[O] Table captions in LaTeX export
Aloha all,
With this input:
,--
| #+begin_margintable
| #+name: tab:eg
| #+attr_latex: :float nil :booktabs t :center nil :caption \caption{Example
table}
| | First | Second |
| |---+|
| | One | Two|
| | Three | Four |
| #+end_margintable
`--
On export to LaTeX, I get this, which lacks a caption and a label:
,
| \begin{margintable}
| \begin{tabular}{ll}
| \toprule
| First & Second\\
| \midrule
| One & Two\\
| Three & Four\\
| \bottomrule
| \end{tabular}
| \end{margintable}
`
It would be good to have :caption and label honored, even when :float
nil, like this:
,--
| \begin{margintable}
| \caption{Example table\label{tab:eg}}
| \begin{tabular}{ll}
| \toprule
| First & Second\\
| \midrule
| One & Two\\
| Three & Four\\
| \bottomrule
| \end{tabular}
| \end{margintable}
`--
Is this possible?
All the best,
Tom
--
T.S. Dye & Colleagues, Archaeologists
735 Bishop St, Suite 315, Honolulu, HI 96813
Tel: 808-529-0866, Fax: 808-529-0884
http://www.tsdye.com
[O] Problem with R source blocks
Aloha all,
Recently, some previously working R code (below) stopped working correctly.
It is not possible to produce a graphic without :session. I get a red
message in the pdf file "arguments imply differing numbers of rows: 86,
79".
With :session, I first get one of two error messages in red in the pdf
file, either "Results must be all atomic, or all data frames" or
"subscript out of bounds".
With the "subscript out of bounds" error, if I run the source code block
again, I get the expected graphic.
With the "Results must be all atomic ..." message, if I re-run the
source code block several times, I see first an error "arguments imply
differing numbers of rows: 67, 60", then on the next run "arguments imply
differing numbers of rows: 86, 79" (like running outside a :session),
then the expected graphic. Subsequent runs all produce the expected
graphic.
If I jump to the session, then print(g) works as expected, without any
error messages.
I haven't the faintest idea what might be happening, or how to debug.
#+begin_src emacs-lisp
(org-version)
#+end_src
#+results:
: 8.3beta
#+begin_src emacs-lisp
(emacs-version)
#+end_src
#+results:
: GNU Emacs 24.5.1 (x86_64-apple-darwin13.4.0, NS apple-appkit-1265.21)
: of 2015-04-18 on tennine-slave.macports.org
All the best,
Tom
,-
| #+name: dated-interval-plot
| #+header: :file ~/temp/test-plot.pdf
| #+header: :var bcal = heiau-dates
| #+header: :var base.font = 11
| #+header: :var theme = "bw"
| #+header: :var xlabel = "Years After Polynesian Discovery"
| #+header: :var ylabel = "Probability"
| #+header: :var rows=4
| #+header: :var cols=4
| #+header: :var xmin=0
| #+header: :var xmax=1000
| #+header: :width 7 :height 5
| #+header: :results graphics
| #+BEGIN_SRC R :session
| library(ggplot2)
| library(ggthemes)
| bcal.df <- data.frame(cal=numeric(0),prob=numeric(0),label=character(0))
| for (i in seq(dim(bcal)[1]))
| {
| t <- read.csv(file=bcal[i,1])
| names(t) <- c("cal","prob")
| t <- cbind(t,label=rep(bcal[i,2], dim(t)[1]))
| bcal.df <- rbind(bcal.df,t)
| }
| switch(theme,
| bw =, BW = theme_set(theme_bw(base_size=base.font)),
| grey =, gray = theme_set(theme_grey(base_size=base.font)),
| tufte = theme_set(theme_tufte(base_size=base.font)),
| calc = theme_set(theme_calc(base_size=base.font)),
| econ =, economist = theme_set(theme_economist(base_size=base.font)),
| excel = theme_set(theme_excel(base_size=base.font)),
| few = theme_set(theme_few(base_size=base.font)),
| five = theme_set(theme_fivethirtyeight(base_size=base.font)),
| google =, gdocs = theme_set(theme_gdocs(base_size=base.font)),
| ## highchart =, hc = theme_set(theme_hc(base_size=base.font)),
| inverted = theme_set(theme_igray(base_size=base.font)),
| solarized = theme_set(theme_solarized(base_size=base.font)),
| solarized2 = theme_set(theme_solarized_2(base_size=base.font)),
| ## solid = theme_set(theme_solid(base_size=base.font)),
| stata = theme_set(theme_stata(base_size=base.font,scheme="s2mono")),
| wsj = theme_set(theme_wsj(base_size=base.font)),
| theme_set(theme_bw(base_size=base.font)))
| g <- ggplot(bcal.df, aes(x=cal, y=prob))
| g <- g + geom_bar(stat='identity') + xlab(xlabel) + xlim(xmin,xmax)
| g <- g + ylab(ylabel) + facet_wrap(~ label, nrow=rows, ncol=cols)
| print(g)
| #+END_SRC
`-
--
T.S. Dye & Colleag
[O] Evaluate TBLFM in babel export to LaTeX (reposted)
Posted this request for assistance with an incomplete subject line Hi, I am learning how to use org-babel and want to export (LaTeX) a table with the final column added at final row, which should be inserted. The entire process would take place upon exporting to LaTeX/pdf Desired result (roughly speaking) | date | Description | Amount| |||---| | 6-7 | blah| 1.00 | | 6-8 | blah blah|2.00 | | ||3.00| (this row to be inserted and then column 3 added) (Also nice if a hline were inserted before the last row) The table is generated from a recutils data base and essentially this is the set up #+Name: ATable #+begin_src rec data: Foo.rec :type Bar :fields date,Description,Amount #+end_src #+TBLNAME: ATable #+TBLFM: @>$>=vsum(@I$>..@>>$>);%.2f I have read Using Code Blocks in Org Tables in the Worg Babel Introduction and searched the lists and am not sure of how to implement this. At the moment I am more interested in solving the column sum problem; i can kludge an added row using a dummy record in the database. Charlie Millar
[O] evaluate TBLFM
Hi, I am learning how to use org-babel and want to export (LaTeX) a table with the final column added at final row, which should be inserted. The entire process would take place upon exporting to LaTeX/pdf Desired result (roughly speaking) | date | Description | Amount| |||---| | 6-7 | blah| 1.00 | | 6-8 | blah blah|2.00 | | ||3.00| (this row to be inserted and then column 3 added) (Also nice if a hline were inserted before the last row) The table is generated from a recutils data base and essentially this is the set up #+Name: ATable #+begin_src rec data: Foo.rec :type Bar :fields date,Description,Amount #+end_src #+TBLNAME: ATable #+TBLFM: @>$>=vsum(@I$>..@>>$>);%.2f I have read Using Code Blocks in Org Tables in the Worg Babel Introduction and searched the lists and am not sure of how to implement this. At the moment I am more interested in solving the column sum problem; i can kludge an added row using a dummy record in the database. Charlie Millar
Re: [O] Organizing and taming hectic Academia work (faculty viewpoint)? Tips or a good guides sought after :)
I also wasn't familiar with it. I just played around with it a bit to see if you could integrate org-ref with this. You mostly can do it, but the document probably would need some final manual polishing for some things. http://kitchingroup.cheme.cmu.edu/blog/2015/06/11/ox-pandoc-org-mode-+-org-ref-to-docx-with-bibliographies/ Phillip Lord writes: > I didn't know about this -- this could be a killer feature for me. I > work a lot with biologists and medics and they are completely > word-centric. > > Phil > > Titus von der Malsburg writes: > >> On 2015-06-10 Wed 07:14, Ken Mankoff wrote: >>> I found a happy medium working in Org, exporting to LaTeX, and then >>> using Pandoc to convert to Word. >> >> With ox-pandoc you can export to .docx directly. No need to go through >> LaTeX. Ox-pandoc is pretty amazing. >> >> Titus >> >>> I would send the Word and always the canonical PDF version in case some >>> equations got messed up. This requires manually incorporating the tracked >>> changes from Word, but I've never been a fan of just clicking "accept" on >>> changes anyway, and don't mind the manual re-integration of comments. >>> >>> -k. >>> >>> >>> On 2015-06-10 at 09:49, John Kitchin wrote: Speaking as an advisor/teacher, you should do what they want if you want them to help you. You could ask if they are willing to comment on the pdf, either by hand writing on a printed version, or by pdf commenting, or maybe in the LaTeX source. But, if that is not what they want, and they cannot work with what you give them, you will not get as much feedback as you want, and you will end up creating frustration on your end and theirs. windy writes: > Another question, I am a student , I think it is a big problem that how to > exchange you article with your teacher, because the teacher will comment > or revise your article once again and again. > > However, Many teachers will not use emacs to write articles and also the > pdf file is not so convenient to do some modification, how will you deal > with the problem ? > > > > > > > > 在2015年06月09 21时21分, "John Kitchin"写道: > > you might also enjoy our youtube video: > https://www.youtube.com/watch?v=fgizHHd7nOo > > And this one on using org-mode in teaching: > https://www.youtube.com/watch?v=IsSMs-4GlT8&list=FLQp2VLAOlvq142YN3JO3y8w > > and > https://www.youtube.com/watch?v=cRUCiF2MwP4 > > See http://github.com/jkitchin/jmax for my Emacs setup for > org-mode. > > My only other advice is start learning to program in emacs-lisp. It took > me about four years to get proficient enough to write org-ref. I learned > by solving lots of little problems, and building up to bigger > problems. A lot of those are documented in my blog. Read the emacs and > emacs-lisp manuals (read them in Emacs or in a browser). They take some > time, so skip the stuff that doesn't make sense and come back to it > later if you need to. Consider getting the book at > https://www.masteringemacs.org. It isn't about org-mode, but it will > make you better at using Emacs. Consider reading Land of Lisp. It isn't > about Emacs or Emacs-lisp, but it might interest you in programming in a > lispy language, and it is a fun read. > > Buy the org-mode book: > http://www.amazon.com/Org-Mode-Reference-Manual-Organize/dp/9881327709/ref=sr_1_1?ie=UTF8&qid=1433855847&sr=8-1&keywords=org-mode. > yes, > it is the same stuff as in the manual, but it is a book you can read > anywhere anytime. > > Start by learning how to get org-mode to do some things you want. Just > do one thing a day. Every day. > > You hopefully have 30+ years of career ahead of you, so even if it takes > a few years or more to learn how to program in emacs-lisp to customize > your workflows, you still have plenty of time to benefit from it! > > Best wishes, > > Holger Wenzel writes: > >> Hi Xebar, >> >> >> >> Xebar Saram gmail.com> writes: >> >>> >>> >>> Dear Martin >>> Thanks so much for your prompt response. I did ofc do an extensive >>> google >> research yet found that as can be seen in your link most entries focus on >> either writing papers or general bits an pieces .What i am looking for >> is a >> holistic approach regarding organizing all aspects of academic life and >> to >> hear workflows of other colleagues using org for that >>> >> >> >> I'd start with: >> >> http://kitchingroup.cheme.cmu.edu/blog/2014/08/08/What-we-are-using-org- >> mode-for/ >> >> follow John Kitchin's blog there closely and read everything he posts in >> this list. >> >> Cheers, >> >> Holger >>> z >>> >>> >>> On Tue, Jun 9, 2015 at 12:16 AM,
Re: [O] Possible cache problems
On Thu, Jun 11, 2015 at 09:00:39AM +0200, Nicolas Goaziou wrote: > Suvayu Ali writes: > > > I was trying to edit the attr_latex line for the following table: > > > > #+attr_latex: > > | year | 2012 | 2018 | 2022 | 2028 | 2035 | > > | γ(°) |7 |4 | 1.3 | 0.9 | 0.6 | > > I can reproduce it. I will look into it before the end of the week. Great, I wasn't expecting to get a reproducible case so soon! Cheers, -- Suvayu Open source is the future. It sets us free.
Re: [O] Organizing and taming hectic Academia work (faculty viewpoint)? Tips or a good guides sought after :)
I didn't know about this -- this could be a killer feature for me. I work a lot with biologists and medics and they are completely word-centric. Phil Titus von der Malsburg writes: > On 2015-06-10 Wed 07:14, Ken Mankoff wrote: >> I found a happy medium working in Org, exporting to LaTeX, and then >> using Pandoc to convert to Word. > > With ox-pandoc you can export to .docx directly. No need to go through > LaTeX. Ox-pandoc is pretty amazing. > > Titus > >> I would send the Word and always the canonical PDF version in case some >> equations got messed up. This requires manually incorporating the tracked >> changes from Word, but I've never been a fan of just clicking "accept" on >> changes anyway, and don't mind the manual re-integration of comments. >> >> -k. >> >> >> On 2015-06-10 at 09:49, John Kitchin wrote: >>> Speaking as an advisor/teacher, you should do what they want if you want >>> them to help you. >>> >>> You could ask if they are willing to comment on the pdf, either by hand >>> writing on a printed version, or by pdf commenting, or maybe in the >>> LaTeX source. But, if that is not what they want, and they cannot work >>> with what you give them, you will not get as much feedback as you want, >>> and you will end up creating frustration on your end and theirs. >>> >>> windy writes: >>> Another question, I am a student , I think it is a big problem that how to exchange you article with your teacher, because the teacher will comment or revise your article once again and again. However, Many teachers will not use emacs to write articles and also the pdf file is not so convenient to do some modification, how will you deal with the problem ? 在2015年06月09 21时21分, "John Kitchin"写道: you might also enjoy our youtube video: https://www.youtube.com/watch?v=fgizHHd7nOo And this one on using org-mode in teaching: https://www.youtube.com/watch?v=IsSMs-4GlT8&list=FLQp2VLAOlvq142YN3JO3y8w and https://www.youtube.com/watch?v=cRUCiF2MwP4 See http://github.com/jkitchin/jmax for my Emacs setup for org-mode. My only other advice is start learning to program in emacs-lisp. It took me about four years to get proficient enough to write org-ref. I learned by solving lots of little problems, and building up to bigger problems. A lot of those are documented in my blog. Read the emacs and emacs-lisp manuals (read them in Emacs or in a browser). They take some time, so skip the stuff that doesn't make sense and come back to it later if you need to. Consider getting the book at https://www.masteringemacs.org. It isn't about org-mode, but it will make you better at using Emacs. Consider reading Land of Lisp. It isn't about Emacs or Emacs-lisp, but it might interest you in programming in a lispy language, and it is a fun read. Buy the org-mode book: http://www.amazon.com/Org-Mode-Reference-Manual-Organize/dp/9881327709/ref=sr_1_1?ie=UTF8&qid=1433855847&sr=8-1&keywords=org-mode. yes, it is the same stuff as in the manual, but it is a book you can read anywhere anytime. Start by learning how to get org-mode to do some things you want. Just do one thing a day. Every day. You hopefully have 30+ years of career ahead of you, so even if it takes a few years or more to learn how to program in emacs-lisp to customize your workflows, you still have plenty of time to benefit from it! Best wishes, Holger Wenzel writes: > Hi Xebar, > > > > Xebar Saram gmail.com> writes: > >> >> >> Dear Martin >> Thanks so much for your prompt response. I did ofc do an extensive google > research yet found that as can be seen in your link most entries focus on > either writing papers or general bits an pieces .What i am looking for is > a > holistic approach regarding organizing all aspects of academic life and to > hear workflows of other colleagues using org for that >> > > > I'd start with: > > http://kitchingroup.cheme.cmu.edu/blog/2014/08/08/What-we-are-using-org- > mode-for/ > > follow John Kitchin's blog there closely and read everything he posts in > this list. > > Cheers, > > Holger >> z >> >> >> On Tue, Jun 9, 2015 at 12:16 AM, M web.de> wrote: >> > >> > >> > Von: Xebar Saram gmail.com> >> > Datum: Mon, 8 Jun 2015 19:39:14 +0300 >> > An: org mode gnu.org> >> > Betreff: [O] Organizing and taming hectic Academia work (faculty > viewpoint)? >> > Tips or a good guides sought after :) >> >> Hi all >> > >> > Im a young assistant professor (in humanities and thus my horrific > coding >> > skills..basically non ) and having been using orgmode for a year or two >> > now
Re: [O] [bug] TODO [/] cookie not updating if list has inline task
On Tuesday, 9 Jun 2015 at 17:09, Nicolas Goaziou wrote: > writes: > >> coming back to my original problem: is there a consensus on how >> inline >> tasks should be treated within lists? Inline means to me that they >> should not break up a list... but I would like this resolved if >> possible. > > Fixed in a4cc9d82d8069741be64c55f35f9d3ad7e2663d5. Thank you. and thanks again! -- : Eric S Fraga (0xFFFCF67D), Emacs 24.4.1, Org release_8.3beta-802-g7e4228.dirty
Re: [O] [bug] Error evaluating table expression with relative references
On Tuesday, 9 Jun 2015 at 15:04, Nicolas Goaziou wrote: > Hello, > > Eric S Fraga writes: > >> I seem to have encountered a bug in table spreadsheet >> evaluations. See >> this example: >> >> #+begin_src org >> ,* Table evaluation with relative references >> | 1 | 2 | 3 | 6 | >> | 1 | 2 | 3 | #ERROR | >> ,#+TBLFM: @1$4=vsum($1..$3)::@2$4=vsum($1..$-1) >> #+end_src >> >> As far as I can tell, the two formulae should be equivalent? Or am >> I >> missing something silly (not unlikely ;-)? >> >> Turning on debugging shows that the first formula gets converted to >> vsum([1,2,3]) whereas the second goes to vsum((1)..(3)). > > Fixed in 3924989b4f45a5c7ff89a4f7abdebc570cbaf7e2. Thank you. Confirmed! Many thanks. -- : Eric S Fraga (0xFFFCF67D), Emacs 24.4.1, Org release_8.3beta-802-g7e4228.dirty
Re: [O] Organizing and taming hectic Academia work (faculty viewpoint)? Tips or a good guides sought after :)
Thanks. However, pandoc hardly to deal right about the figure caption number, the table (table caption) and the superscript. The export in org-mode perform well in everything except for the bibtex. I prefer the inherent method in org-mode. The command I use: pandoc --bibliography=zotero.bib --filter pandoc-citeproc 12.tex -o 12.docx By the way, I like the output style in ODT of org-exporter and I am lazy to adjust the pandoc export style... 在2015年06月11 20时18分, "Ken Mankoff"写道: On 2015-06-10 at 22:07, windy wrote: > I finnally export as ODT and change into DOC version, it seems works > well for that only no reference generate. Wish a more wisdom ODT > exporter in org-mode. Bibtex is a big problem when export into > different format files. Org -> LaTeX --Pandoc--> DOCX supports references. -k.
Re: [O] Organizing and taming hectic Academia work (faculty viewpoint)? Tips or a good guides sought after :)
Thanks for your advices. I will try to export as DOCX instead of DOC. The org-ref is a very convenient way to control the bibtex after I watch the video, through it doesn't resovle the bibtex expoort in ODT. I think in a long time, the DOC format stil a dominate format that communicate with teachers...(Sad news...) Very glad to hear the news that citation will supported by org-mode and Thanks for you and your partners' hard work! Many Thanks. 在2015年06月11 13时38分, "Rasmus"写道: windy writes: > My teacher let me give a DOC version for that only me use the > emacs in our lab (So lonely, DOC dominate the most people). You should see if you can at least "upgrade" to docx. In my experience, LO writes much better docx than doc (e.g. when using doc math is downsampled to images losing a lot of quality). > I finnally export as ODT and change into DOC version, it seems > works well for that only no reference generate. Wish a more wisdom ODT > exporter in org-mode. Bibtex is a big problem when export into > different format files. ATM I think the a lot of people use John's org-ref. For this problem I've used a home-grown "org-cite.el" that uses reftex.el to format citations in author-year style. I generate the final bibliography via tex4ht and mlentic erge the two documents in an odm. This is easy with a Makefile. Later, probably after 8.3, we'll try to include citation support in Org. Rasmus -- The second rule of Fight Club is: You do not talk about Fight Club
Re: [O] Organizing and taming hectic Academia work (faculty viewpoint)? Tips or a good guides sought after :)
On 2015-06-10 at 22:07, windy wrote: > I finnally export as ODT and change into DOC version, it seems works > well for that only no reference generate. Wish a more wisdom ODT > exporter in org-mode. Bibtex is a big problem when export into > different format files. Org -> LaTeX --Pandoc--> DOCX supports references. -k.
