Re: [Orgmode] Re: org-babel-R export parameters

2010-06-07 Thread Russell Adams
On Mon, Jun 07, 2010 at 12:27:46AM +0100, Dan Davison wrote: Russell Adams rlad...@adamsinfoserv.com writes: I needed the ability to view what parameters were sent to plot in R. Turns out that you can't query some things like the active filename in R, so I went back to org. Really, you

[Orgmode] Re: org-babel-R export parameters

2010-06-07 Thread Dan Davison
Russell Adams rlad...@adamsinfoserv.com writes: On Mon, Jun 07, 2010 at 12:27:46AM +0100, Dan Davison wrote: Russell Adams rlad...@adamsinfoserv.com writes: I needed the ability to view what parameters were sent to plot in R. Turns out that you can't query some things like the active

Re: [Orgmode] Re: org-babel-R export parameters

2010-06-07 Thread Russell Adams
On Mon, Jun 07, 2010 at 10:03:46AM +0100, Dan Davison wrote: Hi Russell, Thanks, that's clear. You may well be right that it would be appropriate to expose further information about the babel source block (e.g. the :file argument) to the external language. However, one general design

Re: [Orgmode] Re: org-babel-R export parameters

2010-06-07 Thread Erik Iverson
snip The idea is I want to be able to see the inline PNG image of my graph while writing, and when I export I'll point the latex exporter to the PDF. This provides a vector format for Latex, instead of a low resolution bitmap. Yes you can use PDF's as includes, and they look great because they

Re: [Orgmode] Re: org-babel-R export parameters

2010-06-07 Thread Erik Iverson
snip #+begin_src R :results file :var basename=myplot a - 1:4 pngfile - sprintf(%s.png, basename) pdffile - sprintf(%s.pdf, basename) png(pngfile) plot(a) dev.off() pdf(pdffile) plot(a) dev.off() pngfile #+end_src I like this better, and I can use dev.copy here

Re: [Orgmode] Re: org-babel-R export parameters

2010-06-07 Thread Russell Adams
On Mon, Jun 07, 2010 at 01:40:32PM -0500, Erik Iverson wrote: You could just make your complex plots functions, and then call your function in in one line. Or if you're using lattice or ggplot2, create objects representing the plot, and then plot them in one line. Funny you should mention

Re: [Orgmode] Re: org-babel-R export parameters

2010-06-07 Thread Eric Schulte
Hi Russel, Russell Adams rlad...@adamsinfoserv.com writes: [...] So my current issue is that it appears that even though I set :export none, the png is still included in my Latex output. Suggestions? The png is still included your output because the link to the png is part of your

Re: [Orgmode] Re: org-babel-R export parameters

2010-06-07 Thread Erik Iverson
I personally find this useful because it allows me to use code blocks to generate results, and then when I'm content with the file I can set :exports none to avoid re-generating the file on every export -- while retaining the existing link keeps the file included in my export. I do see how

Re: [Orgmode] Re: org-babel-R export parameters

2010-06-07 Thread Russell Adams
On Mon, Jun 07, 2010 at 12:44:43PM -0700, Eric Schulte wrote: The png is still included your output because the link to the png is part of your org-mode buffer. That explains it. So here's the fix, add # at the beginning of the line with the inline image.

Re: [Orgmode] Re: org-babel-R export parameters

2010-06-07 Thread Eric Schulte
Erik Iverson er...@ccbr.umn.edu writes: I personally find this useful because it allows me to use code blocks to generate results, and then when I'm content with the file I can set :exports none to avoid re-generating the file on every export -- while retaining the existing link keeps the

[Orgmode] Re: org-babel-R export parameters

2010-06-06 Thread Dan Davison
Russell Adams rlad...@adamsinfoserv.com writes: I needed the ability to view what parameters were sent to plot in R. Turns out that you can't query some things like the active filename in R, so I went back to org. This patch takes each parameter and converts it to a variable in R, including