Re: [discuss] Image processing with Python

2018-05-25 Thread Kevin Vilbig via discuss
This is not python, but the concepts will be the same and there may be some bits in here that aren't in the other resources that people shared. http://www.datacarpentry.org/r-raster-vector-geospatial/ On Fri, May 25, 2018 at 2:12 PM, Jonah Duckles wrote: > More to

Re: [discuss] Image processing with Python

2018-05-25 Thread Juan Nunez-Iglesias via discuss
To add to the avalanche, we have a lot of materials at https://github.com/scikit-image/skimage-tutorials/tree/master/lectures The numbered ones are the most complete/polished. Juan. On 25 May 2018, 9:07 AM -0700, Luis Pedro Coelho , wrote: > I have a partially (cell-biology

Re: [discuss] Image processing with Python

2018-05-25 Thread Luis Pedro Coelho
I have a partially (cell-biology focused) Jupyter tutorial at: https://github.com/luispedro/python-image-tutorial HTH Luis -- Luis Pedro Coelho | EMBL | http://luispedro.org PI of Big Data Biology Lab at Fudan University (start mid-2018) http://big-data-biology.org On Fri, 25 May 2018, at

Re: [discuss] Image processing with Python

2018-05-25 Thread Amy E. Hodge
Hi Carlos, I know that last year Miriam Goodman (mbgoo...@stanford.edu), a professor at Stanford, had some grad students working on Carpentries curriculum around image processing for a microscopy course. You might check in with her, as I don’t know where those materials live (unless they are

Re: [discuss] Image processing with Python

2018-05-25 Thread Carlos Martinez Ortiz
Thank you all for your input, I'm sure I can put together a nice lesson with all your suggestions  Many thanks! From: Bennet Fauber Sent: 25 May 2018 14:38:57 To: discuss Subject: Re: [discuss] Image processing with Python Carlos, You

Re: [discuss] Image processing with Python

2018-05-25 Thread Bennet Fauber
Carlos, You might find something in this lesson useful https://bic-berkeley.github.io/psych-214-fall-2016/arrays_and_images.html There are also three exercises in the parent lesson, https://bic-berkeley.github.io/psych-214-fall-2016/day_01.html As others have said, possibly not

Re: [discuss] RE: Image processing with Python

2018-05-25 Thread ana...@student.matnat.uio.no
http://bi1x.caltech.edu/2016/handouts/image_processing_1.html https://mmeysenburg.github.io/image-processing/ -- The Carpentries: discuss Permalink: https://carpentries.topicbox.com/groups/discuss/discussions/T4240adcd25206bde-M639bebed636d401a4e89599b

Re: [discuss] Image processing with Python

2018-05-25 Thread Olav Vahtras via discuss
Check out the scipy lecture notes https://www.scipy-lectures.org/ A couple of sections on image processing Regards Olav > 25 maj 2018 kl. 13:36 skrev Ashwin Srinath : > > Carlos, > > Here's a Python tutorial focused on packaging, testing, and > performance using very

[discuss] RE: Image processing with Python

2018-05-25 Thread Tom Wright
Hi Carlos, Not a full lesson but here’s an example I worked through with a group. https://github.com/tomwright01/imp-parallel From: Carlos Martinez Ortiz Sent: Friday, May 25, 2018 7:34 AM To: discuss@lists.carpentries.org Subject: [discuss] Image processing with

Re: [discuss] Image processing with Python

2018-05-25 Thread Ashwin Srinath
Carlos, Here's a Python tutorial focused on packaging, testing, and performance using very simple image analysis: https://github.com/clemsonciti/scientific-python I'm not sure if it's appropriate for complete novices, but I'm leaving it here in case you can salvage anything from it. Let me know

[discuss] Image processing with Python

2018-05-25 Thread Carlos Martinez Ortiz
Hello! Does anybody have material for an image processing lesson? I am preparing a workshop for a group of people who will mostly be working with image analysis and thought it might be good if I can tune the content a little bit to make it more interesting to them. Any would be most