t I feel we can get away from the problem.
> Unfortunately I m not able to tet this as my setup is gone with my old job.
> Try it out.
>
> Regards,
> Gandhi.
>
> On Friday, March 8, 2019, Kathy Ferro wrote:
>
> > Tim,
> >
> > Thanks for reply. I'
ge that though!
> Tim
>
> ________
> From: Kathy Ferro
> Sent: Thursday, March 7, 2019 6:10 PM
> To: dev@ctakes.apache.org
> Subject: Re: ctake web service [EXTERNAL]
>
> Tim,
>
> Does docker solution handle multiple instances? I tested t
'm hosting on an ubuntu linux machine, and I'm
> using the hsql dictionary instead of the mysql dictionary.
> Tim
>
>
> -Original Message-
> From: Kathy Ferro healthcare1...@gmail.com> kathy%20ferro%20%3chealthcare1...@gmail.com%3e>>
> Reply-to: mailto:d
: Re: ctake web service [EXTERNAL]
>
> Hi Kathy, Sean did respond that there is no timeout happening from cTAKES
> end. You might probably have to look at database settings for this closed
> connection issue.
>
> Does someone have any clue on this?
>
> On Monday, March 4, 2019,
"org.apache.ctakes.dictionary.lookup2.dictionary.JdbcRareWordDictionary"
> and "org.apache.ctakes.dictionary.lookup2.concept.JdbcConceptFactory"
>
> Does anybody aware of any timeout settings that needs to be done in these
> implementations to avoid DB connection time
Hi,
Just want to see if anybody has experience this issue.
If the web service had been up for a day or two, it will drop the
dictionary lookup. The only result it returns are ConllDependencyNode tag
in the xmi file; no mention, no concept, etc...
I haven't have a chance to investigate it,
Good Afternoon,
As we know, providerd love to abbreviate their terms. Is there a set up to
look for abbreviations and avoid it as the end of sentence.
Example:
Pt. denies any leg pain.
cTakes parses out as two sentences. It really need to be one.
Thank you
Kathy
Hello,
I know I had asked similar question. I am welling to keep adding the terms
into dictionary; but I don't seen to get cTakes to pick them up.
example 1:
In the dictionary
INSERT INTO CUI_TERMS VALUES(2865275,0,14,'strain of musc / tend at lower
leg level , left leg , init','strain')
: Wednesday, November 29, 2017 9:48 AM
> To: dev@ctakes.apache.org
> Subject: Re: exact match to CUI_TERM table question. [EXTERNAL]
> [SUSPICIOUS]
>
> On Wed, 2017-11-29 at 09:36 -0500, Kathy Ferro wrote:
> > Good Morning,
> >
> > 1. I have a term for x-ray that
Good Morning,
1. I have a term for x-ray that has different spelling such as x.ray,
x.rays, xray, xrays, etc...
I see several files in resources\org\apache\ctakes\assertion\semantic_classes
folder.
I created x-ray.txt with all the terms above and hoping it will do the
trick. No luck.
Is there a
try with that (remove "*=*") before increasing the
> > number(s).
> >
> > The piper files aren't source code, they are just plain text and don't
> > require compiling, etc. How are you running the pipeline right now?
> > From a binary with a bin/run* scrip
ht be ok for the left, so feel free
> to remove "MaxLeftScopeSize=10" from the line.
>
> Then run your piper file (command line, gui, maven profile, etc.)
> https://cwiki.apache.org/confluence/display/CTAKES/Piper+Files
>
> Sean
>
> -Original Message---
Good evening,
I ran a few sentences through default clinical pipeline.
It really reliable if it's only one term after negative, but I am get
in-consistent value for polarity for the list of terms. Please see example
below.
1. denies fatigue, malaise, fever, weight loss
SignSymthomMention:
On Wed, Oct 11, 2017 at 5:14 PM, Kathy Ferro <healthcare1...@gmail.com>
wrote:
> Gandhi and Matthew,
>
> Thank you for the information.
>
> Kathy
>
> On Wed, Oct 11, 2017 at 1:35 AM, Gandhi Rajan Natarajan <
> gandhi.natara...@arisglobal.com> wrote:
>
>>
Good Evening,
I got this warning message when running ctakes clinical pipeline. It
doesn't give me the warning on every documents.
What file do I turn the setting to true?
WARNING: Message count: 128; Feature
org.apache.ctakes.typesystem.type.textsem.Predicate:relations is marked
ava and rebuild ctakes-dictionary-lookup-fast
> > module and use the jar file.
> >
> > 3) Do you think I can use SQL server instead of MySQL? My SQL seems
> > to run faster.
> >
> > This choice is user specific and I can't comment on performance
> &g
Gandhi,
My name is Kathy Ferro.
Matthew and I are trying to accomplish the thing. I got the scripts loaded
into both SQL server and MySQL. I did it in two ways.
1. Manually modifier the scripts for DB specific and run them in query
analyzer window as you described. Works find if the data
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