Re: [O] how to get "org-version" using emacs batch mode.

[Bastien]

Supriya Sawant  writes:

> emacs --batch --eval '(org-version)'
>
> but it doesn't work. It gives me blank result.

emacs --batch --eval '(message (org-version))'

HTH,

-- 
 Bastien

Re: [O] [RFC] [PATCH] ob-core.el: allow the auto-generation of output file names for src blocks.

[Bastien]

Hi Aaron,

Aaron Ecay  writes:

> How does this sound as an algorithm:
> 1. if :file is present, behave exactly as we do now
> 2. if :file is absent but :file-ext and a #+name is present, generate a
>:file parameter from :output-dir, the #+name, and :file-ext.

I suggest this one:

1. if :file is present, behave exactly as we do now

2. if :file-ext is present:

   - if #+name is present, generate a :file parameter
 from :output-dir, #+name and :file-ext

   - otherwise, generate the :file parameter from
 :output-dir, the headline or the title or the
 current file name and :file-ext

Just falling back on something sensible when :file is absent
and :file-ext is specified.
   
> Open questions:
> 1. should :file-ext without a #+name be a no-op, or an error?

See above.

> 2. should :output-dir apply to the :file case as well?

To me yes.

In overall I think would be good, but I'd like Eric and other
babelist around here to have a look before we commit this.
So perhaps another round of patch testing will be good.

Thanks!

-- 
 Bastien

Re: [O] observations on updating to recent org

[Bastien]

Hi Greg,

Greg Troxel  writes:

>   I used to get an ID PROPERTIES entries for nodes that were exported to the
>   calendar, which was basically nodes that had an active timestamp.
>   But now I had a huge number of changes, adding ID to every node, even
>   those with no real content and just children.  Is this a feature?

Indeed.

Nicolas, do you remember why we added IDs to all headlines and not
just the one that we be exported in the .ics file?

-- 
 Bastien

Re: [O] Tried to use `org-agenda-top-headline-filter' in agenda block

[Bastien]

Hi Brady,

Brady Trainor  writes:

> Org-mode version 8.2.5h (8.2.5h-137-gc7812f-elpa @ 
> /home/iam/.emacs.d/elpa/org-20140421/)
>
> I tried to use `org-agenda-top-headline-filter'.

There was a bug here, please try again from a fresh pull of the maint
or master branch.

Thanks for reporting this,

-- 
 Bastien

[O] how to get "org-version" using emacs batch mode.

[Supriya Sawant]

How can I get the org-version on my command line?

I think using batch mode it is possible.

I tried :

emacs --batch --eval '(org-version)'


but it doesn't work. It gives me blank result.


-- 

Thanks & Regards,
Supriya Pravin Sawant

Re: [O] [BUG] Cannot open load file: ob-sh

[Vikas Rawal]

> Check local.mk for BTEST_OB_LANGUAGES: delete sh if present.
>
> Or rename sh to shell.
>
> --
>

Worked. Thanks.

Vikas

Re: [O] Exporting Code Blocks to PDF

[John Hendy]

On Tue, Apr 22, 2014 at 6:28 PM, Elasady, Summer  wrote:
> Hello Emacs World-
>
> I’m using LaTex to export documents to PDF, but the code blocks are not
> fitting to the page properly and the code is being cutoff. Is there a way to
> turn on word-wrapping for export to PDF, or to resize code blocks?
>

I don't know if there's a way to wrap, but in my one formal
programming class, the convention was only to write 80 characters or
less -- are you exceeding that? If not, and it's just a font size
thing, you can always use LaTeX to reduce the font. I frequently do
this, especially using code in Beamer presentations:

#+latex: \scriptsize
#+begin_src R blah blah

code here

#+end_src
#+latex: \normalsize

This way, the block is downsized, and then resumes to regular font
size for the rest of the document. You can use any size command you
want; I frequently use \footnotesize, \scriptsize, and \tiny. I hardly
notice a difference with \small, though you can try that, too.

> Also, does anyone have a good system for dealing with exporting large
> tables? Right now I’m just linking to a file, but I’m curious if anyone else
> is doing anything clever.
>

For tables that are /close/ in size already, I do the same thing as
above, at least if we're talking about fitting to width. You can also
flip sideways and extend over multiple pages to handle both wide and
long:

#+latex: \begin{landscape}
#+attr_latex: :environment longtable
| *alpha* | *beta* | *gamma* | *delta* |
|-++-+-|
|   1 |  1 |   1 |   1 |
|   2 |  2 |   2 |   2 |
|   3 |  3 |   3 |   3 |
|   4 |  4 |   4 |   4 |
#+latex: \end{landscape}

You can use them independently, too. Initially I tried the Org syntax
for sidewaystable, but it didn't seem to work with longtable:
- http://orgmode.org/manual/LaTeX-specific-attributes.html

As in, technically it would seem you could do:

#+attr_latex: :environment longtable :float sidewaystable

But perhaps that's more of a LaTex issue:
- 
http://tex.stackexchange.com/questions/63585/sidewaystable-together-with-longtable

Anyway, the above works, and that covers any handles I've ever used
(font, rotate, extend over multiple pages). Other than trying to
wordsmith my column names where the title exceeds the contents...
that's all the tricks up my sleeve!


John


> Thanks in advance!
>
> Summer
> s...@stowers.org
>

Re: [O] [RFC] [PATCH] ob-core.el: allow the auto-generation of output file names for src blocks.

[Aaron Ecay]

Hi Bastien,

Thanks for your feedback.

2014ko apirilak 22an, Bastien-ek idatzi zuen:

[...]

>> #+name: one
>> #+begin_src R :results file graphics :file png
>> ...
>> #+end_src
>
> What happens when there is :file png with no #+name line?

This case will be treated as before the patch: output will go to the
“png” file.  (The :output-dir property, if present, will apply.)

> Does :output-dir accept absolute or relative paths?  I'm asking
> because you speak of "subdirectory", but both should be accepted
> IMHO.

I agree.  I think the current patch does this as long as :output-dir is
an absolute pathname, but I have not tested that case.  I will

>
> Maybe there are cases where the :file value does not take an extension
> but the user still want to write the output to this file?  How would
> your patch handle this?

At present, it doesn’t.

> Looks useful to me, but ":file png" looks wrong, with too much
> implicit.  We should find something less confusing.

One option would be to use :file-ext instead, to generate a :file
parameter.  I didn’t go this route because autogenerating :file from
other parameters seemed like too much magic.  But your points in the
other direction are good.

How does this sound as an algorithm:
1. if :file is present, behave exactly as we do now
2. if :file is absent but :file-ext and a #+name is present, generate a
   :file parameter from :output-dir, the #+name, and :file-ext.

Open questions:
1. should :file-ext without a #+name be a no-op, or an error?
2. should :output-dir apply to the :file case as well?

--
Aaron Ecay

[O] Exporting Code Blocks to PDF

[Elasady, Summer]

Hello Emacs World-

I’m using LaTex to export documents to PDF, but the code blocks are not fitting 
to the page properly and the code is being cutoff. Is there a way to turn on 
word-wrapping for export to PDF, or to resize code blocks?

Also, does anyone have a good system for dealing with exporting large tables? 
Right now I’m just linking to a file, but I’m curious if anyone else is doing 
anything clever.

Thanks in advance!

Summer
s...@stowers.org

Re: [O] putting a element +UWa in table

[Andrea Rossetti]

Neal Becker  writes:

> The first item in my table should say '+UWa'.  This seems to upset the
> org table gods, who draw a line through my entry.
>
> How do I put such an item in a table without org table misinterpreting it?

For curiosity I played a bit on this problem.
I got no exact solution, but here's what I found.
I guess they aren't exactly *cough* the most
didactic Org tricks ever... Cheers,

  Andrea


- Test1: shows overstrike on text (as per Org syntax)

| +UWa UWb+ |

- Test 2: shows "+" in buffer if org-toggle-pretty-entities
  is enabled, but produces bad HTML export (a subscript "nil"
  appears)

| \plus_{}UWa UWb\plus_{} |

- Test 3: looks OK for HTML, Latex, ASCII export

#+MACRO: myplus @@html:+latex:+ascii:+@@

| {{{myplus}}}UWa UWb{{{myplus}}} |

Re: [O] latex export of \ce question

[John Hendy]

On Mon, Apr 21, 2014 at 6:35 PM, John Kitchin  wrote:
> Hi all,
>
> I often have to use the mhchem latex package to write chemical formulas, and
> I have teh following export issue.
>
> If I have this in an org file:
>
> \ce{ABO_3}
>
> \ce{ABO_{3-\delta}}
>

I've taken to using \( \) around LaTeX stuff. I also have:

#+options: tex:t

so that might be required. I tried your example, and I get an
undefined control sequence error (not sure why...), but it seems to
look right in the PDF. Just another option that might work for you
(maybe less typing for one-off situations?).

\(\ce{ABO_{3-\delta}}\)



John

> this exports as
> \ce{ABO_3}
>
> \ce\{ABO$_{\text{3-}\delta}$\}
>
> The first one is fine, but the second one is not.  The nested {} seems to
> mess it up. Is there a way to get this to export correctly?
>
> thanks,
>
> John
>
> ---
> John Kitchin
> Associate Professor
> Doherty Hall A207F
> Department of Chemical Engineering
> Carnegie Mellon University
> Pittsburgh, PA 15213
> 412-268-7803
> http://kitchingroup.cheme.cmu.edu
>

[O] My first union in an agenda block

[Brady Trainor]

I struggled to get union of cases in an agenda block. I was able to work 
from examples by Bernt Hansen at


http://doc.norang.ca/org-mode.html#CustomAgendaViewSetup

and

http://doc.norang.ca/org-mode.html#Projects,

and make the following small example, which may be useful to folks just 
getting into Org-mode and Emacs, and want to be aware of how you can 
combine cases into your agenda block. (Union as opposed to intersection, 
OR vs AND.)


It should be straightforward to make various cases, or even finally get 
familiar with the agenda filtering commands at


http://orgmode.org/manual/Filtering_002flimiting-agenda-items.html.


#+BEGIN_SRC emacs-lisp
(defun appts-nil-not-appt-next-headline ()
  (let ((next-headline (save-excursion (outline-next-heading
(if (or ;; (string= "circus-act" (org-get-org-file))
(string= "circus-act" (org-get-category))
(member "appt" (org-get-tags-at))
(member "plans" (org-get-tags-at))
(member "social" (org-get-tags-at)))
nil
  next-headline)))
#+END_SRC

(You may need this so that function org-add-agenda-custom-commands does 
not create error.)

#+BEGIN_SRC emacs-lisp
(require 'org-agenda)
#+END_SRC

#+BEGIN_SRC emacs-lisp
(org-add-agenda-custom-command
 '("c" "calendar"
   agenda ""
   ((org-agenda-skip-function 'appts-nil-not-appt-next-headline)
)))
#+END_SRC

Please let me know if you see any changes I should make in my strategy 
or code. (I've not made it a priority, but I think I shouldn't have the 
three occurrences of `(member "" (org-get-tags-at))'.)


Also, no telling when I'll get the chance to understand the examples at


http://stackoverflow.com/questions/20715106/org-agenda-regexp-search-categories



Brady

[O] Tried to use `org-agenda-top-headline-filter' in agenda block

[Brady Trainor]

Org-mode version 8.2.5h (8.2.5h-137-gc7812f-elpa @ 
/home/iam/.emacs.d/elpa/org-20140421/)


I tried to use `org-agenda-top-headline-filter'.

I have a tree as follows:
  
 /
|   * diary-sunrise, diary-sunset
|   %%(diary-sunrise)
|   %%(diary-sunset)
 \


The syntax I tried was:

(org-agenda-top-headline-filter "diary-sunrise, diary-sunset")

That is, in the following: (might need `(require 'org-agenda)'.)

#+BEGIN_SRC emacs-lisp
(org-add-agenda-custom-command
 '("zs" "sunrise, sunset"
   agenda ""
   ((org-agenda-files '("/e/org/zeus.org"))
(org-agenda-prefix-format "%t %s")
(org-agenda-span 'week)
(org-agenda-start-on-weekday nil)
(org-agenda-use-time-grid 'nil)
(org-agenda-top-headline-filter '("diary-sunrise, diary-sunset"))
)
   ))
#+END_SRC

I'm sure I could easily use a tag, category etc, but I like being able 
to consider all the possibilities as I develop my agenda-views.



%%(Thank you always),

Brady

Re: [O] Export arrays for 'sh' code blocks when using bash

[Bastien]

Skip Collins  writes:

> On Tue, Apr 22, 2014 at 5:04 PM, Skip Collins  wrote:
>> I suspect this is a Mac-related thing.
>
> OS X 10.8.5 ships with bash version 3 which seems to have some issues
> with declaring arrays:
> http://stackoverflow.com/questions/6047648/bash-4-associative-arrays-error-declare-a-invalid-option

Mhh... okay then, thanks for mentioning it.

-- 
 Bastien

Re: [O] [RFC] [PATCH] ob-core.el: allow the auto-generation of output file names for src blocks.

[Bastien]

Hi Aaron,

thanks for the patch.

Aaron Ecay  writes:

> #+name: one
> #+begin_src R :results file graphics :file png
>   ...
> #+end_src

What happens when there is :file png with no #+name line?

> The benefit comes from the reduced duplication of information in the
> file.  It also becomes possible to use the usual property inheritance
> mechanisms (via #+PROPERTY lines or :PROPERTY: drawers) to specify
> result file types for multiple source blocks at once.
>
> This patch also introduces the :output-dir property, which can be used
> to redirect all the output from blocks in a (file/subtree) to a
> subdirectory.

Does :output-dir accept absolute or relative paths?  I'm asking
because you speak of "subdirectory", but both should be accepted
IMHO.

> The patch treats any :file args containing a period as before, so
> backwards compatibility with old files should in most cases be
> maintained.

Maybe there are cases where the :file value does not take an extension
but the user still want to write the output to this file?  How would
your patch handle this?

> If this patch looks good, I can provide tests and documentation.

Looks useful to me, but ":file png" looks wrong, with too much
implicit.  We should find something less confusing.

Thanks,

-- 
 Bastien

Re: [O] Export arrays for 'sh' code blocks when using bash

[Bastien]

Skip Collins  writes:

> On Tue, Apr 22, 2014 at 4:59 PM, Bastien  wrote:
>> You should probably check for "sh" in this local.mk line:
>
> Nope. I suspect this is a Mac-related thing.

> Here are the contents of
> my local.mk:
> ORG_ADD_CONTRIB = org-download.el*
> EMACS = /Applications/Emacs.app/Contents/MacOS/Emacs
> prefix = /usr/local/share

What happens if you remove local.mk, then git checkout master,
then make config to recreate local.mk?

-- 
 Bastien

Re: [O] Export arrays for 'sh' code blocks when using bash

[Skip Collins]

On Tue, Apr 22, 2014 at 5:04 PM, Skip Collins  wrote:
> I suspect this is a Mac-related thing.

OS X 10.8.5 ships with bash version 3 which seems to have some issues
with declaring arrays:
http://stackoverflow.com/questions/6047648/bash-4-associative-arrays-error-declare-a-invalid-option

Re: [O] Export arrays for 'sh' code blocks when using bash

[Skip Collins]

On Tue, Apr 22, 2014 at 4:59 PM, Bastien  wrote:
> You should probably check for "sh" in this local.mk line:

Nope. I suspect this is a Mac-related thing. Here are the contents of
my local.mk:
ORG_ADD_CONTRIB = org-download.el*
EMACS = /Applications/Emacs.app/Contents/MacOS/Emacs
prefix = /usr/local/share

Re: [O] Package shadowing?

[Williams, Ken]

> -Original Message-
> From: Bastien Guerry [mailto:bastiengue...@gmail.com] On Behalf Of
>
> Yes, I added a note to http://orgmode.org/elpa.html so as to make sure
> people will also check the manual.

Thanks much.

 -Ken




CONFIDENTIALITY NOTICE: This e-mail message is for the sole use of the intended 
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unauthorized review, use, disclosure or distribution of any kind is strictly 
prohibited. If you are not the intended recipient, please contact the sender 
via reply e-mail and destroy all copies of the original message. Thank you.

Re: [O] Package shadowing?

[Bastien]

Hi Williams,

"Williams, Ken"  writes:

> Thanks, got it now.  Perhaps this could be more clearly linked from
> http://orgmode.org/elpa.html ?  I was looking at that (got there from
> 1 click on the home page) and it wasn't clear to me there was anything
> else I had to do during installation or config.
>
> In addition, the /elpa.html page makes no mention of the "session
> where no .org file has been visited" text I see on the
> /Installation.html page, maybe those two sections need to be
> reconciled/consolidated?

Yes, I added a note to http://orgmode.org/elpa.html so as to make sure
people will also check the manual.

Thanks,

-- 
 Bastien

Re: [O] Export arrays for 'sh' code blocks when using bash

[Bastien]

Skip Collins  writes:

> As I wrote at the top of the report, the test fails when running make
> up2. I am using the unmodified master branch.

You should probably check for "sh" in this local.mk line:

BTEST_OB_LANGUAGES: ...

and replace is by "shell".

-- 
 Bastien

Re: [O] [BUG] Cannot open load file: ob-sh

[Bastien]

Nick Dokos  writes:

> Check local.mk for BTEST_OB_LANGUAGES: delete sh if present.

Or rename sh to shell.

-- 
 Bastien

Re: [O] [BUG] Cannot open load file: ob-sh

[Nick Dokos]

Vikas Rawal  writes:

> I am running emacs on os-x, if that is relevant.
>
> Vikas
>
> On Tue, Apr 22, 2014 at 9:52 PM, Vikas Rawal 
>  wrote:
>
> I tried to update my org-mode using make up2 but got an error that looks 
> similar.
>
> --
>
> install -m 755 -d /tmp/tmp-orgtest
> TMPDIR=/tmp/tmp-orgtest emacs  -Q -batch --eval '(setq 
> vc-handled-backends nil org-startup-folded nil)'  --eval '(add-to-list
> '"'"'load-path (concat default-directory "lisp"))' --eval '(add-to-list 
> '"'"'load-path (concat default-directory "testing"))
> '  -l org-batch-test-init --eval '(setq org-batch-test t 
> org-babel-load-languages (quote ( (awk . t)  (C . t)  (fortran . t) 
> (maxima . t)  (lilypond . t)  (octave . t)  (python . t)  (sh . t)  (perl 
> . t)  (emacs-lisp . t)  (shell . t)  (org . t)))
> org-test-select-re "\\(org\\|ob\\)" )' -l org-loaddefs.el -l cl -l 
> testing/org-test.el -l ert -l org -l ox  --eval '
> (org-test-run-batch-tests org-test-select-re)'
> `flet' is an obsolete macro (as of 24.3); use either `cl-flet' or 
> `cl-letf'.
>
> Cannot open load file: ob-sh
> make[1]: *** [test-dirty] Error 255
> make: *** [up2] Error 2
>
> --
>
> Where does it load the list of babel languages from?
>

Check local.mk for BTEST_OB_LANGUAGES: delete sh if present.

> Vikas
>
> On Tue, Jan 21, 2014 at 5:53 PM, Eric Schulte  
> wrote:
>
> Bastien  writes:
>
> > Hi Eric,
> >
> > Eric Schulte  writes:
> >
> >> Yes, ob-sh has been renamed to ob-shell, the above should be 
> changed to
> >> (shell . t).
> >
> > Can you not it in ORG-NEWS as an incompatible change in master?
> >
> > These things tend to get easily forgotten.
> >
> > Thanks!
>
> Done.  Thanks,
>
> --
> Eric Schulte
> https://cs.unm.edu/~eschulte
> PGP: 0x614CA05D

--
Nick

Re: [O] [BUG] Cannot open load file: ob-sh

[Vikas Rawal]

I am running emacs on os-x, if that is relevant.

Vikas


On Tue, Apr 22, 2014 at 9:52 PM, Vikas Rawal <
vikasli...@agrarianresearch.org> wrote:

> I tried to update my org-mode using make up2 but got an error that looks
> similar.
>
> --
>
> install -m 755 -d /tmp/tmp-orgtest
> TMPDIR=/tmp/tmp-orgtest emacs  -Q -batch --eval '(setq vc-handled-backends
> nil org-startup-folded nil)'  --eval '(add-to-list '"'"'load-path (concat
> default-directory "lisp"))' --eval '(add-to-list '"'"'load-path (concat
> default-directory "testing"))'  -l org-batch-test-init --eval '(setq
> org-batch-test t org-babel-load-languages (quote ( (awk . t)  (C . t)
> (fortran . t)  (maxima . t)  (lilypond . t)  (octave . t)  (python . t)
> (sh . t)  (perl . t)  (emacs-lisp . t)  (shell . t)  (org . t)))
> org-test-select-re "\\(org\\|ob\\)" )' -l org-loaddefs.el -l cl -l
> testing/org-test.el -l ert -l org -l ox  --eval '(org-test-run-batch-tests
> org-test-select-re)'
> `flet' is an obsolete macro (as of 24.3); use either `cl-flet' or
> `cl-letf'.
>
> Cannot open load file: ob-sh
> make[1]: *** [test-dirty] Error 255
> make: *** [up2] Error 2
>
> --
>
> Where does it load the list of babel languages from?
>
> Vikas
>
>
> On Tue, Jan 21, 2014 at 5:53 PM, Eric Schulte wrote:
>
>> Bastien  writes:
>>
>> > Hi Eric,
>> >
>> > Eric Schulte  writes:
>> >
>> >> Yes, ob-sh has been renamed to ob-shell, the above should be changed to
>> >> (shell . t).
>> >
>> > Can you not it in ORG-NEWS as an incompatible change in master?
>> >
>> > These things tend to get easily forgotten.
>> >
>> > Thanks!
>>
>> Done.  Thanks,
>>
>> --
>> Eric Schulte
>> https://cs.unm.edu/~eschulte
>> PGP: 0x614CA05D
>>
>>
>

[O] [RFC] [PATCH] ob-core.el: allow the auto-generation of output file names for src blocks.

[Aaron Ecay]

* lisp/ob-core.el (org-babel-generate-file-param): New function.
(org-babel-get-src-block-info): Use it.
---
 lisp/ob-core.el | 33 -
 1 file changed, 32 insertions(+), 1 deletion(-)

This patch allows the autogeneration of result file names from source
block names.  Thus, instead of:

#+name: one
#+begin_src R :results file graphics :file one.png
  ...
#+end_src

One can write (with the same result, that one.png is generated):

#+name: one
#+begin_src R :results file graphics :file png
  ...
#+end_src

The benefit comes from the reduced duplication of information in the
file.  It also becomes possible to use the usual property inheritance
mechanisms (via #+PROPERTY lines or :PROPERTY: drawers) to specify
result file types for multiple source blocks at once.

This patch also introduces the :output-dir property, which can be used
to redirect all the output from blocks in a (file/subtree) to a subdirectory.

The patch treats any :file args containing a period as before, so
backwards compatibility with old files should in most cases be maintained.

If this patch looks good, I can provide tests and documentation.

Aaron

diff --git a/lisp/ob-core.el b/lisp/ob-core.el
index 1348f04..2defabf 100644
--- a/lisp/ob-core.el
+++ b/lisp/ob-core.el
@@ -282,7 +282,9 @@ Returns a list
(setq info (org-babel-parse-inline-src-block-match
 ;; resolve variable references and add summary parameters
 (when (and info (not light))
-  (setf (nth 2 info) (org-babel-process-params (nth 2 info
+  (setf (nth 2 info) (org-babel-generate-file-param
+ name
+ (org-babel-process-params (nth 2 info)
 (when info (append info (list name indent head)

 (defvar org-babel-exp-reference-buffer nil
@@ -2890,6 +2892,35 @@ For the format of SAFE-LIST, see 
`org-babel-safe-header-args'."
  (member (cdr pair) (cdr entry)))
 (t nil)))

+(defun org-babel-generate-file-param (src-name params)
+  "Calculate the filename for source block results.
+
+The directory is calculated from the :output-dir property of the
+source block; if not specified, use the current directory.
+
+If the source block has a #+NAME and the :file parameter does not
+contain any period characters, then the :file parameter is
+treated as an extension, and the output file name is the
+concatenation of the directory (as calculated above), the block
+name, a period, and the parameter value as a file extension.
+Otherwise, the :file parameter is treated as a full file name,
+and the output file name is the directory (as calculated above)
+plus the parameter value."
+  (let* ((file-cons (assq :file params))
+(file (cdr-safe file-cons))
+(dir (or (cdr-safe (assq :output-dir params)) "")))
+(when (and file (not (string= dir "")))
+  (make-directory dir t)
+  (unless (string-match "/\\'" dir)
+   (setq dir (concat dir "/"
+(cond
+ ((not file) nil)
+ ((or (string-match "\\." file) (not src-name))
+  ;; Either the file name already has an extension, or there is no
+  ;; name for this source block -> we cannot do anything
+  (setcdr file-cons (concat dir file)))
+ (t (setcdr file-cons (concat dir src-name "." file
+params))

 ;;; Used by backends: R, Maxima, Octave.
 (defun org-babel-graphical-output-file (params)
--
1.9.2

Re: [O] [BUG] Cannot open load file: ob-sh

[Vikas Rawal]

I tried to update my org-mode using make up2 but got an error that looks
similar.

--

install -m 755 -d /tmp/tmp-orgtest
TMPDIR=/tmp/tmp-orgtest emacs  -Q -batch --eval '(setq vc-handled-backends
nil org-startup-folded nil)'  --eval '(add-to-list '"'"'load-path (concat
default-directory "lisp"))' --eval '(add-to-list '"'"'load-path (concat
default-directory "testing"))'  -l org-batch-test-init --eval '(setq
org-batch-test t org-babel-load-languages (quote ( (awk . t)  (C . t)
(fortran . t)  (maxima . t)  (lilypond . t)  (octave . t)  (python . t)
(sh . t)  (perl . t)  (emacs-lisp . t)  (shell . t)  (org . t)))
org-test-select-re "\\(org\\|ob\\)" )' -l org-loaddefs.el -l cl -l
testing/org-test.el -l ert -l org -l ox  --eval '(org-test-run-batch-tests
org-test-select-re)'
`flet' is an obsolete macro (as of 24.3); use either `cl-flet' or `cl-letf'.
Cannot open load file: ob-sh
make[1]: *** [test-dirty] Error 255
make: *** [up2] Error 2

--

Where does it load the list of babel languages from?

Vikas


On Tue, Jan 21, 2014 at 5:53 PM, Eric Schulte wrote:

> Bastien  writes:
>
> > Hi Eric,
> >
> > Eric Schulte  writes:
> >
> >> Yes, ob-sh has been renamed to ob-shell, the above should be changed to
> >> (shell . t).
> >
> > Can you not it in ORG-NEWS as an incompatible change in master?
> >
> > These things tend to get easily forgotten.
> >
> > Thanks!
>
> Done.  Thanks,
>
> --
> Eric Schulte
> https://cs.unm.edu/~eschulte
> PGP: 0x614CA05D
>
>

Re: [O] org-hide-block-all

[David Masterson]

Bastien  writes:

> Hi David,
>
> David Masterson  writes:
>
>> Not sure what's going on here.  I can use org-show-block-all to show all
>> of an Org file, but using org-hide-block-all to reverse it seems to do
>> nothing.
>
> `org-show-block-all' and `org-hide-block-all' apply to blocks and it
> works fine here.
>
>> What is the proper way to open the outline completely and then
>> close it completely up?
>
> Show all:  M-x show-all RET
> Show overview: M-x org-overview RET
>
> C-u S-TAB will switch back to the startup display status.
>
> If you want blocks to be displayed when unfolding everything in the
> buffer, either you create a custom command that combines `show-all'
> and `org-show-block-all', or you simply rely on `org-cycle' (using
> TAB) and add `org-show-block-all' to `org-cycle-hook'.

Ah, I think I see now.  Thanks.

-- 
David Masterson
Programmer At Large

Re: [O] bash alias and history in code block (again)

[Nick Dokos]

OSiUX  writes:

> Hi, in the past I ask *How to use alias and bash builtin functions?*
>
> http://lists.gnu.org/archive/html/emacs-orgmode/2013-12/msg00205.html
>
> The solution:
>
>   (setq org-babel-sh-command "bash -i")
>
> But now don't work anymore :-(
>

Works for me:

(setq org-babel-sh-command "bash -i")
"bash -i"

--8<---cut here---start->8---
#+BEGIN_SRC sh :results output
   history | wc -l
   alias | wc -l
#+END_SRC

#+RESULTS:
: 1000
: 6
--8<---cut here---end--->8---

Org-mode version 8.2.6 (release_8.2.6-901-g91da1b @
/home/nick/elisp/org-mode/lisp/)

> My Org-mode version:
>
> 8.2.5h release_8.2.5h-660-gef207f
>

--
Nick

Re: [O] bash alias and history in code block (again)

[OSiUX]

El jue, 17 abr 2014, Bastien decía:

> OSiUX  writes:
>
> > #+BEGIN_SRC sh :cmdline "-i" :session :results output
>
> From a quick look, this should rather be:
>
> #+BEGIN_SRC sh :cmdline -i :session session_name :results output
>
> Can you test this?

Don't Work :-(

** DONE test =bash -i=
   CLOSED: [2014-04-22 mar 14:56]
   :LOGBOOK:
   - State "DONE"   from "NEXT"   [2014-04-22 mar 14:56]
   CLOCK: [2014-04-22 mar 14:51]--[2014-04-22 mar 14:54] =>  0:03
   :END:

   #+BEGIN_SRC sh :cmdline -i :session xyz :results output
 export | grep -i shell
 alias | wc -l
 history | wc -l
   #+END_SRC

   #+RESULTS:
   : declare -x SHELL="/bin/bash"
   : 0
   : 0

   #+BEGIN_SRC sh :session :results output
 export | grep -i shell
 alias | wc -l
 history | wc -l
   #+END_SRC

   #+RESULTS:
   : export SHELL="/bin/bash"
   : 0
   : 0

--

::

  Osiris Alejandro Gomez (OSiUX) os...@osiux.com.ar
  DC44 95D2 0D5D D544 FC1A F00F B308 A671 9237 D36C
  http://www.osiux.com.ar http://www.altermundi.net


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[O] observations on updating to recent org

[Greg Troxel]

I use org for the usual notes-to-self and TODO - nothing super fancy.  I
had been running from master of the git repo, but in 2013-01 stopped
updating, probably because I had some issue.  The recent release
provoked me to try again, and this note reports some issues.

I had been running (for no really good reason)
  commit 3a1c27060792fc095435efcaf270a6207d5d8d27
  Author: Bastien Guerry 
  Date:   Mon Jan 7 00:25:58 2013 +0100
and just updated to the head of maint:
  commit 1fa6ccab10c9f97dc9317f9c3eedea82c4cdc357
  Author: Bastien Guerry 
  Date:   Tue Apr 22 15:24:14 2014 +0200
which is just a docstring fix past release_8.2.6.

I then did an org-mobile-push, and that was as fast as I remembered.

I noticed two things:

  Exporting to ical as a single file took a really long time, perhaps a
  whole minute, whereas it used to take a second to a few seconds.  The
  resulting export did seem ok.

  I used to get an ID PROPERTIES entries for nodes that were exported to the
  calendar, which was basically nodes that had an active timestamp.
  But now I had a huge number of changes, adding ID to every node, even
  those with no real content and just children.  Is this a feature?



pgpM3JS2cm3tw.pgp
Description: PGP signature

Re: [O] export latex align to html?

[Eric S Fraga]

On Tuesday, 22 Apr 2014 at 12:55, Neal Becker wrote:
> I have an align environment:
>
> #+begin_latex
> \begin{align*}
> \Lambda= & \max_{k,l}\left|
> \sum_{i=0}^{M-1}r_{i+l}x_{i}^{*}e^{j2\pi\Delta_{f}ki}+\sum_{i=M}^{2M-1}r_{i+l}x_{i}^{*}e^{j2\pi\Delta_{f}ki}+\cdots\right|
> \\
> \approx & \max_{k,l}\left|
> \sum_{m}e^{j2\pi\Delta_{f}kmM}\sum_{i=mM}^{(m+1)M-1}r_{i+l}x_{i}^{*}\right|
> \end{align*}
> #+end_latex
>
> That exports fine to latex, but not html.  Is there a way to do this?

The attached works for me.  

You can have conditional code on the latex src block to generate raw
latex when exporting to latex and an image when exporting to
html.  Check out

  http://thread.gmane.org/gmane.emacs.orgmode/74474/focus=74762

HTH,
eric
-- 
: Eric S Fraga (0xFFFCF67D), Emacs 24.4.50.2, Org release_8.2.5h-1027-g4c0a29
* Intro
I have an align environment:

#+begin_src latex :file alignedequation.png :results raw
\begin{align*}
\Lambda= & \max_{k,l}\left|
\sum_{i=0}^{M-1}r_{i+l}x_{i}^{*}e^{j2\pi\Delta_{f}ki}+\sum_{i=M}^{2M-1}r_{i+l}x_{i}^{*}e^{j2\pi\Delta_{f}ki}+\cdots\right|
\\
\approx & \max_{k,l}\left|
\sum_{m}e^{j2\pi\Delta_{f}kmM}\sum_{i=mM}^{(m+1)M-1}r_{i+l}x_{i}^{*}\right|
\end{align*}
#+end_src

That exports fine to latex, but not html.  Is there a way to do this?
* settings

# Local Variables:
# org-export-allow-bind-keywords: t
# org-format-latex-options: (:foreground "black" :background "white" :matchers '("begin") :scale 1.0 )
# org-latex-create-formula-image-program: imagemagick
# End:

Re: [O] Package shadowing?

[Williams, Ken]

> -Original Message-
> From: Bastien Guerry [mailto:bastiengue...@gmail.com]
>
> "Williams, Ken"  writes:
>
> > Is that messed up?  I’m supposed to have version 8.2.6 at this point,
> > right?
>
> Please carefully read the Installation instructions in the manual:
>   http://orgmode.org/manual/Installation.html#Installation

Thanks, got it now.  Perhaps this could be more clearly linked from 
http://orgmode.org/elpa.html ?  I was looking at that (got there from 1 click 
on the home page) and it wasn't clear to me there was anything else I had to do 
during installation or config.

In addition, the /elpa.html page makes no mention of the "session where no .org 
file has been visited" text I see on the /Installation.html page, maybe those 
two sections need to be reconciled/consolidated?

 -Ken




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prohibited. If you are not the intended recipient, please contact the sender 
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Re: [O] Export arrays for 'sh' code blocks when using bash

[Skip Collins]

As I wrote at the top of the report, the test fails when running make
up2. I am using the unmodified master branch.

-- 
skip collins
240 687 7802


On Tue, Apr 22, 2014 at 11:37 AM, Bastien  wrote:
> Skip Collins  writes:
>
>> Test 80/480 fails when I use make up2 with Mac OS X GNU Emacs 24.3.1
>> (x86_64-apple-darwin12.5.0, Carbon Version 1.6.0 AppKit 1187.4) of
>> 2014-03-05:
>> executing Bash code block...
>> Wrote 
>> /var/folders/dt/9hkw2mj50dd566y5qs2s4b8sq962bh/T/tmp-orgtest/ob-input-32986Ogm
>> Code block evaluation complete.
>> Test ob-shell/bash-uses-assoc-arrays backtrace:
>^^^
>
> I'm not aware of such a test -- where did you get it from?
>
> --
>  Bastien

Re: [O] export latex align to html?

[Nick Dokos]

Neal Becker  writes:

> I have an align environment:
>
> #+begin_latex
> \begin{align*}
> \Lambda= & \max_{k,l}\left|
> \sum_{i=0}^{M-1}r_{i+l}x_{i}^{*}e^{j2\pi\Delta_{f}ki}+\sum_{i=M}^{2M-1}r_{i+l}x_{i}^{*}e^{j2\pi\Delta_{f}ki}+\cdots\right|
> \\
> \approx & \max_{k,l}\left|
> \sum_{m}e^{j2\pi\Delta_{f}kmM}\sum_{i=mM}^{(m+1)M-1}r_{i+l}x_{i}^{*}\right|
> \end{align*}
> #+end_latex
>
> That exports fine to latex, but not html.  Is there a way to do this?

Sure - I get perfect output by just leaving out the
#+begin_latex/#+end_latex markers. Underneath, mathjax is being used,
but I don't think I have done any customization: it should work right
out of the box.

Nick

[O] export latex align to html?

[Neal Becker]

I have an align environment:

#+begin_latex
\begin{align*}
\Lambda= & \max_{k,l}\left|
\sum_{i=0}^{M-1}r_{i+l}x_{i}^{*}e^{j2\pi\Delta_{f}ki}+\sum_{i=M}^{2M-1}r_{i+l}x_{i}^{*}e^{j2\pi\Delta_{f}ki}+\cdots\right|
\\
\approx & \max_{k,l}\left|
\sum_{m}e^{j2\pi\Delta_{f}kmM}\sum_{i=mM}^{(m+1)M-1}r_{i+l}x_{i}^{*}\right|
\end{align*}
#+end_latex

That exports fine to latex, but not html.  Is there a way to do this?

Re: [O] Org release 8.2.6

[Anthony Lander]

Many thanks Bastien, and thank you to all contributors.


On Tue, Apr 22, 2014 at 6:17 AM, Bastien  wrote:

> Dear all,
>
> I'm releasing Org 8.2.6.
>
> Thanks to everyone who contributed.
>
> Enjoy!
>
> --
>  Bastien
>
>
>

Re: [O] Package shadowing?

[Bastien]

"Williams, Ken"  writes:

> Is that messed up?  I’m supposed to have version 8.2.6 at this point,
> right?

Please carefully read the Installation instructions in the manual:
  http://orgmode.org/manual/Installation.html#Installation

When installing from ELPA, you need to make sure your packages are
activated before any Org function has been loaded, otherwise this
will load the previously available Org version.

HTH,

-- 
 Bastien

[O] Package shadowing?

[Williams, Ken]

I'm using GNU Emacs 24.3.1 on Windows 7.

I just did an elpa-install (M-x list-packages, hit 'i' on the 'org' line, and 
then hit 'x'.  In my .emacs file I had

  (require 'package)
  (add-to-list 'package-archives '("org" . "http://orgmode.org/elpa/";) t)

Everything seemed to go fine.  Then when I quit & relaunch emacs, I check the 
version and I see this:

   Org-mode version 7.9.3f (release_7.9.3f-17-g7524ef @ 
c:/Users/kwilliams/.emacs.d/elpa/org-20140422/)

Is that messed up?  I'm supposed to have version 8.2.6 at this point, right?

--
Ken Williams, Senior Research Scientist
WindLogics
http://windlogics.com




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unauthorized review, use, disclosure or distribution of any kind is strictly 
prohibited. If you are not the intended recipient, please contact the sender 
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Re: [O] Org release 8.2.6

[Bastien]

OSiUX  writes:

> Work fine, but =org-export-time-stamp-file: nil= don't work [0]
>
> Adding =#+OPTIONS: timestamp:nil= to every file work fine.

Did you try

#+BIND: org-export-time-stamp-file nil

?

> Now my blog is updated to  8.2.6 (release_8.2.6-898-g69700e)

That's from the master branch, but that's even better!

-- 
 Bastien

Re: [O] Export arrays for 'sh' code blocks when using bash

[Bastien]

Skip Collins  writes:

> Test 80/480 fails when I use make up2 with Mac OS X GNU Emacs 24.3.1
> (x86_64-apple-darwin12.5.0, Carbon Version 1.6.0 AppKit 1187.4) of
> 2014-03-05:
> executing Bash code block...
> Wrote 
> /var/folders/dt/9hkw2mj50dd566y5qs2s4b8sq962bh/T/tmp-orgtest/ob-input-32986Ogm
> Code block evaluation complete.
> Test ob-shell/bash-uses-assoc-arrays backtrace:
   ^^^

I'm not aware of such a test -- where did you get it from?

-- 
 Bastien

Re: [O] Org release 8.2.6

[OSiUX]

Work fine, but =org-export-time-stamp-file: nil= don't work [0]

Adding =#+OPTIONS: timestamp:nil= to every file work fine.

Now my blog is updated to  8.2.6 (release_8.2.6-898-g69700e)

Thanks!

[0] http://lists.gnu.org/archive/html/emacs-orgmode/2013-06/msg00460.html

-- 

::

  Osiris Alejandro Gomez (OSiUX) os...@osiux.com.ar
  DC44 95D2 0D5D D544 FC1A F00F B308 A671 9237 D36C
  http://www.osiux.com.ar http://www.altermundi.net


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Re: [O] latex export of \ce question

[John Kitchin]

Thanks. I was going crazy looking for the snippet syntax!

On Tue, Apr 22, 2014 at 8:32 AM, Rasmus  wrote:

>#+MACRO: ce @@latex:ce($1)@@
>@@latex:ce{ABO_{3-\delta}}@@
>{{{ce(ABO_{3-\delta})}}}
>



John

---
John Kitchin
Associate Professor
Doherty Hall A207F
Department of Chemical Engineering
Carnegie Mellon University
Pittsburgh, PA 15213
412-268-7803
http://kitchingroup.cheme.cmu.edu

Re: [O] Export arrays for 'sh' code blocks when using bash

[Skip Collins]

Test 80/480 fails when I use make up2 with Mac OS X GNU Emacs 24.3.1
(x86_64-apple-darwin12.5.0, Carbon Version 1.6.0 AppKit 1187.4) of
2014-03-05:
executing Bash code block...
Wrote 
/var/folders/dt/9hkw2mj50dd566y5qs2s4b8sq962bh/T/tmp-orgtest/ob-input-32986Ogm
Code block evaluation complete.
Test ob-shell/bash-uses-assoc-arrays backtrace:
  signal(ert-test-failed (((should (equal "20 cm" (org-babel-execute-s
  ert-fail(((should (equal "20 cm" (org-babel-execute-src-block))) :fo
  (if (unwind-protect (setq value-984 (apply fn-982 args-983)) (setq f
  (let (form-description-986) (if (unwind-protect (setq value-984 (app
  (let ((value-984 (quote ert-form-evaluation-aborted-985))) (let (for
  (let ((fn-982 (function equal)) (args-983 (list "20 cm" (org-babel-e
  (save-restriction (org-babel-next-src-block 2) (let ((fn-982 (functi
  (progn (org-id-goto "82320a48-3409-49d7-85c9-5de1c6d3ff87") (setq to
  (unwind-protect (progn (org-id-goto "82320a48-3409-49d7-85c9-5de1c6d
  (let ((save-match-data-internal (match-data))) (unwind-protect (prog
  (progn (let ((save-match-data-internal (match-data))) (unwind-protec
  (unwind-protect (progn (let ((save-match-data-internal (match-data))
  (let ((wconfig (current-window-configuration))) (unwind-protect (pro
  (unwind-protect (let ((wconfig (current-window-configuration))) (unw
  (let* ((id-location (org-id-find "82320a48-3409-49d7-85c9-5de1c6d3ff
  (lambda nil (let* ((id-location (org-id-find "82320a48-3409-49d7-85c
  byte-code("\306\307!q\210\310\216\311 \312\216\313\314\315\316\3
  ert--run-test-internal([cl-struct-ert--test-execution-info [cl-struc
  byte-code("\306\307!\211\211r\310\311!q\210\312 d\313\223)L\210)\3
  ert-run-test([cl-struct-ert-test ob-shell/bash-uses-assoc-arrays "Ba
  ert-run-or-rerun-test([cl-struct-ert--stats "\\(org\\|ob\\)" [[cl-st
  ert-run-tests("\\(org\\|ob\\)" #[(event-type &rest event-args) "\306
  ert-run-tests-batch("\\(org\\|ob\\)")
  ert-run-tests-batch-and-exit("\\(org\\|ob\\)")
  (let ((org-id-track-globally t) (org-test-selector (if org-test-sele
  org-test-run-batch-tests("\\(org\\|ob\\)")
  eval((org-test-run-batch-tests org-test-select-re))
  command-line-1(("--eval" "(setq vc-handled-backends nil org-startup-
  command-line()
  normal-top-level()
Test ob-shell/bash-uses-assoc-arrays condition:
(ert-test-failed
 ((should
   (equal "20 cm"
 (org-babel-execute-src-block)))
  :form
  (equal "20 cm" "50 dl")
  :value nil :explanation
  (array-elt 0
(different-atoms
 (50 "#x32" "?2")
 (53 "#x35" "?5")
   FAILED   80/480  ob-shell/bash-uses-assoc-arrays

Re: [O] org-open-file with xdg-open not working?

[Eric Abrahamsen]

Nicolas Richard  writes:

> Eric Abrahamsen  writes:
>> Presumably that's because the gnus version (eventually
>> `mm-display-external') calls xdg-open with `call-process' and org does
>> it with `start-process-shell-command'. The first is synchronous, the
>> second asynchronous, and I do remember seeing something on one of these
>> lists about difficulties with xdg-open because the process returns
>> before the file actually opens, or *doesn't* return, or some similar
>> thing the details of which I'm forgetting.
>>
>> Have other people run into this difficulty? How are you solving it?
>
> I remember having problems which I was able to solve by changing the
> value of process-connection-type to nil. Does that work for you ?

Brilliant, that did it! Very glad there was a semi-simple solution.

Thanks,
Eric

Re: [O] beamer: need to add latex for footnote citation

[Neal Becker]

Neal Becker wrote:

> Otto Pichlhöfer wrote:
> 
>> Neal Becker  gmail.com> writes:
>> 
>>> 
>>> If I edit the latex, this will do what I want:
>>> 
>>> - Extend differential detection to exploit differences over different
>>>   symbol intervals (spans)
>>> \footfullcite{gpdi}
>>> 
>>> This adds a biblatex citation as a footnote on the frame.
>>> 
>>> How can I do this within emacs org?
>>> 
>>> 
>> 
>> 
>> #+BEAMER_HEADER: \usepackage[style=nejm, url=false, backend=biber]{biblatex}
>> 
>> ...in the header works for me.
>> 
>> Regards,
> 
> My problem is how to add the citation?
> 
> If I put
> #+Latex: \footfullcite{gpdi}
> 
> Then the footnotemark (1) will appear on the start of a newline, not at the
> end of the previous sentence where it belongs.

Looks like what I needed was:

1. install emacs-bib

2. in .emacs:

(org-add-link-type "ebib" 'ebib)
(org-add-link-type 
 "footfullcite" 'ebib
 (lambda (path desc format)
   (cond
((eq format 'html)
 (format "(%s)" path))
((eq format 'latex)
 (if (or (not desc) (equal 0 (search "footfullcite:" desc)))
 (format "\\footfullcite{%s}" path)
   (format "\\footfullcite[%s][%s]{%s}"
   (cadr (split-string desc ";"))
   (car (split-string desc ";"))  path))


Then I can use [[fullfootcite:gpdi]] to get my footnote citation

Re: [O] Org release 8.2.6

[Grant Rettke]

That we will; thank you-all for your efforts.
Grant Rettke | AAAS, ACM, ASA, FSF, IEEE, SIAM, Sigma Xi
gret...@acm.org | http://www.wisdomandwonder.com/
“Wisdom begins in wonder.” --Socrates
((λ (x) (x x)) (λ (x) (x x)))
“Life has become immeasurably better since I have been forced to stop
taking it seriously.” --Thompson


On Tue, Apr 22, 2014 at 5:17 AM, Bastien  wrote:
> Dear all,
>
> I'm releasing Org 8.2.6.
>
> Thanks to everyone who contributed.
>
> Enjoy!
>
> --
>  Bastien
>
>

Re: [O] beamer: need to add latex for footnote citation

[Neal Becker]

Otto Pichlhöfer wrote:

> Neal Becker  gmail.com> writes:
> 
>> 
>> If I edit the latex, this will do what I want:
>> 
>> - Extend differential detection to exploit differences over different
>>   symbol intervals (spans)
>> \footfullcite{gpdi}
>> 
>> This adds a biblatex citation as a footnote on the frame.
>> 
>> How can I do this within emacs org?
>> 
>> 
> 
> 
> #+BEAMER_HEADER: \usepackage[style=nejm, url=false, backend=biber]{biblatex}
> 
> ...in the header works for me.
> 
> Regards,

My problem is how to add the citation?

If I put
#+Latex: \footfullcite{gpdi}

Then the footnotemark (1) will appear on the start of a newline, not at the end 
of the previous sentence where it belongs.

Re: [O] Org release 8.2.6

[Igor Sosa Mayor]

Bastien  writes:

> Dear all,
>
> I'm releasing Org 8.2.6.
>
> Thanks to everyone who contributed.
>

thanks a lot for your job!

-- 
:: Igor Sosa Mayor :: joseleopoldo1...@gmail.com ::
:: GnuPG: 0x1C1E2890   :: http://www.gnupg.org/  ::
:: jabberid: rogorido  ::::

Re: [O] beamer: need to add latex for footnote citation

[Otto Pichlhöfer]

Neal Becker  gmail.com> writes:

> 
> If I edit the latex, this will do what I want:
> 
> - Extend differential detection to exploit differences over different
>   symbol intervals (spans)
> \footfullcite{gpdi}
> 
> This adds a biblatex citation as a footnote on the frame.
> 
> How can I do this within emacs org?
> 
> 


#+BEAMER_HEADER: \usepackage[style=nejm, url=false, backend=biber]{biblatex}

...in the header works for me.

Regards,

Re: [O] org-open-file with xdg-open not working?

[Nicolas Richard]

Eric Abrahamsen  writes:
> Presumably that's because the gnus version (eventually
> `mm-display-external') calls xdg-open with `call-process' and org does
> it with `start-process-shell-command'. The first is synchronous, the
> second asynchronous, and I do remember seeing something on one of these
> lists about difficulties with xdg-open because the process returns
> before the file actually opens, or *doesn't* return, or some similar
> thing the details of which I'm forgetting.
>
> Have other people run into this difficulty? How are you solving it?

I remember having problems which I was able to solve by changing the
value of process-connection-type to nil. Does that work for you ?

-- 
Nico.

[O] beamer: need to add latex for footnote citation

[Neal Becker]

If I edit the latex, this will do what I want:

- Extend differential detection to exploit differences over different
  symbol intervals (spans)
\footfullcite{gpdi}

This adds a biblatex citation as a footnote on the frame.

How can I do this within emacs org?

Re: [O] org-open-file with xdg-open not working?

[Eric Abrahamsen]

Nick Dokos  writes:

> Eric Abrahamsen  writes:
>
>> I'm trying to open files externally (via org-attach), with a mailcap
>> that funnels most everything to xdg-open. I notice that doing this with
>> org-open-file gives me:
>>
>> Running xdg-open /home/me/path/to/file.PDF...done
>>
>> But no actual open file.
>>
>> Doing a similar thing in gnus, with the `gnus-mime-view-part-externally'
>> command, gives me a similar message about xdg-open, but then the file
>> actually opens.
>>
>> Presumably that's because the gnus version (eventually
>> `mm-display-external') calls xdg-open with `call-process' and org does
>> it with `start-process-shell-command'. The first is synchronous, the
>> second asynchronous, and I do remember seeing something on one of these
>> lists about difficulties with xdg-open because the process returns
>> before the file actually opens, or *doesn't* return, or some similar
>> thing the details of which I'm forgetting.
>>
>> Have other people run into this difficulty?
>
> Yes.
>
>> How are you solving it?
>
> By not using xdg-open: I tend to add explicit entries in my .mailcap instead.

Well pooh... not the answer I was hoping for!

Re: [O] org-open-file with xdg-open not working?

[Nick Dokos]

Eric Abrahamsen  writes:

> I'm trying to open files externally (via org-attach), with a mailcap
> that funnels most everything to xdg-open. I notice that doing this with
> org-open-file gives me:
>
> Running xdg-open /home/me/path/to/file.PDF...done
>
> But no actual open file.
>
> Doing a similar thing in gnus, with the `gnus-mime-view-part-externally'
> command, gives me a similar message about xdg-open, but then the file
> actually opens.
>
> Presumably that's because the gnus version (eventually
> `mm-display-external') calls xdg-open with `call-process' and org does
> it with `start-process-shell-command'. The first is synchronous, the
> second asynchronous, and I do remember seeing something on one of these
> lists about difficulties with xdg-open because the process returns
> before the file actually opens, or *doesn't* return, or some similar
> thing the details of which I'm forgetting.
>
> Have other people run into this difficulty?

Yes.

> How are you solving it?

By not using xdg-open: I tend to add explicit entries in my .mailcap instead.

-- 
Nick

Re: [O] putting a element +UWa in table

[Bastien]

Neal Becker  writes:

> How do I put such an item in a table without org table
> misinterpreting it?

You can't.

-- 
 Bastien

Re: [O] How do I chain babel blocks with arguments?

[Alan Schmitt]

Hi Eric,

On 2014-04-22 13:30, Eric Schulte  writes:

> Sorry, that's because the "x" should be "z".  See the following.
>
> #+name: z
> : "bar"
> #+name: test3
> #+begin_src emacs-lisp :var x="foo"
> x
> #+end_src
>
> #+RESULTS: test3
> : foo
>
> #+name:test4
> #+begin_src emacs-lisp :var y=test3(x=z)
> y
> #+end_src
>
> #+results: test4
> : "bar"
>
> #+call: test4(y="BAZ")
>
> #+RESULTS:
> : BAZ

I'm afraid I'm not being clear: I want to use the result of `test3' in
the computation done to test4. Intuitively, I want test4 to be something
like: "(lambda (x) (... (test3 x) ...))". This is why I was writing
a header of the form:

> #+begin_src emacs-lisp :var x="foo" :var y=test3(x)

where x would be given by the call to the block, and y would only be
used internally.

Thanks,

Alan

[O] putting a element +UWa in table

[Neal Becker]

The first item in my table should say '+UWa'.  This seems to upset the
org table gods, who draw a line through my entry.

How do I put such an item in a table without org table misinterpreting it?

Re: [O] latex export of \ce question

[Rasmus]

John Kitchin  writes:

> Hi all,
>
> I often have to use the mhchem latex package to write chemical formulas,
> and I have teh following export issue.
>
> If I have this in an org file:
>
> \ce{ABO_3}
>
> \ce{ABO_{3-\delta}}
>
> this exports as
> \ce{ABO_3}
>
> \ce\{ABO$_{\text{3-}\delta}$\}
>
> The first one is fine, but the second one is not.  The nested {} seems to
> mess it up. Is there a way to get this to export correctly?

You could use snippets.  If you prefer the macro syntax you could also
use that. . .  

   #+MACRO: ce @@latex:ce($1)@@
   @@latex:ce{ABO_{3-\delta}}@@
   {{{ce(ABO_{3-\delta})}}}

-- 
This is the kind of tedious nonsense up with which I will not put

Re: [O] end-of-defun odd behaviour in org mode

[Leo Liu]

On 2014-04-22 10:51 +0200, Bastien wrote:
> Yeah -- I pushed a fix, relying back again on `org-forward-element'
> and `org-backward-element'.

Thanks. seems to work fine now.

Leo

Re: [O] How do I chain babel blocks with arguments?

[Eric Schulte]

Alan Schmitt  writes:

> Hi Eric,
>
> On 2014-04-20 03:41, Eric Schulte  writes:
>
>>> --8<---cut here---start->8---
>>> #+name: z
>>> : "bar"
>>> #+name: test3
>>> #+begin_src emacs-lisp :var x="foo"
>>> x
>>> #+end_src
>>>
>>> #+name:test4
>>> #+begin_src emacs-lisp :var y=test1(x=z)
>>> y
>>> #+end_src
>>>
>>> #+results: test4
>>> : "bar"
>>>
>>> #+call: test4(z="BAZ")
>> ^
>> The above line has an error, your "z" should be an "x".
>
> I tried this change, and the argument is not taken into account:
>
> --8<---cut here---start->8---
> #+call: test4(x="BAZ")
>
> #+results:
> : "bar"
> --8<---cut here---end--->8---
>

Sorry, that's because the "x" should be "z".  See the following.

--8<---cut here---start->8---
#+name: z
: "bar"
#+name: test3
#+begin_src emacs-lisp :var x="foo"
x
#+end_src

#+RESULTS: test3
: foo

#+name:test4
#+begin_src emacs-lisp :var y=test3(x=z)
y
#+end_src

#+results: test4
: "bar"

#+call: test4(y="BAZ")

#+RESULTS:
: BAZ
--8<---cut here---end--->8---

>
> I'm not sure I mentioned it earlier, but I found a workaround using
> `org-sbe'.
>

Yes, I had noticed, but simple argument passing is also sufficient.

Best,

>
> Thanks,
>
> Alan

-- 
Eric Schulte
https://cs.unm.edu/~eschulte
PGP: 0x614CA05D

[O] Org release 8.2.6

[Bastien]

Dear all,

I'm releasing Org 8.2.6.

Thanks to everyone who contributed.

Enjoy!

-- 
 Bastien

Re: [O] HTML export to just a single file?

[Bastien]

Hi Diez,

"Diez B. Roggisch"  writes:

> Cool! Where can I get the fix?

>From the maint branch of the Git repository.
Or just wait for the new release.

>> Next time please try to find the minimal file where the bug happens:
>> that way you won't have to put example files in Dropbox (those files
>> will not be accessible one day), and you would have been able to give
>> more useful information on what is wrong.
>
> I could have attached them - but I didn't know the policies here.
>
> Also, I thought they were quite minimal ;) The .org is one KB ;)
> What could be stripped?

Nearly everything :)

I attach the minimal file that produces the bug.

Had you send this, I'd have (and you'd have) immediately seen the
problem comes from the empty #+INFOJS_OPT line.

Anyway, next time!



test.org
Description: Lotus Organizer

-- 
 Bastien

Re: [O] HTML export to just a single file?

[Diez B. Roggisch]

Hi,


On Apr 22, 2014, at 10:44 AM, Bastien wrote:

> Hi Diez,
> 
> "Diez B. Roggisch"  writes:
> 
>> sorry for the delay - easter weekend, and the machine in question is
>> at work.
> 
> No problem, bug fixed, thanks.

Cool! Where can I get the fix? 

> 
> Next time please try to find the minimal file where the bug happens:
> that way you won't have to put example files in Dropbox (those files
> will not be accessible one day), and you would have been able to give
> more useful information on what is wrong.

I could have attached them - but I didn't know the policies here.

Also, I thought they were quite minimal ;) The .org is one KB ;) What could be 
stripped?

Diez


signature.asc
Description: Message signed with OpenPGP using GPGMail

[O] org-open-file with xdg-open not working?

[Eric Abrahamsen]

I'm trying to open files externally (via org-attach), with a mailcap
that funnels most everything to xdg-open. I notice that doing this with
org-open-file gives me:

Running xdg-open /home/me/path/to/file.PDF...done

But no actual open file.

Doing a similar thing in gnus, with the `gnus-mime-view-part-externally'
command, gives me a similar message about xdg-open, but then the file
actually opens.

Presumably that's because the gnus version (eventually
`mm-display-external') calls xdg-open with `call-process' and org does
it with `start-process-shell-command'. The first is synchronous, the
second asynchronous, and I do remember seeing something on one of these
lists about difficulties with xdg-open because the process returns
before the file actually opens, or *doesn't* return, or some similar
thing the details of which I'm forgetting.

Have other people run into this difficulty? How are you solving it?

Thanks!
Eric

Re: [O] (org-insert-headline '(4)) should insert new headline before point

[Bastien]

Hi York,

thanks for coming back to this.

York Zhao  writes:

> What I meant was that with one prefix argument, the command
> `org-insert-heading' should insert a new heading *before* the
> current heading, not after.

Actually, this has little to do with the prefix argument: when
at the beginning of a heading or a list item, M-RET should add
a new heading/item *before* the current heading/item.

This is fixed now, thanks for reporting this,

PS: Using C-u M-RET will force `org-insert-heading-respect-content'
to `t', i.e. add the headline at the end of the subtree.  As Nicolas
noted, this is the same than C-RET.

-- 
 Bastien

Re: [O] showing up twice in customize group, "Org Agenda Match View"

[Bastien]

Hi Brady,

Brady Trainor  writes:

> at bottom you will find two appearances of subgroup `Org Agenda Match
> View', which I assume is not desired result.

Indeed, fixed, thanks,

-- 
 Bastien

Re: [O] end-of-defun odd behaviour in org mode

[Bastien]

Hi Leo,

Leo Liu  writes:

> Seems there is another bug after this change:
>
>C-M-e moves forward 1 and C-M-a moves back 0.
>
> org-back-to-heading does not fully satisfy the protocol of
> beginning-of-defun-function.

Yeah -- I pushed a fix, relying back again on `org-forward-element'
and `org-backward-element'.

Thanks,

-- 
 Bastien

Re: [O] org-hide-block-all

[Bastien]

Hi David,

David Masterson  writes:

> Not sure what's going on here.  I can use org-show-block-all to show all
> of an Org file, but using org-hide-block-all to reverse it seems to do
> nothing.

`org-show-block-all' and `org-hide-block-all' apply to blocks and it
works fine here.

> What is the proper way to open the outline completely and then
> close it completely up?

Show all:  M-x show-all RET
Show overview: M-x org-overview RET

C-u S-TAB will switch back to the startup display status.

If you want blocks to be displayed when unfolding everything in the
buffer, either you create a custom command that combines `show-all'
and `org-show-block-all', or you simply rely on `org-cycle' (using
TAB) and add `org-show-block-all' to `org-cycle-hook'.

HTH,

-- 
 Bastien

Re: [O] HTML export to just a single file?

[Bastien]

Hi Diez,

"Diez B. Roggisch"  writes:

> sorry for the delay - easter weekend, and the machine in question is
> at work.

No problem, bug fixed, thanks.

Next time please try to find the minimal file where the bug happens:
that way you won't have to put example files in Dropbox (those files
will not be accessible one day), and you would have been able to give
more useful information on what is wrong.

Thanks in advance,

-- 
 Bastien

Re: [O] HTML export to just a single file?

[Diez B. Roggisch]

Hi,

sorry for the delay - easter weekend, and the machine in question is at work.

On Apr 17, 2014, at 6:25 PM, Bastien wrote:

> "Diez B. Roggisch"  writes:
> 
>> I don't want that. I don't want HELP/Toggle View headers, or
>> navigational links.
> 
> There is no HELP/Toggle header in the default configuration
> 
>> I don't need to navigate the document using key-commands.
>> 
>> Just all the content laid out in a large document.
> 
> Maybe you can show what is the output of C-c C-e h h with
> emacs -Q and what you don't want in there?



This is the output:

 https://www.dropbox.com/s/ok8d6ig5gihhz6g/test.html


This is the input:

 https://www.dropbox.com/s/e7vj13bl5qlisfn/test.org

I started Emacs -Q. But it comes with it's own version of org-mode, so I had to 
do

  (setq load-path (cons "~/projects/private/emacs/lib/org/contrib/lisp" 
load-path))
  (setq load-path (cons "~/projects/private/emacs/lib/org/lisp" load-path))
  (require 'org)

Then I opened my test.org, and did C-c C-e h o

And I do not want any of the org-manager-JS-stuff in it.

Cheers,

Diez


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Description: Message signed with OpenPGP using GPGMail

Re: [O] How do I chain babel blocks with arguments?

[Alan Schmitt]

Hi Eric,

On 2014-04-20 03:41, Eric Schulte  writes:

>> --8<---cut here---start->8---
>> #+name: z
>> : "bar"
>> #+name: test3
>> #+begin_src emacs-lisp :var x="foo"
>> x
>> #+end_src
>>
>> #+name:test4
>> #+begin_src emacs-lisp :var y=test1(x=z)
>> y
>> #+end_src
>>
>> #+results: test4
>> : "bar"
>>
>> #+call: test4(z="BAZ")
> ^
> The above line has an error, your "z" should be an "x".

I tried this change, and the argument is not taken into account:

--8<---cut here---start->8---
#+call: test4(x="BAZ")

#+results:
: "bar"
--8<---cut here---end--->8---

I'm not sure I mentioned it earlier, but I found a workaround using
`org-sbe'.

Thanks,

Alan