM. I'm going to drop this from the code base. Please review and let me know if I'm overlooking something here! -- This message was sent by Atlassian JIRA (v6.2#6252)
[jira] [Commented] (CLIMATE-461) Drop old RCMET VM
[ https://issues.apache.org/jira/browse/CLIMATE-461?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanelfocusedCommentId=14018270#comment-14018270 ] ASF GitHub Bot commented on CLIMATE-461: Github user OCWJenkins commented on the pull request: https://github.com/apache/climate/pull/63#issuecomment-45158857 Merged build triggered. Test Failed. Drop old RCMET VM - Key: CLIMATE-461 URL: https://issues.apache.org/jira/browse/CLIMATE-461 Project: Apache Open Climate Workbench Issue Type: Task Components: general Affects Versions: 0.3-incubating Reporter: Michael Joyce Assignee: Michael Joyce Fix For: 0.4 There is an older VM build in /rcmet/src/main/vm As far as I know, this has been completely replaced by the OCW VM. I'm going to drop this from the code base. Please review and let me know if I'm overlooking something here! -- This message was sent by Atlassian JIRA (v6.2#6252)
Re: Model Observation Evaluation exmaple
Hay Mazi, I'm checking this out on the OCW list. It looks like your plot got dropped. Could you upload it somewhere and provide a link for us? Cheers! -- Joyce On Wed, Jun 4, 2014 at 3:12 PM, Boustani, Maziyar (398F) maziyar.boust...@jpl.nasa.gov wrote: Hi Paul and Alex, I ran a test code to evaluate one model [1] with one observation[2]. You can find the result as attached. This has been temporally regrided for 356 day, so we going to have 5 years of data and that is why we have 5 plots. Do you guys thinks this is correct to have one plot for each time or it should be one plot for entire time? Metric = Bias parameter_id = 38 dataset_id = 10 min_lat = 0 max_lat = 20 min_lon = 0 max_lon = 20 start_time = 2000-01-01 00:00:00 end_time = 2004-12-01 00:00:00 [1] : AFRICA_UQAM-CRCM5_CTL_ERAINT_MM_50km_1989-2008_tas.nc (variable = TAS) [2] : CRU3.1 Daily-Mean Temperature (parmeter_id = 38) Maziyar Boustani Software Engineer - GIS Developer Science Data Understanding Group Jet Propulsion Laboratory, California Institute of Technology 4800 Oak Grove Drive, Pasadena, CA, 91109 maziyar.boust...@jpl.nasa.gov
[jira] [Commented] (CLIMATE-451) Getting Errors in virtualenv wrapper after running easy-ocw/install-osx.sh
[
https://issues.apache.org/jira/browse/CLIMATE-451?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanelfocusedCommentId=14018280#comment-14018280
]
ASF GitHub Bot commented on CLIMATE-451:
Github user MJJoyce commented on the pull request:
https://github.com/apache/climate/pull/57#issuecomment-45159705
:+1: Cam
Looks great. Thanks for all the hard work on this. I know it was a bit
painful ;)
Getting Errors in virtualenv wrapper after running easy-ocw/install-osx.sh
---
Key: CLIMATE-451
URL: https://issues.apache.org/jira/browse/CLIMATE-451
Project: Apache Open Climate Workbench
Issue Type: Bug
Components: build process
Affects Versions: 0.3-incubating
Environment: OS X 10.8.5
Reporter: Cameron Goodale
Assignee: Cameron Goodale
Fix For: 0.4
Original Estimate: 3h
Remaining Estimate: 3h
I am able to use the install-osx.sh script to install a new 'ocw' virtual
env, but when I try to switch into the virtualenv using the 'workon' command
I get this error:
{code}
$ workon ocw
-bash: virtualenv_deactivate: command not found
Error: could not find environment: ocw
-bash: [: ==: unary operator expected
{code}
Also I noticed that when I run the 'lsvirtualenv' command I get the following
error:
{code}
$ lsvirtualenv
ocw
===
Error: did not expect more than one argument.
showvirtualenv [env]
{code}
After some googling I think the error message is actually coming from conda's
cli activate.py script.
https://github.com/conda/conda/blob/master/conda/cli/activate.py (See lines
53 and 95)
Need to work on this a little more to sort out this bug.
--
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(v6.2#6252)
Re: Model Observation Evaluation exmaple
Hi Mazi, This should be one plot total. When you compute a bias, conventionally it's just one bias for the entire time period so there should be one plot. You could have multiple plots if you were computing the bias for all 4 seasons, but for annual there should only be one. When you say you temporally regridded to 365 days, what do you mean by this? The model and obs data are monthly, correct? So shouldn't you just be computing the mean difference between the obs and the model? Please let me know if you need further clarification. Thanks, Paul From: Boustani, Maziyar (398F) maziyar.boust...@jpl.nasa.govmailto:maziyar.boust...@jpl.nasa.gov Date: Wednesday, June 4, 2014 3:12 PM To: Paul Loikith paul.c.loik...@jpl.nasa.govmailto:paul.c.loik...@jpl.nasa.gov, good...@apache.orgmailto:good...@apache.org good...@apache.orgmailto:good...@apache.org Cc: dev@climate.apache.orgmailto:dev@climate.apache.org dev@climate.apache.orgmailto:dev@climate.apache.org Subject: Model Observation Evaluation exmaple Hi Paul and Alex, I ran a test code to evaluate one model [1] with one observation[2]. You can find the result as attached. This has been temporally regrided for 356 day, so we going to have 5 years of data and that is why we have 5 plots. Do you guys thinks this is correct to have one plot for each time or it should be one plot for entire time? Metric = Bias parameter_id = 38 dataset_id = 10 min_lat = 0 max_lat = 20 min_lon = 0 max_lon = 20 start_time = 2000-01-01 00:00:00 end_time = 2004-12-01 00:00:00 [1] : AFRICA_UQAM-CRCM5_CTL_ERAINT_MM_50km_1989-2008_tas.nc (variable = TAS) [2] : CRU3.1 Daily-Mean Temperature (parmeter_id = 38) [cid:03DF99EA-3331-4A42-974E-7131165A8C00] Maziyar Boustani Software Engineer - GIS Developer Science Data Understanding Group Jet Propulsion Laboratory, California Institute of Technology 4800 Oak Grove Drive, Pasadena, CA, 91109 maziyar.boust...@jpl.nasa.govmailto:maziyar.boust...@jpl.nasa.gov
[jira] [Commented] (CLIMATE-451) Getting Errors in virtualenv wrapper after running easy-ocw/install-osx.sh
[
https://issues.apache.org/jira/browse/CLIMATE-451?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanelfocusedCommentId=14018293#comment-14018293
]
ASF GitHub Bot commented on CLIMATE-451:
Github user asfgit closed the pull request at:
https://github.com/apache/climate/pull/57
Getting Errors in virtualenv wrapper after running easy-ocw/install-osx.sh
---
Key: CLIMATE-451
URL: https://issues.apache.org/jira/browse/CLIMATE-451
Project: Apache Open Climate Workbench
Issue Type: Bug
Components: build process
Affects Versions: 0.3-incubating
Environment: OS X 10.8.5
Reporter: Cameron Goodale
Assignee: Cameron Goodale
Fix For: 0.4
Original Estimate: 3h
Remaining Estimate: 3h
I am able to use the install-osx.sh script to install a new 'ocw' virtual
env, but when I try to switch into the virtualenv using the 'workon' command
I get this error:
{code}
$ workon ocw
-bash: virtualenv_deactivate: command not found
Error: could not find environment: ocw
-bash: [: ==: unary operator expected
{code}
Also I noticed that when I run the 'lsvirtualenv' command I get the following
error:
{code}
$ lsvirtualenv
ocw
===
Error: did not expect more than one argument.
showvirtualenv [env]
{code}
After some googling I think the error message is actually coming from conda's
cli activate.py script.
https://github.com/conda/conda/blob/master/conda/cli/activate.py (See lines
53 and 95)
Need to work on this a little more to sort out this bug.
--
This message was sent by Atlassian JIRA
(v6.2#6252)
[GitHub] climate pull request: CLIMATE-451 - Remove virtualenvwrapper from ...
Github user asfgit closed the pull request at: https://github.com/apache/climate/pull/57 --- If your project is set up for it, you can reply to this email and have your reply appear on GitHub as well. If your project does not have this feature enabled and wishes so, or if the feature is enabled but not working, please contact infrastructure at infrastruct...@apache.org or file a JIRA ticket with INFRA. ---
Re: Model Observation Evaluation exmaple
Here is the attached [1]. [1]: http://oi58.tinypic.com/w7yo2q.jpg Maziyar Boustani Software Engineer - GIS Developer Science Data Understanding Group Jet Propulsion Laboratory, California Institute of Technology 4800 Oak Grove Drive, Pasadena, CA, 91109 maziyar.boust...@jpl.nasa.govmailto:maziyar.boust...@jpl.nasa.gov On Jun 4, 2014, at 3:35 PM, Loikith, Paul C (329C-Affiliate) wrote: Hi Mazi, This should be one plot total. When you compute a bias, conventionally it's just one bias for the entire time period so there should be one plot. You could have multiple plots if you were computing the bias for all 4 seasons, but for annual there should only be one. When you say you temporally regridded to 365 days, what do you mean by this? The model and obs data are monthly, correct? So shouldn't you just be computing the mean difference between the obs and the model? Please let me know if you need further clarification. Thanks, Paul From: Boustani, Maziyar (398F) maziyar.boust...@jpl.nasa.govmailto:maziyar.boust...@jpl.nasa.gov Date: Wednesday, June 4, 2014 3:12 PM To: Paul Loikith paul.c.loik...@jpl.nasa.govmailto:paul.c.loik...@jpl.nasa.gov, good...@apache.orgmailto:good...@apache.org good...@apache.orgmailto:good...@apache.org Cc: dev@climate.apache.orgmailto:dev@climate.apache.org dev@climate.apache.orgmailto:dev@climate.apache.org Subject: Model Observation Evaluation exmaple Hi Paul and Alex, I ran a test code to evaluate one model [1] with one observation[2]. You can find the result as attached. This has been temporally regrided for 356 day, so we going to have 5 years of data and that is why we have 5 plots. Do you guys thinks this is correct to have one plot for each time or it should be one plot for entire time? Metric = Bias parameter_id = 38 dataset_id = 10 min_lat = 0 max_lat = 20 min_lon = 0 max_lon = 20 start_time = 2000-01-01 00:00:00 end_time = 2004-12-01 00:00:00 [1] : AFRICA_UQAM-CRCM5_CTL_ERAINT_MM_50km_1989-2008_tas.nc (variable = TAS) [2] : CRU3.1 Daily-Mean Temperature (parmeter_id = 38) model_vs_obs_bias.png Maziyar Boustani Software Engineer - GIS Developer Science Data Understanding Group Jet Propulsion Laboratory, California Institute of Technology 4800 Oak Grove Drive, Pasadena, CA, 91109 maziyar.boust...@jpl.nasa.govmailto:maziyar.boust...@jpl.nasa.gov model_vs_obs_bias.png
Re: Model Observation Evaluation exmaple
Hi Mazi, I am in agreement with Paul. It is also clear from a quick inspection of your plots that the model bias for each year is identical, so plotting just the 5-year average bias would give you sufficient information. You might want to take a quick glance at IPCC AR5 WG I, Ch. 9 [1] for some good examples. Thanks, Alex [1] - http://www.climatechange2013.org/images/report/WG1AR5_Chapter09_FINAL.pdf On Wed, Jun 4, 2014 at 4:48 PM, Boustani, Maziyar (398F) maziyar.boust...@jpl.nasa.gov wrote: Here is the attached [1]. [1]: http://oi58.tinypic.com/w7yo2q.jpg Maziyar Boustani Software Engineer - GIS Developer Science Data Understanding Group Jet Propulsion Laboratory, California Institute of Technology 4800 Oak Grove Drive, Pasadena, CA, 91109 maziyar.boust...@jpl.nasa.gov On Jun 4, 2014, at 3:35 PM, Loikith, Paul C (329C-Affiliate) wrote: Hi Mazi, This should be one plot total. When you compute a bias, conventionally it's just one bias for the entire time period so there should be one plot. You could have multiple plots if you were computing the bias for all 4 seasons, but for annual there should only be one. When you say you temporally regridded to 365 days, what do you mean by this? The model and obs data are monthly, correct? So shouldn't you just be computing the mean difference between the obs and the model? Please let me know if you need further clarification. Thanks, Paul From: Boustani, Maziyar (398F) maziyar.boust...@jpl.nasa.gov Date: Wednesday, June 4, 2014 3:12 PM To: Paul Loikith paul.c.loik...@jpl.nasa.gov, good...@apache.org good...@apache.org Cc: dev@climate.apache.org dev@climate.apache.org Subject: Model Observation Evaluation exmaple Hi Paul and Alex, I ran a test code to evaluate one model [1] with one observation[2]. You can find the result as attached. This has been temporally regrided for 356 day, so we going to have 5 years of data and that is why we have 5 plots. Do you guys thinks this is correct to have one plot for each time or it should be one plot for entire time? Metric = Bias parameter_id = 38 dataset_id = 10 min_lat = 0 max_lat = 20 min_lon = 0 max_lon = 20 start_time = 2000-01-01 00:00:00 end_time = 2004-12-01 00:00:00 [1] : AFRICA_UQAM-CRCM5_CTL_ERAINT_MM_50km_1989-2008_tas.nc (variable = TAS) [2] : CRU3.1 Daily-Mean Temperature (parmeter_id = 38) model_vs_obs_bias.png Maziyar Boustani Software Engineer - GIS Developer Science Data Understanding Group Jet Propulsion Laboratory, California Institute of Technology 4800 Oak Grove Drive, Pasadena, CA, 91109 maziyar.boust...@jpl.nasa.gov model_vs_obs_bias.png -- Alex Goodman Graduate Research Assistant Department of Atmospheric Science Colorado State University
Re: Model Observation Evaluation exmaple
Hi Alex, Just to clarify…wouldn't you always be plotting the 5-year average bias when computing a bias for a 5-year climatology? It looks like the bias is systematic for the 5 years, but not identical. Paul From: Alex Goodman alex.good...@colostate.edumailto:alex.good...@colostate.edu Date: Wednesday, June 4, 2014 3:53 PM To: Boustani, Maziyar (398F) maziyar.boust...@jpl.nasa.govmailto:maziyar.boust...@jpl.nasa.gov Cc: Paul Loikith paul.c.loik...@jpl.nasa.govmailto:paul.c.loik...@jpl.nasa.gov, dev@climate.apache.orgmailto:dev@climate.apache.org dev@climate.apache.orgmailto:dev@climate.apache.org Subject: Re: Model Observation Evaluation exmaple Hi Mazi, I am in agreement with Paul. It is also clear from a quick inspection of your plots that the model bias for each year is identical, so plotting just the 5-year average bias would give you sufficient information. You might want to take a quick glance at IPCC AR5 WG I, Ch. 9 [1] for some good examples. Thanks, Alex [1] - http://www.climatechange2013.org/images/report/WG1AR5_Chapter09_FINAL.pdf On Wed, Jun 4, 2014 at 4:48 PM, Boustani, Maziyar (398F) maziyar.boust...@jpl.nasa.govmailto:maziyar.boust...@jpl.nasa.gov wrote: Here is the attached [1]. [1]: http://oi58.tinypic.com/w7yo2q.jpg Maziyar Boustani Software Engineer - GIS Developer Science Data Understanding Group Jet Propulsion Laboratory, California Institute of Technology 4800 Oak Grove Drive, Pasadena, CA, 91109 maziyar.boust...@jpl.nasa.govmailto:maziyar.boust...@jpl.nasa.gov On Jun 4, 2014, at 3:35 PM, Loikith, Paul C (329C-Affiliate) wrote: Hi Mazi, This should be one plot total. When you compute a bias, conventionally it's just one bias for the entire time period so there should be one plot. You could have multiple plots if you were computing the bias for all 4 seasons, but for annual there should only be one. When you say you temporally regridded to 365 days, what do you mean by this? The model and obs data are monthly, correct? So shouldn't you just be computing the mean difference between the obs and the model? Please let me know if you need further clarification. Thanks, Paul From: Boustani, Maziyar (398F) maziyar.boust...@jpl.nasa.govmailto:maziyar.boust...@jpl.nasa.gov Date: Wednesday, June 4, 2014 3:12 PM To: Paul Loikith paul.c.loik...@jpl.nasa.govmailto:paul.c.loik...@jpl.nasa.gov, good...@apache.orgmailto:good...@apache.org good...@apache.orgmailto:good...@apache.org Cc: dev@climate.apache.orgmailto:dev@climate.apache.org dev@climate.apache.orgmailto:dev@climate.apache.org Subject: Model Observation Evaluation exmaple Hi Paul and Alex, I ran a test code to evaluate one model [1] with one observation[2]. You can find the result as attached. This has been temporally regrided for 356 day, so we going to have 5 years of data and that is why we have 5 plots. Do you guys thinks this is correct to have one plot for each time or it should be one plot for entire time? Metric = Bias parameter_id = 38 dataset_id = 10 min_lat = 0 max_lat = 20 min_lon = 0 max_lon = 20 start_time = 2000-01-01 00:00:00 end_time = 2004-12-01 00:00:00 [1] : AFRICA_UQAM-CRCM5_CTL_ERAINT_MM_50km_1989-2008_tas.nc (variable = TAS) [2] : CRU3.1 Daily-Mean Temperature (parmeter_id = 38) model_vs_obs_bias.png Maziyar Boustani Software Engineer - GIS Developer Science Data Understanding Group Jet Propulsion Laboratory, California Institute of Technology 4800 Oak Grove Drive, Pasadena, CA, 91109 maziyar.boust...@jpl.nasa.govmailto:maziyar.boust...@jpl.nasa.gov model_vs_obs_bias.png -- Alex Goodman Graduate Research Assistant Department of Atmospheric Science Colorado State University
Re: Model Observation Evaluation exmaple
THanks guys, Alex, great to see you! ++ Chris Mattmann, Ph.D. Chief Architect Instrument Software and Science Data Systems Section (398) NASA Jet Propulsion Laboratory Pasadena, CA 91109 USA Office: 168-519, Mailstop: 168-527 Email: chris.a.mattm...@nasa.gov WWW: http://sunset.usc.edu/~mattmann/ ++ Adjunct Associate Professor, Computer Science Department University of Southern California, Los Angeles, CA 90089 USA ++ -Original Message- From: Alex Goodman alex.good...@colostate.edu Reply-To: dev@climate.apache.org dev@climate.apache.org Date: Wednesday, June 4, 2014 3:53 PM To: Boustani, Maziyar (398F) maziyar.boust...@jpl.nasa.gov Cc: Loikith, Paul C (329C-Affiliate) paul.c.loik...@jpl.nasa.gov, dev@climate.apache.org dev@climate.apache.org Subject: Re: Model Observation Evaluation exmaple Hi Mazi, I am in agreement with Paul. It is also clear from a quick inspection of your plots that the model bias for each year is identical, so plotting just the 5-year average bias would give you sufficient information. You might want to take a quick glance at IPCC AR5 WG I, Ch. 9 [1] for some good examples. Thanks, Alex [1] - http://www.climatechange2013.org/images/report/WG1AR5_Chapter09_FINAL.pdf On Wed, Jun 4, 2014 at 4:48 PM, Boustani, Maziyar (398F) maziyar.boust...@jpl.nasa.gov wrote: Here is the attached [1]. [1]: http://oi58.tinypic.com/w7yo2q.jpg Maziyar Boustani Software Engineer - GIS Developer Science Data Understanding Group Jet Propulsion Laboratory, California Institute of Technology 4800 Oak Grove Drive, Pasadena, CA, 91109 maziyar.boust...@jpl.nasa.gov On Jun 4, 2014, at 3:35 PM, Loikith, Paul C (329C-Affiliate) wrote: Hi Mazi, This should be one plot total. When you compute a bias, conventionally it's just one bias for the entire time period so there should be one plot. You could have multiple plots if you were computing the bias for all 4 seasons, but for annual there should only be one. When you say you temporally regridded to 365 days, what do you mean by this? The model and obs data are monthly, correct? So shouldn't you just be computing the mean difference between the obs and the model? Please let me know if you need further clarification. Thanks, Paul From: Boustani, Maziyar (398F) maziyar.boust...@jpl.nasa.gov Date: Wednesday, June 4, 2014 3:12 PM To: Paul Loikith paul.c.loik...@jpl.nasa.gov, good...@apache.org good...@apache.org Cc: dev@climate.apache.org dev@climate.apache.org Subject: Model Observation Evaluation exmaple Hi Paul and Alex, I ran a test code to evaluate one model [1] with one observation[2]. You can find the result as attached. This has been temporally regrided for 356 day, so we going to have 5 years of data and that is why we have 5 plots. Do you guys thinks this is correct to have one plot for each time or it should be one plot for entire time? Metric = Bias parameter_id = 38 dataset_id = 10 min_lat = 0 max_lat = 20 min_lon = 0 max_lon = 20 start_time = 2000-01-01 00:00:00 end_time = 2004-12-01 00:00:00 [1] : AFRICA_UQAM-CRCM5_CTL_ERAINT_MM_50km_1989-2008_tas.nc (variable = TAS) [2] : CRU3.1 Daily-Mean Temperature (parmeter_id = 38) model_vs_obs_bias.png Maziyar Boustani Software Engineer - GIS Developer Science Data Understanding Group Jet Propulsion Laboratory, California Institute of Technology 4800 Oak Grove Drive, Pasadena, CA, 91109 maziyar.boust...@jpl.nasa.gov model_vs_obs_bias.png -- Alex Goodman Graduate Research Assistant Department of Atmospheric Science Colorado State University
[jira] [Resolved] (CLIMATE-451) Getting Errors in virtualenv wrapper after running easy-ocw/install-osx.sh
[
https://issues.apache.org/jira/browse/CLIMATE-451?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel
]
Michael Joyce resolved CLIMATE-451.
---
Resolution: Fixed
PR Merged
Getting Errors in virtualenv wrapper after running easy-ocw/install-osx.sh
---
Key: CLIMATE-451
URL: https://issues.apache.org/jira/browse/CLIMATE-451
Project: Apache Open Climate Workbench
Issue Type: Bug
Components: build process
Affects Versions: 0.3-incubating
Environment: OS X 10.8.5
Reporter: Cameron Goodale
Assignee: Cameron Goodale
Fix For: 0.4
Original Estimate: 3h
Remaining Estimate: 3h
I am able to use the install-osx.sh script to install a new 'ocw' virtual
env, but when I try to switch into the virtualenv using the 'workon' command
I get this error:
{code}
$ workon ocw
-bash: virtualenv_deactivate: command not found
Error: could not find environment: ocw
-bash: [: ==: unary operator expected
{code}
Also I noticed that when I run the 'lsvirtualenv' command I get the following
error:
{code}
$ lsvirtualenv
ocw
===
Error: did not expect more than one argument.
showvirtualenv [env]
{code}
After some googling I think the error message is actually coming from conda's
cli activate.py script.
https://github.com/conda/conda/blob/master/conda/cli/activate.py (See lines
53 and 95)
Need to work on this a little more to sort out this bug.
--
This message was sent by Atlassian JIRA
(v6.2#6252)
[jira] [Created] (CLIMATE-462) Move Ubuntu Easy OCW install leftovers cleanup into VM build
Michael Joyce created CLIMATE-462: - Summary: Move Ubuntu Easy OCW install leftovers cleanup into VM build Key: CLIMATE-462 URL: https://issues.apache.org/jira/browse/CLIMATE-462 Project: Apache Open Climate Workbench Issue Type: Improvement Components: build process Affects Versions: 0.3-incubating Environment: Ubuntu 12.04 Reporter: Michael Joyce Assignee: Michael Joyce Fix For: 0.4 CLIMATE-457 added file cleanup to the Ubuntu 12.04 Easy Install script. When testing this in the VM I encountered a problem with permissions (even when this was run in the users' home dir oddly enough) with the removes. In an effort to remove as many necessary sudo calls from the Ubuntu side of Easy OCW I think we should move this to the VM initialization script. It will be one small step towards completely removing the sudo requirement from the Ubuntu install and place it in a less intrusive location since sudo in the VM is easy! -- This message was sent by Atlassian JIRA (v6.2#6252)
[GitHub] climate pull request: CLIMATE-462 - Move Ubuntu Easy OCW clean to ...
GitHub user MJJoyce opened a pull request: https://github.com/apache/climate/pull/64 CLIMATE-462 - Move Ubuntu Easy OCW clean to VM init script You can merge this pull request into a Git repository by running: $ git pull https://github.com/MJJoyce/climate CLIMATE-462 Alternatively you can review and apply these changes as the patch at: https://github.com/apache/climate/pull/64.patch To close this pull request, make a commit to your master/trunk branch with (at least) the following in the commit message: This closes #64 commit 6b1b0c41ec9d8815d04ca948edb65b6656939052 Author: Michael Joyce jo...@apache.org Date: 2014-06-05T02:55:51Z CLIMATE-462 - Move Ubuntu Easy OCW clean to VM init script --- If your project is set up for it, you can reply to this email and have your reply appear on GitHub as well. If your project does not have this feature enabled and wishes so, or if the feature is enabled but not working, please contact infrastructure at infrastruct...@apache.org or file a JIRA ticket with INFRA. ---
[GitHub] climate pull request: CLIMATE-462 - Move Ubuntu Easy OCW clean to ...
Github user OCWJenkins commented on the pull request: https://github.com/apache/climate/pull/64#issuecomment-45176320 Merged build triggered. Test Failed. --- If your project is set up for it, you can reply to this email and have your reply appear on GitHub as well. If your project does not have this feature enabled and wishes so, or if the feature is enabled but not working, please contact infrastructure at infrastruct...@apache.org or file a JIRA ticket with INFRA. ---
[GitHub] climate pull request: CLIMATE-462 - Move Ubuntu Easy OCW clean to ...
Github user OCWJenkins commented on the pull request: https://github.com/apache/climate/pull/64#issuecomment-45176330 Merged build started. Test Failed. --- If your project is set up for it, you can reply to this email and have your reply appear on GitHub as well. If your project does not have this feature enabled and wishes so, or if the feature is enabled but not working, please contact infrastructure at infrastruct...@apache.org or file a JIRA ticket with INFRA. ---
[GitHub] climate pull request: CLIMATE-462 - Move Ubuntu Easy OCW clean to ...
Github user OCWJenkins commented on the pull request: https://github.com/apache/climate/pull/64#issuecomment-45176375 Merged build finished. Test Passed. --- If your project is set up for it, you can reply to this email and have your reply appear on GitHub as well. If your project does not have this feature enabled and wishes so, or if the feature is enabled but not working, please contact infrastructure at infrastruct...@apache.org or file a JIRA ticket with INFRA. ---
[jira] [Commented] (CLIMATE-462) Move Ubuntu Easy OCW install leftovers cleanup into VM build
[ https://issues.apache.org/jira/browse/CLIMATE-462?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanelfocusedCommentId=14018437#comment-14018437 ] ASF GitHub Bot commented on CLIMATE-462: Github user OCWJenkins commented on the pull request: https://github.com/apache/climate/pull/64#issuecomment-45176330 Merged build started. Test Failed. Move Ubuntu Easy OCW install leftovers cleanup into VM build Key: CLIMATE-462 URL: https://issues.apache.org/jira/browse/CLIMATE-462 Project: Apache Open Climate Workbench Issue Type: Improvement Components: build process Affects Versions: 0.3-incubating Environment: Ubuntu 12.04 Reporter: Michael Joyce Assignee: Michael Joyce Fix For: 0.4 CLIMATE-457 added file cleanup to the Ubuntu 12.04 Easy Install script. When testing this in the VM I encountered a problem with permissions (even when this was run in the users' home dir oddly enough) with the removes. In an effort to remove as many necessary sudo calls from the Ubuntu side of Easy OCW I think we should move this to the VM initialization script. It will be one small step towards completely removing the sudo requirement from the Ubuntu install and place it in a less intrusive location since sudo in the VM is easy! -- This message was sent by Atlassian JIRA (v6.2#6252)
[jira] [Commented] (CLIMATE-462) Move Ubuntu Easy OCW install leftovers cleanup into VM build
[ https://issues.apache.org/jira/browse/CLIMATE-462?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanelfocusedCommentId=14018435#comment-14018435 ] ASF GitHub Bot commented on CLIMATE-462: Github user OCWJenkins commented on the pull request: https://github.com/apache/climate/pull/64#issuecomment-45176320 Merged build triggered. Test Failed. Move Ubuntu Easy OCW install leftovers cleanup into VM build Key: CLIMATE-462 URL: https://issues.apache.org/jira/browse/CLIMATE-462 Project: Apache Open Climate Workbench Issue Type: Improvement Components: build process Affects Versions: 0.3-incubating Environment: Ubuntu 12.04 Reporter: Michael Joyce Assignee: Michael Joyce Fix For: 0.4 CLIMATE-457 added file cleanup to the Ubuntu 12.04 Easy Install script. When testing this in the VM I encountered a problem with permissions (even when this was run in the users' home dir oddly enough) with the removes. In an effort to remove as many necessary sudo calls from the Ubuntu side of Easy OCW I think we should move this to the VM initialization script. It will be one small step towards completely removing the sudo requirement from the Ubuntu install and place it in a less intrusive location since sudo in the VM is easy! -- This message was sent by Atlassian JIRA (v6.2#6252)
[jira] [Commented] (CLIMATE-462) Move Ubuntu Easy OCW install leftovers cleanup into VM build
[ https://issues.apache.org/jira/browse/CLIMATE-462?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanelfocusedCommentId=14018438#comment-14018438 ] ASF GitHub Bot commented on CLIMATE-462: Github user OCWJenkins commented on the pull request: https://github.com/apache/climate/pull/64#issuecomment-45176375 Merged build finished. Test Passed. Move Ubuntu Easy OCW install leftovers cleanup into VM build Key: CLIMATE-462 URL: https://issues.apache.org/jira/browse/CLIMATE-462 Project: Apache Open Climate Workbench Issue Type: Improvement Components: build process Affects Versions: 0.3-incubating Environment: Ubuntu 12.04 Reporter: Michael Joyce Assignee: Michael Joyce Fix For: 0.4 CLIMATE-457 added file cleanup to the Ubuntu 12.04 Easy Install script. When testing this in the VM I encountered a problem with permissions (even when this was run in the users' home dir oddly enough) with the removes. In an effort to remove as many necessary sudo calls from the Ubuntu side of Easy OCW I think we should move this to the VM initialization script. It will be one small step towards completely removing the sudo requirement from the Ubuntu install and place it in a less intrusive location since sudo in the VM is easy! -- This message was sent by Atlassian JIRA (v6.2#6252)
[GitHub] climate pull request: CLIMATE-462 - Move Ubuntu Easy OCW clean to ...
Github user asfgit closed the pull request at: https://github.com/apache/climate/pull/64 --- If your project is set up for it, you can reply to this email and have your reply appear on GitHub as well. If your project does not have this feature enabled and wishes so, or if the feature is enabled but not working, please contact infrastructure at infrastruct...@apache.org or file a JIRA ticket with INFRA. ---
Re: Model Observation Evaluation exmaple
Hi Mazi, We do not have to make the new metric from scratch. As I told you two weeks ago, someone just needs to reform the following function that Kim and I updated last year. --- def calcClimSeason(monthBegin, monthEnd, dataset1): ''' Purpose :: Calculate seasonal mean montheries and climatology for both 3-D and point time series. For example, to calculate DJF mean time series, monthBegin = 12, monthEnd =2 This can handle monthBegin=monthEnd i.e. for climatology of a specific month Input:: monthBegin - an integer for the beginning month (Jan =1) monthEnd - an integer for the ending month (Jan = 1) dataset1 - 3d numpy array of data in (t,lat,lon) or 1d numpy array montheries Output:: tSeries - if 3d numpy was entered, 3d (number of years/number of years -1 if monthBegin monthEnd,lat,lon), if 1d data entered it is a montheries of the data of length number of years means - if 3d numpy was entered, 2d (lat,lon), if 1d data entered it is a floating point number representing the overall mean ''' if monthBegin monthEnd: # Offset the original array so that the the first month # becomes monthBegin, note that this cuts off the first year of data offset = slice(monthBegin - 1, monthBegin - 13) data = misc.reshapeMonthlyData(dataset1[offset]) monthIndex = slice(0, 13 - monthBegin + monthEnd) else: # Since monthBegin = monthEnd, just take a slice containing those months data = misc.reshapeMonthlyData(dataset1) monthIndex = slice(monthBegin - 1, monthEnd) tSeries = data[:, monthIndex].mean(axis = 1) means = tSeries.mean(axis = 0) return tSeries, means -- Cheers, Kyo On Jun 4, 2014, at 4:41 PM, Boustani, Maziyar (398F) maziyar.boust...@jpl.nasa.gov wrote: I guess the best solution here is to add the new Metric calcBiasAberageOverTime to our Metrics and use that in this example to be able to generate one plot. Maziyar Boustani Software Engineer - GIS Developer Science Data Understanding Group Jet Propulsion Laboratory, California Institute of Technology 4800 Oak Grove Drive, Pasadena, CA, 91109 maziyar.boust...@jpl.nasa.govmailto:maziyar.boust...@jpl.nasa.gov On Jun 4, 2014, at 4:29 PM, Loikith, Paul C (329C-Affiliate) wrote: Yes agreed. I'm guessing the issue here is the use of calcBias vs. calcBiasAveragedOverTime. The later module from metrics.py would accomplish this. I definitely agree about the colorbar too. Hope all is well. Paul From: Alex Goodman alex.good...@colostate.edumailto:alex.good...@colostate.edu Date: Wednesday, June 4, 2014 4:25 PM To: dev@climate.apache.orgmailto:dev@climate.apache.org dev@climate.apache.orgmailto:dev@climate.apache.org Cc: Boustani, Maziyar (398F) maziyar.boust...@jpl.nasa.govmailto:maziyar.boust...@jpl.nasa.gov, Paul Loikith paul.c.loik...@jpl.nasa.govmailto:paul.c.loik...@jpl.nasa.gov Subject: Re: Model Observation Evaluation exmaple Hi Paul, I think I wasn't sure what was exactly in Mazi plots. I thought what was being shown was the bias averaged for each year. Instead it sounds like the data was temporally regridded from monthly data to yearly data first, (eg, the annual average surface temperatures were calculated first, then the bias metric was ran on the temporally regridded data). What I was trying to say was that from visually inspecting the plots alone, a plot of the average values of all five of them would probably look similar to each individual plot. Sorry if I worded that poorly... in any case I think your suggestion is the correct one, what should be plotted is just the mean bias at each grid point for the five-year period. Also another side-note: When plotting biases or anomalies, it is generally ideal to have the 0 contour at the center of the colorbar. Currently you must manually enter the contour levels into one of the arguments of the contour plotting function to achieve this. Finding an elegant way to do this automatically was an often requested feature of the OCW plotting interface that I unfortunately never found the time to implement. Just something to think about. Also, thanks for the kind regards Chris, I am doing well. Alex On Wed, Jun 4, 2014 at 5:06 PM, Mattmann, Chris A (3980) chris.a.mattm...@jpl.nasa.govmailto:chris.a.mattm...@jpl.nasa.gov wrote: THanks guys, Alex, great to see you! ++ Chris Mattmann, Ph.D. Chief Architect Instrument Software and Science Data Systems Section (398) NASA Jet Propulsion Laboratory Pasadena, CA 91109 USA Office: 168-519, Mailstop: 168-527 Email:
[jira] [Commented] (CLIMATE-451) Getting Errors in virtualenv wrapper after running easy-ocw/install-osx.sh
[
https://issues.apache.org/jira/browse/CLIMATE-451?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanelfocusedCommentId=14018451#comment-14018451
]
Cameron Goodale commented on CLIMATE-451:
-
Thanks Mike. Got side tracked.
Getting Errors in virtualenv wrapper after running easy-ocw/install-osx.sh
---
Key: CLIMATE-451
URL: https://issues.apache.org/jira/browse/CLIMATE-451
Project: Apache Open Climate Workbench
Issue Type: Bug
Components: build process
Affects Versions: 0.3-incubating
Environment: OS X 10.8.5
Reporter: Cameron Goodale
Assignee: Cameron Goodale
Fix For: 0.4
Original Estimate: 3h
Remaining Estimate: 3h
I am able to use the install-osx.sh script to install a new 'ocw' virtual
env, but when I try to switch into the virtualenv using the 'workon' command
I get this error:
{code}
$ workon ocw
-bash: virtualenv_deactivate: command not found
Error: could not find environment: ocw
-bash: [: ==: unary operator expected
{code}
Also I noticed that when I run the 'lsvirtualenv' command I get the following
error:
{code}
$ lsvirtualenv
ocw
===
Error: did not expect more than one argument.
showvirtualenv [env]
{code}
After some googling I think the error message is actually coming from conda's
cli activate.py script.
https://github.com/conda/conda/blob/master/conda/cli/activate.py (See lines
53 and 95)
Need to work on this a little more to sort out this bug.
--
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Re: Model Observation Evaluation exmaple
I smell Review Board :) ++ Chris Mattmann, Ph.D. Chief Architect Instrument Software and Science Data Systems Section (398) NASA Jet Propulsion Laboratory Pasadena, CA 91109 USA Office: 168-519, Mailstop: 168-527 Email: chris.a.mattm...@nasa.gov WWW: http://sunset.usc.edu/~mattmann/ ++ Adjunct Associate Professor, Computer Science Department University of Southern California, Los Angeles, CA 90089 USA ++ -Original Message- From: Lee, Kyo (329C-Affiliate) huikyo@jpl.nasa.gov Reply-To: dev@climate.apache.org dev@climate.apache.org Date: Wednesday, June 4, 2014 8:28 PM To: dev@climate.apache.org dev@climate.apache.org Subject: Re: Model Observation Evaluation exmaple Hi Mazi, We do not have to make the new metric from scratch. As I told you two weeks ago, someone just needs to reform the following function that Kim and I updated last year. -- - def calcClimSeason(monthBegin, monthEnd, dataset1): ''' Purpose :: Calculate seasonal mean montheries and climatology for both 3-D and point time series. For example, to calculate DJF mean time series, monthBegin = 12, monthEnd =2 This can handle monthBegin=monthEnd i.e. for climatology of a specific month Input:: monthBegin - an integer for the beginning month (Jan =1) monthEnd - an integer for the ending month (Jan = 1) dataset1 - 3d numpy array of data in (t,lat,lon) or 1d numpy array montheries Output:: tSeries - if 3d numpy was entered, 3d (number of years/number of years -1 if monthBegin monthEnd,lat,lon), if 1d data entered it is a montheries of the data of length number of years means - if 3d numpy was entered, 2d (lat,lon), if 1d data entered it is a floating point number representing the overall mean ''' if monthBegin monthEnd: # Offset the original array so that the the first month # becomes monthBegin, note that this cuts off the first year of data offset = slice(monthBegin - 1, monthBegin - 13) data = misc.reshapeMonthlyData(dataset1[offset]) monthIndex = slice(0, 13 - monthBegin + monthEnd) else: # Since monthBegin = monthEnd, just take a slice containing those months data = misc.reshapeMonthlyData(dataset1) monthIndex = slice(monthBegin - 1, monthEnd) tSeries = data[:, monthIndex].mean(axis = 1) means = tSeries.mean(axis = 0) return tSeries, means -- Cheers, Kyo On Jun 4, 2014, at 4:41 PM, Boustani, Maziyar (398F) maziyar.boust...@jpl.nasa.gov wrote: I guess the best solution here is to add the new Metric calcBiasAberageOverTime to our Metrics and use that in this example to be able to generate one plot. Maziyar Boustani Software Engineer - GIS Developer Science Data Understanding Group Jet Propulsion Laboratory, California Institute of Technology 4800 Oak Grove Drive, Pasadena, CA, 91109 maziyar.boust...@jpl.nasa.govmailto:maziyar.boust...@jpl.nasa.gov On Jun 4, 2014, at 4:29 PM, Loikith, Paul C (329C-Affiliate) wrote: Yes agreed. I'm guessing the issue here is the use of calcBias vs. calcBiasAveragedOverTime. The later module from metrics.py would accomplish this. I definitely agree about the colorbar too. Hope all is well. Paul From: Alex Goodman alex.good...@colostate.edumailto:alex.good...@colostate.edu Date: Wednesday, June 4, 2014 4:25 PM To: dev@climate.apache.orgmailto:dev@climate.apache.org dev@climate.apache.orgmailto:dev@climate.apache.org Cc: Boustani, Maziyar (398F) maziyar.boust...@jpl.nasa.govmailto:maziyar.boust...@jpl.nasa.gov, Paul Loikith paul.c.loik...@jpl.nasa.govmailto:paul.c.loik...@jpl.nasa.gov Subject: Re: Model Observation Evaluation exmaple Hi Paul, I think I wasn't sure what was exactly in Mazi plots. I thought what was being shown was the bias averaged for each year. Instead it sounds like the data was temporally regridded from monthly data to yearly data first, (eg, the annual average surface temperatures were calculated first, then the bias metric was ran on the temporally regridded data). What I was trying to say was that from visually inspecting the plots alone, a plot of the average values of all five of them would probably look similar to each individual plot. Sorry if I worded that poorly... in any case I think your suggestion is the correct one, what should be plotted is just the mean bias at each grid point for the five-year period. Also another side-note: When plotting biases or anomalies, it is generally ideal to have the 0 contour at the center of the colorbar. Currently you
[GitHub] climate pull request: CLIMATE-460 - Remove old RCMET Webapp
Github user cgoodale commented on the pull request: https://github.com/apache/climate/pull/62#issuecomment-45180585 All of this clean-up of legacy code will put release 0.4 on a diet. Thanks for peering into the dark corners and cleaning out the cobwebs. :+1: --- If your project is set up for it, you can reply to this email and have your reply appear on GitHub as well. If your project does not have this feature enabled and wishes so, or if the feature is enabled but not working, please contact infrastructure at infrastruct...@apache.org or file a JIRA ticket with INFRA. ---
[jira] [Commented] (CLIMATE-461) Drop old RCMET VM
[ https://issues.apache.org/jira/browse/CLIMATE-461?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanelfocusedCommentId=14018468#comment-14018468 ] ASF GitHub Bot commented on CLIMATE-461: Github user cgoodale commented on the pull request: https://github.com/apache/climate/pull/63#issuecomment-45180502 Mike, I didn't look into each of the 110 files staged from removal, but I think we are okay to drop this from the repo. My recollection is that this code was to be used for a vagrant based build of the RCMET as a Virtual Machine at JPL. :+1: Drop old RCMET VM - Key: CLIMATE-461 URL: https://issues.apache.org/jira/browse/CLIMATE-461 Project: Apache Open Climate Workbench Issue Type: Task Components: general Affects Versions: 0.3-incubating Reporter: Michael Joyce Assignee: Michael Joyce Fix For: 0.4 There is an older VM build in /rcmet/src/main/vm As far as I know, this has been completely replaced by the OCW VM. I'm going to drop this from the code base. Please review and let me know if I'm overlooking something here! -- This message was sent by Atlassian JIRA (v6.2#6252)
[jira] [Commented] (CLIMATE-460) Drop old RCMET Webapp
[ https://issues.apache.org/jira/browse/CLIMATE-460?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanelfocusedCommentId=14018469#comment-14018469 ] ASF GitHub Bot commented on CLIMATE-460: Github user cgoodale commented on the pull request: https://github.com/apache/climate/pull/62#issuecomment-45180585 All of this clean-up of legacy code will put release 0.4 on a diet. Thanks for peering into the dark corners and cleaning out the cobwebs. :+1: Drop old RCMET Webapp - Key: CLIMATE-460 URL: https://issues.apache.org/jira/browse/CLIMATE-460 Project: Apache Open Climate Workbench Issue Type: Task Components: general Affects Versions: 0.3-incubating Reporter: Michael Joyce Assignee: Michael Joyce Fix For: 0.4 The old RCMET website (from JPL) is still in the code base at /rcmet/src/main/webapp. This is no longer supported and has long since been replaced with the OCW-UI component. I'm going to drop this from the code base. -- This message was sent by Atlassian JIRA (v6.2#6252)
