Hello,
I would like to persist cTAKES' not negated clinical findings and their CUI
in a relational database, right after the processing. Do you recommend me
to use a jdbc consumer directly? If yes, which kind of configurations have
to be made in order to put it to work? And which consumer exactly
,
Manuel Lamy
2018-03-05 3:51 GMT+00:00 Gandhi Rajan Natarajan <
gandhi.natara...@arisglobal.com>:
> Hi Manuel,
>
> As far as I know cTAKES supports Pretty print and HTML format too. For
> more info on this, you may have to look at the cTAKES demo webapp code
> under https://github.c
Ending with "CasConsumer" is a good giveaway
> that the writer is one of the older types.
>
> There is a JdbcWriterTemplate that was built to write to a database, but
> it requires a fair amount of configuration.
>
> Sean
>
> [1] https://cwiki.apache.org/confl
Hello everyone,
I'm using cTAKES clinical pipeline in order to process a lot of documents
in a row.
I'm using this command in the command line: runClinicalPipeline.bat -i
input --xmiOut output --user username --pass password
This works, adapted to my credentials and my paths of course. My
t; Cheers,
> Sean
>
>
> -Original Message-
> From: Manuel Lamy [mailto:mmvp...@gmail.com]
> Sent: Thursday, January 25, 2018 6:02 PM
> To: dev@ctakes.apache.org
> Subject: Re: Problem using CPE and XMI Writer CAS Consumer [EXTERNAL]
>
> Hello Sean,
&
to help.
Thanks a lot Sean.
Best regards,
Manuel Lamy
[1] -
https://www.snomed.org/snomed-ct/snomed-ct-worldwide/translations-of-snomed-ct
2018-01-25 20:43 GMT+00:00 Finan, Sean <sean.fi...@childrens.harvard.edu>:
> Hi Manuel,
>
> Thank you for the information. I have a cou
TAKES/Piper+Files
>
> I hope that you find the pipers easier to understand and use than the old
> xml descriptors.
>
> Anyway, if you run the ctakes 4.0 default clinical pipeline as outlined in
> the wiki page it will use the new FileTreeReader and FileTreeXmiWriter
> combination.
&
or character combination. A
> document reader should be massaging documents before they are processed and
> sent to the writer. The most recent file reader is named FileTreeReader
> and is also in ctakes core.
>
> Sean
>
>
>
> From: Manuel Lamy [mailto:mmvp...@gmail.com]
&g
Hello guys,
I'm having problems running the CPE using a XMI Writer CAS Consumer.
However, it works with other consumers.
*Problem*
In the figure below, you can see my setup and the error I'm obtaining:
[image: Imagem inline 2]
*Logs*
Concerning logs, I'm obtaining this from Intellij:
