Re: [easybuild] Re: Question about PETSc EasyBlock

Some more info I discovered. The files that PETSc downloads are actually correctly installed in the final installation directory during the configure phase. However, somewhere between the configure and the install phase, something (I suspect EasyBuild) deletes them. Is it possible that

Re: [easybuild] Post Install Tests for EasyBuild

Hi Shahzeb, I looked at this kind of problem some time ago, and I created my own "framework" (ie set of scripts) based on CTest/CDash. You can find some slides about it and a video of the talk here: https://archive.fosdem.org/2014/schedule/event/hpc_devroom_automatic_testing/ The code is

[easybuild] Post Install Tests for EasyBuild

Hello, I am curious if anyone knows of any Testing framework that can run test for a particular application. In order for me to write test I have to learn the software and write appropriate test cases, this is very time-consuming. Similar to EasyBuild I am wondering if there is a tool to do

Re: [easybuild] Re: Question about PETSc EasyBlock

On 17-02-22 14:08, Kenneth Hoste wrote: Hi Maxime, On 22/02/2017 17:22, Maxime Boissonneault wrote: Actually, looking through the log file, I see PETSc which says to run make install, but easybuild runs "make" without the install option: 3693 make[2]: Leaving directory

Re: [easybuild] Re: Question about PETSc EasyBlock

Hi Maxime, On 22/02/2017 17:22, Maxime Boissonneault wrote: Actually, looking through the log file, I see PETSc which says to run make install, but easybuild runs "make" without the install option: 3693 make[2]: Leaving directory '/dev/shm/mboisson/PETSc/3.7.5/iompi-2016.4/petsc-3.7.5' 3694

Re: [easybuild] Re: Question about PETSc EasyBlock

Actually, looking through the log file, I see PETSc which says to run make install, but easybuild runs "make" without the install option: 3693 make[2]: Leaving directory '/dev/shm/mboisson/PETSc/3.7.5/iompi-2016.4/petsc-3.7.5' 3694 = 3695 make[1]:

Re: [easybuild] Re: Question about PETSc EasyBlock

Hi Alan, I don't think so. Looking at the source code of petsc.py, that skips the "make install". That would be if I wanted to compiled in the source directory and expected it to remain there. In the past, I have never done this except for OpenFOAM. Typically, the "make install" of PETSc

Re: [easybuild] Re: Question about PETSc EasyBlock

Hi Maxime, You are probably missing: sourceinstall = True in your easyconfig. Alan On 22 February 2017 at 17:03, Maxime Boissonneault < maxime.boissonnea...@calculquebec.ca> wrote: > Hi Inge, > Thanks. I am trying to do this. However, while PETSc compiles fine, it > seems that it does not

Re: [easybuild] Re: Question about PETSc EasyBlock

Hi Inge, Thanks. I am trying to do this. However, while PETSc compiles fine, it seems that it does not install hypre, metis, etc. in the petsc folder. When I installed it manually (a different version though), it did copy those files. Have you run into this ? Maxime On 17-02-22 02:10,

Re: [easybuild] Theano orte_init

Hi We have a similar problem when building Theano on login nodes: MPI subsystem is not available, so the sanity check fails. Our workaround (not approved by Kenneth) is to skip the sanity check, see here:

Re: [easybuild] Theano orte_init

No it's not submitted to a scheduler (the scheduler is configured in EasyBuild but I'm not using it, ie. not using --job) 2017-02-22 12:52 GMT+01:00 Robert Schmidt : > As a default sanity check for python packages, easybuild will try to > import the main module. In this case

Re: [easybuild] Theano orte_init

As a default sanity check for python packages, easybuild will try to import the main module. In this case it seems like the import was enough to trigger an mpi failure. It is a bit weird that the import is enough to cause that problem, but maybe there is something else in the environment that

[easybuild] Theano orte_init

Hello, I'm back again with my problem (I had a similar problem with Rmpi), maybe someone has an idea of what is going on. I tried to install Theano-0.8.2-foss-2016a-Python-2.7.11.eb and had the following error: == 2017-02-22 11:19:25,788 build_log.py:147 ERROR EasyBuild crashed with an error