RE: Enabling drugner pipeline and identifying dates [EXTERNAL] [SUSPICIOUS]

2017-09-20 Thread Finan, Sean
Hi Gandhi, > We guess we are missing out on something as we could not find co-references > for "200mg". Should we add anymore piper for this? The piper commands that I sent has everything to obtain coreferences. I use it regularly - it is what I used on your example sentence to get the corefere

RE: Enabling drugner pipeline and identifying dates [EXTERNAL] [SUSPICIOUS]

2017-09-20 Thread Finan, Sean
That is very informative - Thanks Chen! -Original Message- From: Lin, Chen [mailto:chen@childrens.harvard.edu] Sent: Wednesday, September 20, 2017 3:37 PM To: dev@ctakes.apache.org Subject: Re: Enabling drugner pipeline and identifying dates [EXTERNAL] [SUSPICIOUS] Hi Gandhi, As

Re: Enabling drugner pipeline and identifying dates [EXTERNAL]

2017-09-20 Thread Lin, Chen
Hi Gandhi, As for the error in EventTimeRelationAnnotator, the reason is that the time-class attribute value for an temporal expression mention is missing. When we develop this annotator, we used time-class in the gold annotation as a feature to help the classifier. If this feature is missing, the

RE: Enabling drugner pipeline and identifying dates [EXTERNAL]

2017-09-20 Thread Gandhi Rajan Natarajan
Hi James & Sean, Thanks for your support. Regarding point-1, We don’t have any database or metadata to get the name or sex information. Is it not possible to achieve in cTAKES by any other names? If yes, what other approach will be feasible to implement this along with cTAKES as we need this

RE: Enabling drugner pipeline and identifying dates [EXTERNAL]

2017-09-20 Thread Finan, Sean
Thanks James! -Original Message- From: James Masanz [mailto:masanz.ja...@gmail.com] Sent: Wednesday, September 20, 2017 11:11 AM To: dev@ctakes.apache.org Subject: Re: Enabling drugner pipeline and identifying dates [EXTERNAL] 1) I would typically not use cTAKES for extracting patient na

Re: Enabling drugner pipeline and identifying dates [EXTERNAL]

2017-09-20 Thread James Masanz
1) I would typically not use cTAKES for extracting patient names or sex. is there any database or metadata that you can get that information from? 2) Dates are found by the ContextDependentTokenizerAnnotator, which uses DateFSM.java in package org.apache.ctakes.core.fsm.machine. I believe drug ne

RE: Enabling drugner pipeline and identifying dates [EXTERNAL]

2017-09-20 Thread Finan, Sean
Hi Gandhi, No problem. Can anybody else out there field at least some of this today? I may not get to it until tomorrow. Sean -Original Message- From: Gandhi Rajan Natarajan [mailto:gandhi.natara...@arisglobal.com] Sent: Wednesday, September 20, 2017 9:53 AM To: dev@ctakes.apache.org

RE: Enabling drugner pipeline and identifying dates [EXTERNAL]

2017-09-20 Thread Gandhi Rajan Natarajan
Thanks for the response Sean. Your help is really appreciated. Regards, Gandhi -Original Message- From: Finan, Sean [mailto:sean.fi...@childrens.harvard.edu] Sent: Wednesday, September 20, 2017 6:20 PM To: dev@ctakes.apache.org Subject: RE: Enabling drugner pipeline and identifying dates

RE: Enabling drugner pipeline and identifying dates [EXTERNAL]

2017-09-20 Thread Finan, Sean
Hi Gandhi, I don't have time to go through all of this right now, but I will try to get to it soon. Make sure that you are running the latest version in trunk. Sean -Original Message- From: Gandhi Rajan Natarajan [mailto:gandhi.natara...@arisglobal.com] Sent: Wednesday, September 20

RE: Enabling drugner pipeline and identifying dates [EXTERNAL]

2017-09-20 Thread Gandhi Rajan Natarajan
Hi, Could someone help me out on the below queries please? Regards, Gandhi -Original Message- From: Gandhi Rajan Natarajan [mailto:gandhi.natara...@arisglobal.com] Sent: Tuesday, September 19, 2017 8:51 PM To: dev@ctakes.apache.org Subject: RE: Enabling drugner pipeline and identifying da