On 02/22/2017 03:40 AM, Maxime Boissonneault wrote:
> Thanks Robert,
> While I understand and am all in favor of reusing dependencies, most
> packages with dependencies do not provide download hooks for specific
> versions of their dependencies. PETSc is this way, I believe OpenFoam
> too. When
Thanks Robert,
While I understand and am all in favor of reusing dependencies, most
packages with dependencies do not provide download hooks for specific
versions of their dependencies. PETSc is this way, I believe OpenFoam
too. When the developers go through this trouble, I prefer to assume
I'm not an expert at PETSc (though I know it is widely used on large
clusters, I haven't see it in bioinfo). My general reading is that there
are two general EasyBuild principles at work here, but they are certainly
at odds with a few of these "bundle all the deps" type installs that we are
seeing
To give more concreteness to my question, here is what our PETSc install
script looks like. It is pretty much a configure make make install.
# module --force purge
# module load compilers/intel mpi/openmpi libs/mkl/11.1
apps/cmake/2.8.12 apps/buildtools apps/devtools mpi/openmpi/1.8.8
# cd
Hi
We’ve also spotted differences on the Jenkins shell under RH, maybe because its
shell is not interactive. The profile was not being sourced, so we had to add
it to the jenkins script:
source ~/.profile
We don’t use Lmod though, not sure this will help.
Cheers,
--
Guilherme Peretti-Pezzi
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