[easybuild] easybuild and docker

2016-07-12 Thread Olaf Walter
Dear easybuilders, I am looking for a way to build containers for deployment in the cloud. I remember there was a discussion about this a while ago on the mailing list, but I can not find it. Is there a way to automatically create a docker container containing a complete easybuild? Best

[easybuild] Python extensions at Pypi relocated, download fails

2016-06-23 Thread Olaf Walter
Dear easybuilders, I just tried building the latest Python and noticed that extensions do not longer download. The URL seems to have changed. For example: exts_list = [ ('pip', '8.1.2', { 'source_urls': ['http://pypi.python.org/packages/source/p/pip/'], }), results in: ==

AW: AW: [easybuild] UCS-2 and UCS-4 in Python easyblock

2016-05-04 Thread Olaf Walter
e Gesendet: Samstag, 30. April 2016 12:00 An: easybuild@lists.ugent.be Betreff: Re: AW: [easybuild] UCS-2 and UCS-4 in Python easyblock Hi Olaf, On 28/04/16 15:28, Olaf Walter wrote: Hi Kenneth, when we install Python packages using pip from one Python binary, and then try importing them with a differ

AW: [easybuild] UCS-2 and UCS-4 in Python easyblock

2016-04-28 Thread Olaf Walter
-requ...@lists.ugent.be [mailto:easybuild-requ...@lists.ugent.be] Im Auftrag von Kenneth Hoste Gesendet: Donnerstag, 28. April 2016 15:06 An: easybuild@lists.ugent.be Betreff: Re: [easybuild] UCS-2 and UCS-4 in Python easyblock Hi Olaf, On 28/04/16 14:59, Olaf Walter wrote: Dear easybuilders, we

[easybuild] UCS-2 and UCS-4 in Python easyblock

2016-04-28 Thread Olaf Walter
Dear easybuilders, we jumped to eb 2.7, and our Python builds became incompatible. We think the cause is: https://github.com/hpcugent/easybuild-easyblocks/pull/817 https://github.com/hpcugent/easybuild-easyblocks/issues/651 From the Python docs at https://docs.python.org/2/c-api/unicode.html:

[easybuild] custom glibc

2015-11-13 Thread Olaf Walter
Dear easybuilders, has anybody ever attempted to do an easybuild with a custom glibc? The GCC HOWTO document has some basic hints, and I thought this could be handled by a custom easyconfig for gcc. http://www.tldp.org/HOWTO/Glibc2-HOWTO-6.html I would expect major incompatibilites with the

AW: [easybuild] A patch containing a new file

2014-04-04 Thread Olaf Walter
easybuild@lists.ugent.be Betreff: Re: [easybuild] A patch containing a new file Hi Olaf, On 04/04/14 14:45, Olaf Walter wrote: > Dear easybuilders, > > the tool that I'm working on contains two source directories, each of them > requiring a make. My idea was to create a patch tha

[easybuild] A patch containing a new file

2014-04-04 Thread Olaf Walter
Dear easybuilders, the tool that I'm working on contains two source directories, each of them requiring a make. My idea was to create a patch that writes a top-level Makefile that calls both of them. This is what I get: EasyBuildError: "EasyBuild crashed with an error (at

AW: [easybuild] custom conflicts

2014-03-13 Thread Olaf Walter
Auftrag von Kenneth Hoste Gesendet: Donnerstag, 13. März 2014 13:05 An: easybuild@lists.ugent.be Betreff: Re: [easybuild] custom conflicts Hi Olaf, On 13/03/14 11:01, Fotis Georgatos wrote: > Hi Olaf, > > On Mar 13, 2014, at 10:53 AM, Olaf Walter wrote: >> In this case, I would ha

[easybuild] custom conflicts

2014-03-13 Thread Olaf Walter
Hi all, I am creating an eb for MapSplice http://www.netlab.uky.edu/p/bioinfo/MapSplice2 which brings its own versions if SamTools and bowtie. I could patch the Makefile to remove SamTools from being built and flag it as a dependency instead. But the bowtie version that is included seems

[easybuild] Python and readline

2014-03-13 Thread Olaf Walter
Dear easybuilders, I am having an issue with my Python build: It does not link to the readline libraries. On the Python prompt, editing using the arrow keys does not work. Does the eb need some special tweaking to pick up readline? I have attached my Python-2.7.6-goolf-1.4.12-no-OFED.eb file