Re: Failing to compile runPiperGui profile in Intellij [EXTERNAL]

[Reed Villanueva]

I see, thanks for the info.

On Fri, Mar 30, 2018 at 7:17 AM, Finan, Sean <
sean.fi...@childrens.harvard.edu> wrote:

> This appears to be a bug in intellij, and oddly enough it just started
> showing up in my system today.
>
> You can go through the possible solutions here (I haven't tried):
> https://stackoverflow.com/questions/20496239/maven-
> plugins-can-not-be-found-in-intellij
>
> There are probably other solutions out there.  If you find one please
> share.
>
> Sean
>
>
> 
> From: Reed Villanueva 
> Sent: Thursday, March 29, 2018 4:08 PM
> To: dev@ctakes.apache.org
> Subject: Failing to compile runPiperGui profile in Intellij [EXTERNAL]
>
> ​Using the instructions of the dev guide (
> https://urldefense.proofpoint.com/v2/url?u=https-3A__cwiki.
> apache.org_confluence_display_CTAKES_cTAKES-2B4.0-
> 2BDeveloper-2BInstall-2BGuide-23cTAKES4.0DeveloperInstallGuide-
> 2DRunningUIMACVDwithMaven=DwIFaQ=qS4goWBT7poplM69zy_
> 3xhKwEW14JZMSdioCoppxeFU=fs67GvlGZstTpyIisCYNYmQCP6r0bc
> pKGd4f7d4gTao=xSzM-Gf8hgP4XQgXM74hPSwUsXhvzcKWWkVfDnaid5Y=7uzLWQ_
> UTWoiVqMKOzfom8yVgwXpBoHOeKpqzzlrWok=)​
> to try to compile the runPiperGui profile in Intellij IDE, I get the
> following error:
>
> [INFO] ctakes-examples  FAILURE [
> > 9.248 s]
> > [INFO] Apache cTAKES Resources ctakes-ytex-res  SKIPPED
> > [INFO] Apache cTAKES YTEX . SKIPPED
> > [INFO] Apache cTAKES YTEX UIMA  SKIPPED
> > [INFO] Apache cTAKES YTEX Web . SKIPPED
> > [INFO] Apache cTAKES Distribution . SKIPPED
> > [INFO] Apache cTAKES Regression-test .. SKIPPED
> > [INFO] Apache cTAKES template filler .. SKIPPED
> > [INFO]
> > 
> > [INFO] BUILD FAILURE
> > [INFO]
> > 
> > [INFO] Total time: 20.514 s
> > [INFO] Finished at: 2018-03-29T09:38:11-10:00
> > [INFO] Final Memory: 72M/1300M
> > [INFO]
> > 
> > [ERROR] Failed to execute goal
> > org.codehaus.mojo:exec-maven-plugin:1.2.1:java (default) on project
> > ctakes-examples: Unable to parse configuration of mojo
> > org.codehaus.mojo:exec-maven-plugin:1.2.1:java for parameter arguments:
> > Cannot store value into array: ArrayStoreException -> [Help 1]
>
>
> Don't work with java often, but googling the error, looking at this stack
> overflow post (
> https://urldefense.proofpoint.com/v2/url?u=https-3A__
> stackoverflow.com_questions_23832192_mvn-2Dexecexec-2Dand-
> 2Dmvn-2Dexecjava-2Ddifference=DwIFaQ=qS4goWBT7poplM69zy_
> 3xhKwEW14JZMSdioCoppxeFU=fs67GvlGZstTpyIisCYNYmQCP6r0bc
> pKGd4f7d4gTao=xSzM-Gf8hgP4XQgXM74hPSwUsXhvzcKWWkVfDnaid5Y=
> lKgucjFz23lmBLcQEyhJpt_kX_bc4cZm3kVaQj3R5-I=),
> and taking a shot in the dark, I changed the
> trunk/ctakes-examples/pom.xml's execution goal for the
> org.codehaus.mojo.exec-maven-plugin plugin from
>
> 
> > 
> > org.codehaus.mojo
> > exec-maven-plugin
> > 
> > 
> > 
> > java
> > 
> > 
> > 
> > 
> >
> > to
>
> > 
> > 
> > org.codehaus.mojo
> > exec-maven-plugin
> > 
> > 
> > 
> > exec
> > 
> > 
> > 
> > 
> >
> > I now seem to be able to compile the piper submitter GUI (though the
> error
> does show up after I close the GUI).
>
> Could someone let me know what is happening here? Is this normal?
> Thanks.
>

Re: Failing to compile runPiperGui profile in Intellij [EXTERNAL]

[Finan, Sean]

By the way, if you use the exec goal you can do things like pass more memory or 
start with the default clinical pipeline, etc.  Sean


clinicalGui


clinicalGui





org.codehaus.mojo
exec-maven-plugin
1.2.1



compile



exec




java

true

true

${project.parent.basedir}

-classpath

-Xmx4G

org.apache.ctakes.gui.pipeline.PiperRunnerGui
-p

resources/org/apache/ctakes/clinical/pipeline/DefaultFastPipeline.piper








From: Reed Villanueva 
Sent: Thursday, March 29, 2018 4:08 PM
To: dev@ctakes.apache.org
Subject: Failing to compile runPiperGui profile in Intellij [EXTERNAL]

​Using the instructions of the dev guide (
https://urldefense.proofpoint.com/v2/url?u=https-3A__cwiki.apache.org_confluence_display_CTAKES_cTAKES-2B4.0-2BDeveloper-2BInstall-2BGuide-23cTAKES4.0DeveloperInstallGuide-2DRunningUIMACVDwithMaven=DwIFaQ=qS4goWBT7poplM69zy_3xhKwEW14JZMSdioCoppxeFU=fs67GvlGZstTpyIisCYNYmQCP6r0bcpKGd4f7d4gTao=xSzM-Gf8hgP4XQgXM74hPSwUsXhvzcKWWkVfDnaid5Y=7uzLWQ_UTWoiVqMKOzfom8yVgwXpBoHOeKpqzzlrWok=)​
to try to compile the runPiperGui profile in Intellij IDE, I get the
following error:

[INFO] ctakes-examples  FAILURE [
> 9.248 s]
> [INFO] Apache cTAKES Resources ctakes-ytex-res  SKIPPED
> [INFO] Apache cTAKES YTEX . SKIPPED
> [INFO] Apache cTAKES YTEX UIMA  SKIPPED
> [INFO] Apache cTAKES YTEX Web . SKIPPED
> [INFO] Apache cTAKES Distribution . SKIPPED
> [INFO] Apache cTAKES Regression-test .. SKIPPED
> [INFO] Apache cTAKES template filler .. SKIPPED
> [INFO]
> 
> [INFO] BUILD FAILURE
> [INFO]
> 
> [INFO] Total time: 20.514 s
> [INFO] Finished at: 2018-03-29T09:38:11-10:00
> [INFO] Final Memory: 72M/1300M
> [INFO]
> 
> [ERROR] Failed to execute goal
> org.codehaus.mojo:exec-maven-plugin:1.2.1:java (default) on project
> ctakes-examples: Unable to parse configuration of mojo
> org.codehaus.mojo:exec-maven-plugin:1.2.1:java for parameter arguments:
> Cannot store value into array: ArrayStoreException -> [Help 1]


Don't work with java often, but googling the error, looking at this stack
overflow post (
https://urldefense.proofpoint.com/v2/url?u=https-3A__stackoverflow.com_questions_23832192_mvn-2Dexecexec-2Dand-2Dmvn-2Dexecjava-2Ddifference=DwIFaQ=qS4goWBT7poplM69zy_3xhKwEW14JZMSdioCoppxeFU=fs67GvlGZstTpyIisCYNYmQCP6r0bcpKGd4f7d4gTao=xSzM-Gf8hgP4XQgXM74hPSwUsXhvzcKWWkVfDnaid5Y=lKgucjFz23lmBLcQEyhJpt_kX_bc4cZm3kVaQj3R5-I=),
and taking a shot in the dark, I changed the
trunk/ctakes-examples/pom.xml's execution goal for the
org.codehaus.mojo.exec-maven-plugin plugin from


> 
> org.codehaus.mojo
> exec-maven-plugin
> 
> 
> 
> java
> 
> 
> 
> 
>
> to

> 
> 
> org.codehaus.mojo
> exec-maven-plugin
> 
> 
> 
> exec
> 
> 
> 
> 
>
> I now seem to be able to compile the piper submitter GUI (though the error
does show up after I close the GUI).

Could someone let me know what is happening here? Is this normal?
Thanks.

Re: Failing to compile runPiperGui profile in Intellij [EXTERNAL]

[Finan, Sean]

This appears to be a bug in intellij, and oddly enough it just started showing 
up in my system today.

You can go through the possible solutions here (I haven't tried):
https://stackoverflow.com/questions/20496239/maven-plugins-can-not-be-found-in-intellij

There are probably other solutions out there.  If you find one please share.

Sean



From: Reed Villanueva 
Sent: Thursday, March 29, 2018 4:08 PM
To: dev@ctakes.apache.org
Subject: Failing to compile runPiperGui profile in Intellij [EXTERNAL]

​Using the instructions of the dev guide (
https://urldefense.proofpoint.com/v2/url?u=https-3A__cwiki.apache.org_confluence_display_CTAKES_cTAKES-2B4.0-2BDeveloper-2BInstall-2BGuide-23cTAKES4.0DeveloperInstallGuide-2DRunningUIMACVDwithMaven=DwIFaQ=qS4goWBT7poplM69zy_3xhKwEW14JZMSdioCoppxeFU=fs67GvlGZstTpyIisCYNYmQCP6r0bcpKGd4f7d4gTao=xSzM-Gf8hgP4XQgXM74hPSwUsXhvzcKWWkVfDnaid5Y=7uzLWQ_UTWoiVqMKOzfom8yVgwXpBoHOeKpqzzlrWok=)​
to try to compile the runPiperGui profile in Intellij IDE, I get the
following error:

[INFO] ctakes-examples  FAILURE [
> 9.248 s]
> [INFO] Apache cTAKES Resources ctakes-ytex-res  SKIPPED
> [INFO] Apache cTAKES YTEX . SKIPPED
> [INFO] Apache cTAKES YTEX UIMA  SKIPPED
> [INFO] Apache cTAKES YTEX Web . SKIPPED
> [INFO] Apache cTAKES Distribution . SKIPPED
> [INFO] Apache cTAKES Regression-test .. SKIPPED
> [INFO] Apache cTAKES template filler .. SKIPPED
> [INFO]
> 
> [INFO] BUILD FAILURE
> [INFO]
> 
> [INFO] Total time: 20.514 s
> [INFO] Finished at: 2018-03-29T09:38:11-10:00
> [INFO] Final Memory: 72M/1300M
> [INFO]
> 
> [ERROR] Failed to execute goal
> org.codehaus.mojo:exec-maven-plugin:1.2.1:java (default) on project
> ctakes-examples: Unable to parse configuration of mojo
> org.codehaus.mojo:exec-maven-plugin:1.2.1:java for parameter arguments:
> Cannot store value into array: ArrayStoreException -> [Help 1]


Don't work with java often, but googling the error, looking at this stack
overflow post (
https://urldefense.proofpoint.com/v2/url?u=https-3A__stackoverflow.com_questions_23832192_mvn-2Dexecexec-2Dand-2Dmvn-2Dexecjava-2Ddifference=DwIFaQ=qS4goWBT7poplM69zy_3xhKwEW14JZMSdioCoppxeFU=fs67GvlGZstTpyIisCYNYmQCP6r0bcpKGd4f7d4gTao=xSzM-Gf8hgP4XQgXM74hPSwUsXhvzcKWWkVfDnaid5Y=lKgucjFz23lmBLcQEyhJpt_kX_bc4cZm3kVaQj3R5-I=),
and taking a shot in the dark, I changed the
trunk/ctakes-examples/pom.xml's execution goal for the
org.codehaus.mojo.exec-maven-plugin plugin from


> 
> org.codehaus.mojo
> exec-maven-plugin
> 
> 
> 
> java
> 
> 
> 
> 
>
> to

> 
> 
> org.codehaus.mojo
> exec-maven-plugin
> 
> 
> 
> exec
> 
> 
> 
> 
>
> I now seem to be able to compile the piper submitter GUI (though the error
does show up after I close the GUI).

Could someone let me know what is happening here? Is this normal?
Thanks.