Re: [O] a new csl - citation style lisp ;)

y it will be to modify backend outputs, e.g. to change how in-text citations are hyperlinked to bibliography entries, or if it would be easy to have a bibitems list prepared for LaTeX, or to export as an org-file with footnotes, or otherwise linked references, etc... We can only learn those things b

Re: [O] org-ref is not using default bibliography file

dd-to-list 'load-path org-ref-path) > > ;; make sure you have dash, helm, helm-bibtex, ebib, s, f, hydra and > key-chord > ;; in your load-path > ;; auto-install dependencies > (require 'org-ref) > > ;; optional but very useful libraries in org-ref > (require 'doi-utils) > (require 'jmax-bibtex) > (require 'pubmed) > (require 'arxiv) > (require 'sci-id) > > #+END_SRC -- Professor John Kitchin Doherty Hall A207F Department of Chemical Engineering Carnegie Mellon University Pittsburgh, PA 15213 412-268-7803 @johnkitchin http://kitchingroup.cheme.cmu.edu

Re: [O] Embedding and extracting license/author information in an image file

similar for pdf, but did not find anything but external programs. > > Footnotes: > > [fn:1] https://en.wikipedia.org/wiki/Extensible_Metadata_Platform -- Professor John Kitchin Doherty Hall A207F Department of Chemical Engineering Carnegie Mellon University Pittsburgh, PA 15213 412-268-7803 @johnkitchin http://kitchingroup.cheme.cmu.edu

Re: [O] More questions about CSL and org-mode

ting an xml citation, and then using xslt to translate it to the format you want? Or something equivalent? Your translation would still have to be clever to avoid nested syntax, which I guess requires some recursive parsing of the output. Modifying the parse tree is more elegant than the re

Re: [O] LaTeX export with section number, name and page in internal links

e-by-custom-id "sec" path)) > (lambda (path desc format) >(org-export-dissertation-link "sec" path (or desc "Section") format))) > > ; etc. etc. > #+END_SRC elisp > > Best, > Richard > > OpenPGP Key ID: CF6FA646 > Fingerprint: 9969 43E1 CF6F A646 > > (See http://www.ocf.berkeley.edu/~rwl/encryption.html for more information.) -- Professor John Kitchin Doherty Hall A207F Department of Chemical Engineering Carnegie Mellon University Pittsburgh, PA 15213 412-268-7803 @johnkitchin http://kitchingroup.cheme.cmu.edu

Re: [O] More questions about CSL and org-mode

Richard Lawrence writes: > Hi John, > > John Kitchin <jkitc...@andrew.cmu.edu> writes: > >> Hi all, >> >> This is mostly for the people working on citations in org-mode. >> >> I have been reading about CSL more this weekend. IIRC, one of t

Re: [O] More questions about CSL and org-mode

by the way: > > https://groups.google.com/d/msg/zotero-dev/Bz_IenruxX4/24QWuyEIp_IJ > > Best, > Richard > > P.S. John, thanks for your continued research on this. I see that our > procrastination habits are on the same schedule. :) -- Professor John Kitchin Doherty Hall A207F Department of Chemical Engineering Carnegie Mellon University Pittsburgh, PA 15213 412-268-7803 @johnkitchin http://kitchingroup.cheme.cmu.edu

Re: [O] problem with org-babel-tangle

or into the code block and execute C-c C-v t > and I obtain > > Tangled 0 code blocks from new.org > C-c C-v f gives the same result. > > What do I miss? > > Thanks > > Uwe Brauer -- Professor John Kitchin Doherty Hall A207F Department of Chemical Engineering Carnegi

Re: [O] Two column layout from org source?

check out http://mirrors.concertpass.com/tex-archive/macros/latex/contrib/paracol/paracol-man.pdf John --- Professor John Kitchin Doherty Hall A207F Department of Chemical Engineering Carnegie Mellon University Pittsburgh, PA 15213 412-268-7803 @johnkitchin http

[O] More questions about CSL and org-mode

://github.com/inukshuk/citeproc-ruby The ruby one looks pretty advanced. -- Professor John Kitchin Doherty Hall A207F Department of Chemical Engineering Carnegie Mellon University Pittsburgh, PA 15213 412-268-7803 @johnkitchin http://kitchingroup.cheme.cmu.edu

Re: [O] jabref like orgmode based solution to bibliography management (not for latex)

othing is selected > No Actions available [8 times] > > thx again > > Z > > On Sat, Dec 5, 2015 at 3:05 PM, John Kitchin <jkitc...@andrew.cmu.edu> > wrote: > >> Try (untested) >> >> >> >> >> >> John >> >>

Re: [O] jabref like orgmode based solution to bibliography management (not for latex)

;kloog !unpublished !prep " :candidate-number-limit 500))) John ------- Professor John Kitchin Doherty Hall A207F Department of Chemical Engineering Carnegie Mellon University Pittsburgh, PA 15213 412-268-7803 @johnkitchin http://kitchingroup.cheme.cmu.edu On Sat, Dec 5

Re: [O] Citation processing via Zotero + zotxt

Matt Lundin writes: > Hi John, > > John Kitchin <jkitc...@andrew.cmu.edu> writes: > >> If a reference type is not listed in the CSL, it also will not be >> supported by CSL I suppose. > > How is this different than biblatex or bibtex? A user could just mo

Re: [O] Citation processing via Zotero + zotxt

> > I am not yet convinced a citation processor will get us where we want > > because of the complexity of the external dependencies, and the > > potential/probable need for us to define new CSL files for different > > backends, or at a minimum for org-formatted citations and > > bibliographies.

Re: [O] Latex export: How to handle multiple authors, emails, institutes

ication as follows: > > #+begin_src org > ,#+latex_class: springer > # Article/chapter specific information: title, authors, institution > ,#+title: The full title of the chapter > ,#+author: The authors > ,#+latex_header: \titlerunning{The running title for lo

[O] something in between @@html:@@ and html blocks

block it adds line breaks in the html export. Is there a regular way to avoid this, e.g. to insert a large snippet? Thanks, -- Professor John Kitchin Doherty Hall A207F Department of Chemical Engineering Carnegie Mellon University Pittsburgh, PA 15213 412-268-7803 @johnkitchin http

Re: [O] org latex/beamer math escape in a ``surrounding context'': $a$'s

uot; do a math-escape. Is there a solution for the above (I > don't want to write $a$ 's)? Or is there a rationale behind that, so I know > when to except an escape and when no? > > Martin -- Professor John Kitchin Doherty Hall A207F Department of Chemical Engineering Carnegi

Re: [O] something in between @@html:@@ and html blocks

I tried putting an Emacs function docstring as a tooltip and it had a paragraph break in it. On Friday, December 4, 2015, Nicolas Goaziou <m...@nicolasgoaziou.fr> wrote: > Hello, > > John Kitchin <jkitc...@andrew.cmu.edu <javascript:;>> writes: > > > I have

Re: [O] Citation processing via Zotero + zotxt

g-ref links with pandoc syntax as a pre-filter. Alternatively, when you export markdown documents with org-ref citations, they export as pandoc syntax right now. > > Best, > Matt -- Professor John Kitchin Doherty Hall A207F Department of Chemical Engineering Carnegie Mellon University Pit

Re: [O] something in between @@html:@@ and html blocks

it doesn't seem to work. Eric S Fraga writes: > On Friday, 4 Dec 2015 at 10:43, John Kitchin wrote: >> I have an intermediate use case that isn't covered by html snippets or >> blocks, and I wondered if there is a solution to it. >> >> What I want is to put a larg

Re: [O] something in between @@html:@@ and html blocks

Rasmus writes: > John Kitchin <jkitc...@andrew.cmu.edu> writes: > >> I have an intermediate use case that isn't covered by html snippets or >> blocks, and I wondered if there is a solution to it. >> >> What I want is to put a large tooltip on a link in html

Re: [O] LaTeX export with section number, name and page in internal links

--- Professor John Kitchin Doherty Hall A207F Department of Chemical Engineering Carnegie Mellon University Pittsburgh, PA 15213 412-268-7803 @johnkitchin http://kitchingroup.cheme.cmu.edu On Thu, Dec 3, 2015 at 6:08 AM, Ilya <filip83...@yandex.ru> wrote: > I export my Org-M

Re: [O] Citation processing via Zotero + zotxt

uld actually be the simpler route. It can parse bibtex files directly > and (as a filter within pandoc) can output formatted citations in org > format. > > As a GNU/Linux user, I would find installing zotero and all the add-ons > messier and more cumbersome than installing pandoc and/

Re: [O] refontifying links

b of third-party > dependencies to “work” at all. It’s a delicate balance... Agreed. The documents are still plain text in the end, and readable if you do it right. -- Professor John Kitchin Doherty Hall A207F Department of Chemical Engineering Carnegie Mellon University Pittsburgh, PA 15213 412-268-7803 @johnkitchin http://kitchingroup.cheme.cmu.edu

Re: [O] Citation processing via Zotero + zotxt

t (:delimiter "," :vertical-align "sup") (text (:variable "citation-number" It might start making more sense to think of a lisp based citation processor. It might even address some limitations of bib(la)tex. Now, about those cross-references a

Re: [O] a post-processing export hook?

Rasmus writes: > John Kitchin <jkitc...@andrew.cmu.edu> writes: > >> Hi all, >> >> I tried using org-export-before-parsing-hook to modify an org-file prior >> to export to replace some regular expressions with html. >> >> I ran i

Re: [O] asynchronous python code blocks in org-mode

Tom writes: > On Mon, Nov 30, 2015 at 1:06 PM, John Kitchin <jkitc...@andrew.cmu.edu> > wrote: > >> I have not thought about sessions and asynchronous execution. It would >> mean a queue and a different way to pass code to the process, which I >> have not tho

[O] a post-processing export hook?

d have used a filter on a paragraph, which is where most of the things I was modifying were. Is there some other way I could have done this? -- Professor John Kitchin Doherty Hall A207F Department of Chemical Engineering Carnegie Mellon University Pittsburgh, PA 15213 412-268-7803 @johnkitchin http://kitchingroup.cheme.cmu.edu

Re: [O] asynchronous python code blocks in org-mode

Karl Voit writes: > * John Kitchin <jkitc...@andrew.cmu.edu> wrote: >> Hi everyone, > > Hi John! > >> I worked out some ideas on running Python blocks asynchronously in >> org-mode, while seeing the output of the code, /and/ still capturing the >> outp

Re: [O] Scripting with org-mode

able to execute the entire file, and produce > one single output. > > Is this possible? > > SK -- Professor John Kitchin Doherty Hall A207F Department of Chemical Engineering Carnegie Mellon University Pittsburgh, PA 15213 412-268-7803 @johnkitchin http://kitchingroup.cheme.cmu.edu

Re: [O] Scripting with org-mode

of course there is a simpler way ;) John --- Professor John Kitchin Doherty Hall A207F Department of Chemical Engineering Carnegie Mellon University Pittsburgh, PA 15213 412-268-7803 @johnkitchin http://kitchingroup.cheme.cmu.edu On Mon, Nov 30, 2015 at 3:22 PM

Re: [O] inserting a copy of an element at point (timestamps)

(org-timestamp-change 7 'dat) ))) > ) > > What's the real solution? Thank you, > Matt -- Professor John Kitchin Doherty Hall A207F Department of Chemical Engineering Carnegie Mellon University Pittsburgh, PA 15213 412-268-7803 @johnkitchin http://kitchingroup.cheme.cmu.edu

Re: [O] Citation processing via Zotero + zotxt

be independent of the citation processing, and is only related to the functions available when you click on a citation. Notes can be accessed via helm-bibtex too. > > Best regards, > Martin Yrjölä > > [1] https://github.com/jkitchin/org-ref > [2] https://www.zotero.org/support/d

[O] refontifying links

][Some text I want colored]] and have it show in my buffer in Orangered1. Any thoughts? -- Professor John Kitchin Doherty Hall A207F Department of Chemical Engineering Carnegie Mellon University Pittsburgh, PA 15213 412-268-7803 @johnkitchin http://kitchingroup.cheme.cmu.edu

Re: [O] org-preview-latex-fragment for @@latex:stuff@@?

It can be, but a more typical one I use is \ce{Cu_{1-x}Pd_{x}} and that has to be wrapped in @@latex:...@@. John --- Professor John Kitchin Doherty Hall A207F Department of Chemical Engineering Carnegie Mellon University Pittsburgh, PA 15213 412-268-7803

Re: [O] org-preview-latex-fragment for @@latex:stuff@@?

are good ones though, there could be many things that don't make sense to preview in these. Rasmus writes: > John Kitchin <jkitc...@andrew.cmu.edu> writes: > >> Should the inline latex fragments like @@latex:\ce{H_{2}O}@@ be >> previewable in org files with org-preview-latex-fr

Re: [O] Conditional link export?

inserted as raw Org text. This is the > same as writing text in an Org document before exporting it. As > a consequence, these results are escaped during the export process. > > You could wrap the results in an export snippet, e.g., > > (format "@@html:http://some.place/%s\;>%s@@" arg1 arg2) > > > Regards, -- Professor John Kitchin Doherty Hall A207F Department of Chemical Engineering Carnegie Mellon University Pittsburgh, PA 15213 412-268-7803 @johnkitchin http://kitchingroup.cheme.cmu.edu

Re: [O] How can I wrap the subscript into a math environment in Org-mode?

ironment) > However, the results exported are like B\($_{\text{25}}$ \). It seems > like the subscript filter contents only contain _25 part. Does anyone > have some solutions about this? -- Professor John Kitchin Doherty Hall A207F Department of Chemical Engineering Carnegie Mellon University Pittsburgh, PA 15213 412-268-7803 @johnkitchin http://kitchingroup.cheme.cmu.edu

[O] adding attributes to tables in results

echo $data #+end_src #+BEGIN_SRC emacs-lisp :post attr_wrap(*this*) (list (+ 2 4) 4 5) #+END_SRC #+RESULTS: : #+ATTR_LATEX: :environment longtable : 6 4 5 Does anyone know a way to have a code block output a table with attributes (besides printing them as strings with raw output)? -- Professor

Re: [O] adding attributes to tables in results

Thanks. That gets me pretty close to what I want. Charles C. Berry writes: > On Sat, 21 Nov 2015, John Kitchin wrote: > >> Hi everyone, >> >> I am trying to figure out a way to automatically add some attributes to >> tables generated from code blocks. >> >

Re: [O] adding attributes to tables in results

C-c ' on them to get them in org, and I also want them functional in the org-buffer too. Vikas Rawal writes: > John, > > Just curious. What advantage do you see in adding these attributes to the > code block, and not directly to the result? > > Vikas > > > >>

[O] org-preview-latex-fragment for @@latex:stuff@@?

Should the inline latex fragments like @@latex:\ce{H_{2}O}@@ be previewable in org files with org-preview-latex-fragment? They don't seem to be, and just wanted to confirm that is intended behavior. Thanks, -- Professor John Kitchin Doherty Hall A207F Department of Chemical Engineering Carnegie

Re: [O] How does org mode write to a file?

ad-file tip from before. However, it seems > to tangle everything in the file, then does load-file. I do want the > finer-grained control of LOB where I can specify which code blocks to make > live. But then maybe I should just roll my own.. . . . > > LB > > > > > On Sat, N

Re: [O] adding attributes to tables in results

ronment longtable |40|51|32|51|32|51|41| Charles C. Berry writes: > On Sat, 21 Nov 2015, John Kitchin wrote: > >> I am running a search committee of 5 people. As applications come in, an >> org heading is created for each application, and I run a command to send >> o

[O] asynchronous python code blocks in org-mode

. -- Professor John Kitchin Doherty Hall A207F Department of Chemical Engineering Carnegie Mellon University Pittsburgh, PA 15213 412-268-7803 @johnkitchin http://kitchingroup.cheme.cmu.edu

Re: [O] long running processes

Your suggestions sounds possible to me. If you are up for it, I suggest trying to implement it, and offering it as a patch. Tom writes: > On Wed, Nov 18, 2015 at 2:55 PM, John Kitchin <jkitc...@andrew.cmu.edu> > wrote: > >> I am pretty sure this is not directly possible

Re: [O] long running processes

unning functions from within org-mode and see the progress of the > computation as it happens. > > Tom -- Professor John Kitchin Doherty Hall A207F Department of Chemical Engineering Carnegie Mellon University Pittsburgh, PA 15213 412-268-7803 @johnkitchin http://kitchingroup.cheme.cmu.edu

Re: [O] images rendering after execution?

gt; blocks inline immediately? None of the options I found in the documentation > seemed to work. > > Thanks, > Tom -- Professor John Kitchin Doherty Hall A207F Department of Chemical Engineering Carnegie Mellon University Pittsburgh, PA 15213 412-268-7803 @johnkitchin http://kitchingroup.cheme.cmu.edu

Re: [O] Emacs+org-mode in a Docker?

This sounds a lot like what I have in mind. Have you tried doing this yet? Grant Rettke writes: > On Wed, Nov 4, 2015 at 7:07 PM, John Kitchin <jkitc...@andrew.cmu.edu> wrote: >> Thanks for all the notes! It looks like a not too trivial exercise that >> might have to be a

Re: [O] Org and Citations / References / Bibliography

l4_dg][org-ref video]] and > [[https://github.com/jkitchin/jmax/blob/master/org-ref.org][org-rel github > site]] for further details (John Kitchin) > #+begin_src emacs-lisp > (use-package ebib > :ensure t > ) > (use-package dash > :ensure t > ) > (use-package s &g

Re: [O] Conditional link export?

[[https://www.gnu.org/software/emacs/manual/html_node/emacs/Packages.html]] > #endif > > Oleh -- Professor John Kitchin Doherty Hall A207F Department of Chemical Engineering Carnegie Mellon University Pittsburgh, PA 15213 412-268-7803 @johnkitchin http://kitchingroup.cheme.cmu.edu

Re: [O] Org and Citations / References / Bibliography

the .bib file. > > Any suggestions what I can do, any simple / minimalistic init.el file > which I can merge into my config? > > Thanks, > > Rainer > > > Footnotes: > [1] > http://kitchingroup.cheme.cmu.edu/blog/2014/05/13/Using-org-ref-for-citations-and-re

Re: [O] Emacs+org-mode in a Docker?

it’s pretty trivial to do a backup: > > $ docker run --rm --volumes-from dbdata -v $(pwd):/backup debian tar cvf > /backup/backup.tar /var/lib/postgresql/data > > ** Above should create a tarball of everything in the volume (the official > postgres Dockerfile defines a volume at /va

Re: [O] How does Library of Babel actually work?

C and you will get 8. org-babel-load This isn't possible in other languages. You can of course have an elisp block to tangle f1.org, and then if it was python, for example, you could import the functions in a python block. John --- Professor John Kitchin Doherty

Re: [O] Babel: How to call code in one org file into another org file

file1.org: > ... > #+begin_src lisp > (defun foo () >(...)) > #+end_src > > is then called from. . . > > file2.org: > ... > #+begin_src lisp > (defun baa () > (foo)) > #+end_src > > > LB -- Professor John Kitchin Doherty Hall A207F Departm

Re: [O] Babel: How to call code in one org file into another org file

Odd. I found this I wrote before http://kitchingroup.cheme.cmu.edu/blog/2014/06/24/Using-org-files-like-el-files/ What org version do you have? On October 30, 2015, at 10:15 PM, Lawrence Bottorff <borg...@gmail.com> wrote: @John Kitchin: I can't seem to find a `org-babel-load-file`.  

[O] Emacs+org-mode in a Docker?

Has anyone tried setting up a Docker with an Emacs and org-mode setup? I am looking for some kind of solution like this to use with some students. Any thoughts? Thanks, -- Professor John Kitchin Doherty Hall A207F Department of Chemical Engineering Carnegie Mellon University Pittsburgh, PA

Re: [O] Links in comments

main text? Even within a COMMENT section say? -- Professor John Kitchin Doherty Hall A207F Department of Chemical Engineering Carnegie Mellon University Pittsburgh, PA 15213 412-268-7803 @johnkitchin http://kitchingroup.cheme.cmu.edu

Re: [O] pdflatex not found?

to ~/.tcshrc seems to fix the > >> problem. That makes sense, but leaves two questions: > >> > >> 1) Why am I able to run pdflatex (without specifying the path) just > >> from the shell running in a terminal window? > >> > >> 2) What's the point of defining the emacs exec-path, since I needed > >> to define the shell's PATH variable anyway? > >> > > FWIW, I never define exec-path explicitly: it is set from my $PATH when > emacs starts. > > -- > Nick > > > > -- John --- Professor John Kitchin Doherty Hall A207F Department of Chemical Engineering Carnegie Mellon University Pittsburgh, PA 15213 412-268-7803 @johnkitchin http://kitchingroup.cheme.cmu.edu

Re: [O] [PATCH] org-id-goto doesn't work if buffer is narrowed.

dangling markers! I guess you would want to use more global variables, so there would only be two. and hopefully you don't follow multiple id links through narrowed buffers in a row! Rasmus writes: > John Kitchin <jkitc...@andrew.cmu.edu> writes: > >> I like the idea too. I worked out

Re: [O] Org-mode reinvented?

eresting thing to implement in Org-mode. > > Best, -- Professor John Kitchin Doherty Hall A207F Department of Chemical Engineering Carnegie Mellon University Pittsburgh, PA 15213 412-268-7803 @johnkitchin http://kitchingroup.cheme.cmu.edu

Re: [O] [PATCH] org-id-goto doesn't work if buffer is narrowed.

--- Professor John Kitchin Doherty Hall A207F Department of Chemical Engineering Carnegie Mellon University Pittsburgh, PA 15213 412-268-7803 @johnkitchin http://kitchingroup.cheme.cmu.edu On Sat, Oct 24, 2015 at 8:47 AM, Rasmus <ras...@gmx.us> wrote: > John Kitchin <jkitc...@andrew.cmu

Re: [O] [PATCH] org-id-goto doesn't work if buffer is narrowed.

> > > >> On Fri, Oct 23, 2015 at 8:57 PM, Rasmus wrote: > >>> It's not obvious that org should change a—potentially—carefully > selected > >>> narrowed region. > >> > >> I agree. But, am I not explicitly asking to jump to the specified > >> item. I don't mind the widening, at least

Re: [O] [PATCH] org-id-goto doesn't work if buffer is narrowed.

orks for this case. > > You mean, display the entry in a new buffer, and any changes will be > applied onto the original entry too? -- Professor John Kitchin Doherty Hall A207F Department of Chemical Engineering Carnegie Mellon University Pittsburgh, PA 15213 412-268-7803 @johnkitchin http://kitchingroup.cheme.cmu.edu

Re: [O] Suppress export of Abstract block?

ml "html-marked.html") Lawrence Bottorff writes: > How would I suppress the > > #+begin_abstract > ... > #+end_abstract > > block content, specifically for the HTML export? :exports none doesn't seem > to work. I saw the drawer hide, but this a block, not a drawer...

Re: [O] prompt for deadline in capture template?

I just type C-c C-d and add it while the capture is open. Xebar Saram writes: > Hi guys > > i looked in the capture docu but couldn't seem to find it. anyone knows how > to prompt for deadline in capture template? > > thx! > > Z -- Professor John Kitchin Doher

Re: [O] preparing a R course in org for slides..can i link back to org document?

t;> [1] https://github.com/avdi/org-tree-slide >> >> [2] http://orgmode.org/worg/org-tutorials/non-beamer-presentations.html >> >> -- >> : Eric S Fraga (0xFFFCF67D), Emacs 24.5.1, Org release_8.3beta-1229-ge900eb >> -- Professor John Kitchin Doherty Hall A207F Department of Chemical Engineering Carnegie Mellon University Pittsburgh, PA 15213 412-268-7803 @johnkitchin http://kitchingroup.cheme.cmu.edu

Re: [O] Bizarre C-c ' error

st > needs a backquote too. This has been a hair-pulling, all-time-top-ten bug, > to be sure. And diff shows only this problem on the whole LEIBNIZ.CL file. > Any ideas what's causing this? > > Lb -- Professor John Kitchin Doherty Hall A207F Department of Chemical Engineering Carnegie Mellon University Pittsburgh, PA 15213 412-268-7803 @johnkitchin http://kitchingroup.cheme.cmu.edu

Re: [O] function to cycle through specific org files?

ant to cycle (ie open and show in the emacs window) through: > A.org B.org C.org > i want to use ie A-left and A-right to open (if not already) and cycle > through these files. any one has such a system? > > best > > Z -- Professor John Kitchin Doherty Hall A207F Depart

[O] org-map-entries on heading?

tml that ITEM should contain the headline with stars, but it doesn't seem to be accessible in org-map-entries. Thanks. -- Professor John Kitchin Doherty Hall A207F Department of Chemical Engineering Carnegie Mellon University Pittsburgh, PA 15213 412-268-7803 @johnkitchin http://kitchingroup.cheme.cmu.edu

[O] :point-entered and :point-left on text in org-mode?

, or display a message about the link. I think it would be better than using post-command-hook, and simpler than the idle-timer approach I have been using. Is there some other canonical way to execute code on entering a region? Thanks! -- Professor John Kitchin Doherty Hall A207F Department

Re: [O] line numbers in org src blocks?

I meant in the org-file buffer. The numbers in export are pretty straightforward. I made a partial solution here: http://kitchingroup.cheme.cmu.edu/blog/2015/10/13/Line-numbers-in-org-mode-code-blocks/ It works pretty well I think. Nick Dokos writes: > John Kitchin andrew.cmu.edu>

[O] line numbers in org src blocks?

Does anyone know if it is possible to get line numbering only in code blocks in an org-file? -- Professor John Kitchin Doherty Hall A207F Department of Chemical Engineering Carnegie Mellon University Pittsburgh, PA 15213 412-268-7803 @johnkitchin http://kitchingroup.cheme.cmu.edu

Re: [O] multi letter agenda commands

e=\"Asian\"" > ( > (org-agenda-files '("~/org/files/agenda/food.org")) > (org-agenda-sorting-strategy '(priority-down)) ;; Sort by priority > where priority goes first. > > ) > ) > > where i would press f then a or c to launch the appropriate agenda command > > thx so much > > Z -- Professor John Kitchin Doherty Hall A207F Department of Chemical Engineering Carnegie Mellon University Pittsburgh, PA 15213 412-268-7803 @johnkitchin http://kitchingroup.cheme.cmu.edu

Re: [O] Minning Org-files

making the search term a variable ? > >> On Oct 9, 2015, at 1:24 PM, John Kitchin <jkitc...@andrew.cmu.edu> wrote: >> >> You can do something like this: >> >> By TODO keyword to grab the DONE entries. >> >> #+BEGIN_SRC emacs-lisp >> (let ((e

Re: [O] Minning Org-files

ng > 333 Hopeman Engineering Building > Rochester NY 14627 -- Professor John Kitchin Doherty Hall A207F Department of Chemical Engineering Carnegie Mellon University Pittsburgh, PA 15213 412-268-7803 @johnkitchin http://kitchingroup.cheme.cmu.edu

Re: [O] Suggestion for automatic latex rendering

b/yWPiuydGnjsCgOoO5B7qr4DxqK5l8+IePcRZBeZpaM767U > lEf0gRMbA030q+UXhAbbKN0Kn8s0K+SDt0yAer1/NE9PDGeObIWiOwHXz3nA61E= > =PPw+ > -END PGP SIGNATURE- -- Professor John Kitchin Doherty Hall A207F Department of Chemical Engineering Carnegie Mellon University Pittsburgh, PA 15213 412-268-7803 @johnkitchin http://kitchingroup.cheme.cmu.edu

Re: [O] Readcube

you would have to find an applescript api I think. Look at some examples in org-mac-link http://orgmode.org/worg/org-contrib/org-mac-link.html or this project https://github.com/claviclaws/org-mac-protocol. John --- Professor John Kitchin Doherty Hall A207F

Re: [O] (org-element-context) :end property

the revised unlinkify function (and a hydra with the > org-link-edit functions) are here: > > https://github.com/abo-abo/hydra/wiki/Org-mode-links > > All the best, > Tom -- Professor John Kitchin Doherty Hall A207F Department of Chemical Engineering Carnegie Mellon University Pittsburgh, PA 15213 412-268-7803 @johnkitchin http://kitchingroup.cheme.cmu.edu

Re: [O] emacs-lisp babel won't print

ced no output." in Messages. > Why can't it print out? Same code works fine in the IELM buffer. > > LB -- Professor John Kitchin Doherty Hall A207F Department of Chemical Engineering Carnegie Mellon University Pittsburgh, PA 15213 412-268-7803 @johnkitchin http://kitchingroup.cheme.cmu.edu

Re: [O] tangle on export

be compiled and actually compile it. Is there > a header I should put on the "hello" block to tangle it when I export > it? > > Thanks, > > Alan > > -- > OpenPGP Key ID : 040D0A3B4ED2E5C7 > Athmospheric CO₂ (Updated September 22, 2015, Mauna Loa Obs.): 397

Re: [O] html export list of figures

ables > > > > > > Exporting latex provides > > > > > > #+LATEX: \listoffigures > > > > > > To complement > > > > > > #+LATEX: \tableofcontents > > > #+LATEX: \listoftables > > > > > > But I s

Re: [O] html export list of figures

t; > Am I missing something? > > Thanks, > > Malcolm Cook -- Professor John Kitchin Doherty Hall A207F Department of Chemical Engineering Carnegie Mellon University Pittsburgh, PA 15213 412-268-7803 @johnkitchin http://kitchingroup.cheme.cmu.edu

Re: [O] Set or update timestamp after evaluation of code block?

; Thanks - sounds possible? But if I just use > > , > | :post (org-time-stamp-inactive) > ` > > 1) an input is required and > 2) the time stamp is inserted before the #+begin_src and makes the block > invalid. > > How can I put the time stamp in the line afte

Re: [O] Set or update timestamp after evaluation of code block?

t;) (kill-line)) (insert (concat "# Last run: " (format-time-string "[%Y-%m-%d %a %H:%M:%S]" (current-time)) (add-hook 'org-babel-after-execute-hook 'j-add-ts) ;(remove-hook 'org-babel-after-execute-hook ; 'j-add-ts) #+END_SRC

Re: [O] A book produced using Org

ion for the FAO document repository. > > Let me put the files in a github repo and share the link. > > Vikas -- Professor John Kitchin Doherty Hall A207F Department of Chemical Engineering Carnegie Mellon University Pittsburgh, PA 15213 412-268-7803 @johnkitchin http://kitchingroup.cheme.cmu.edu

Re: [O] All TODOs are equal, but some are more equal than others...

Could you just make a todo keyword called ASAP or use a tag to differentiate them? Then use a more specific tag search on the agenda? On September 20, 2015, at 7:55 AM, Marcin Borkowski wrote: Dear collective Org-mind, I really want to use the global todo list, but it's not

Re: [O] create vector-graphics with org-babel

ent. > > Another interesting thing to know is how I can change the DPI of the > produced png? > > best Max -- Professor John Kitchin Doherty Hall A207F Department of Chemical Engineering Carnegie Mellon University Pittsburgh, PA 15213 412-268-7803 @johnkitchin http://kitchingroup.cheme.cmu.edu

Re: [O] paste from clip to code block

Neat. Do you have some handy way to store a link to the source block, or jump to them? Grant Rettke writes: > On Thu, May 7, 2015 at 2:59 AM, Sebastien Vauban > <sva-n...@mygooglest.com> wrote: >> John Kitchin wrote: >>> I have these templates defined in my setup: &

Re: [O] paste from clip to code block

(label) (org-mark-ring-push) (widen) (goto-char (point-min)) (re-search-forward (regexp-quote (format "#+NAME: %s" label))) (beginning-of-line))) #+END_SRC it only works in the current file though. Grant Rettke writes: > On Mon, Sep 7, 2015 at 9:09 AM, John Kitchin &

Re: [O] shell scripts in yasnippet?

"#+BEGIN_QUOTE: %s ,#+END_QUOTE " (shell-command-to-string "fortune")) #+END_SRC #+BEGIN_SRC emacs-lisp :exports none (let ((org-export-babel-evaluate t)) (browse-url (org-html-export-to-html nil t))) #+END_SRC Tobias Frischholz writes: > On 05 Sep 2015, at 00:19, John Kitchin &

Re: [O] shell scripts in yasnippet?

write its > results in the text file. > > Specifically, I’m want to run “fortune” and put the results in a > #+BEGIN_QUOTE…#+END_QUOTE block. > Would that be possible? > Best regards, > Tobias Frischholz > > PGP PUBLIC KEY: http://pgp.mit.edu/pks/lookup?search=0xCD463AC1=ind

Re: [O] emacs & org mode for scholars questions

t; > I was really blown away by org-ref. It’s a great package. I love, for > instance, the citation displayed in the minibuffer when the cursor is > on a cite. If you need help with the MELPA packaging process, let me > know. > > best, Erik > > On Wed, 02 Sep 2015 03:40:

Re: [O] using dates as property?

> or newest first. they are visible and binary-searchable. > works perfectly for me. -- Professor John Kitchin Doherty Hall A207F Department of Chemical Engineering Carnegie Mellon University Pittsburgh, PA 15213 412-268-7803 @johnkitchin http://kitchingroup.cheme.cmu.edu

Re: [O] emacs & org mode for scholars questions

Emacs >> developers should be concentrating on to make it an even better tool >> for the scholarly community. >> >> I’m wondering if you any of you might have any suggestions about what >> you would like to see Emacs do better to support the scholarly writing >>

Re: [O] students, classes, assignments...

scraw...@gmail.com writes: > On Tue, Sep 01, 2015 at 06:13:00AM -0400, John Kitchin wrote: >> It depends a lot on what you want to be able to do. Do you need reports >> of what is completed? aggregated grades, etc... >> >> Here is what I do: https://www.youtube.com/wat

Re: [O] students, classes, assignments...

tudent with Classwork, Homework, > and Assessment headings, maybe checkboxes to indicate completion; A date-tree > in a file with the Homework and due dates--something along those lines. > > Any ideas would be appreciated. I know a bunch of you are teachers... -- Professor John Kitc

Re: [O] gnuplot: plotting students' progress of grades

ut your gnuplot code here >> #+end_src > > The problem for the OP will be that the data are in rows instead of > columns and gnuplot will only plot columns (selected using > "using"). The table needs to be transposed first (which is possible but > don't ask me how ;-)

[O] using dates as property?

:URL: http://some.place.edu/some-person :END: *** [2010-02-02 Tue] Title :PROPERTIES: :DATE: [2010-02-02 Tue] :END: *** [2015-09-01 Tue] Title... :PROPERTIES: :DATE: [2015-09-01 Tue] :END: Thanks! -- Professor John Kitchin Doherty Hall A207F Department

Re: [O] emacs org mode for scholars questions

Kitchin jkitc...@andrew.cmu.edu wrote: What would make it even better? Not imposing Helm on the user? (I know nothing about Helm, but I use Icicles.) Best, -- Professor John Kitchin Doherty Hall A207F Department of Chemical Engineering Carnegie Mellon University Pittsburgh, PA 15213 412-268-7803

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