Re: [O] Only showing part of a list

2015-03-12 Thread John Kitchin
; > * Actions [0/30] >> > - [ ] First action >> > - [ ] Second action >> > - [ ] Third action >> > - [ ] Fourth action >> > - [ ] Fifth Action >> > ... >> > >> > ​​Would that (in the future) be possible? >> -- Professor John Kitchin Doherty Hall A207F Department of Chemical Engineering Carnegie Mellon University Pittsburgh, PA 15213 412-268-7803 @johnkitchin http://kitchingroup.cheme.cmu.edu

Re: [O] Extraneous output from Python code blocks using :session option

2015-03-12 Thread John Kitchin
(sometimes >> they're dots), which don't appear if I run the same code block without >> the :session option? > > I've attached a patch that seems to fix the example you gave and the > cases from my earlier email. I don't know enough about babel's >

Re: [O] Babel language support for Mathematica

2015-03-13 Thread John Kitchin
ook, if I type > > f[x_] := x+3 > f[5] > > I get the answer 8. If I try the same code in an org-mode code block, here's > what happens: > > #+BEGIN_SRC mathematica > f[x_] := x+3 > f[5] > #+END_SRC > > #+RESULTS: > : Null > > Am I missing somethin

Re: [O] Org entry to email

2015-03-16 Thread John Kitchin
dy ? This is something I am doing quite often and this > would be really useful to me. > > Currently, I do M-h then M-w then open a new mail buffer and finally > C-y into it. I'd probably write a macro for that, but, who knows, > there can be a better solution ;-) > > Regards &

[O] org-ref update

2015-03-16 Thread John Kitchin
o now tested continuously at https://travis-ci.org/jkitchin/org-ref (although, there are no tests of substance yet, it at least checks that you can load it ;). Read more at: http://kitchingroup.cheme.cmu.edu/blog/2015/03/16/Update-on-org-ref-it-is-now-all-emacs-lisp/ -- Professor John Kitchin Departme

Re: [O] superscript without base

2015-03-19 Thread John Kitchin
ter'? > > I tried to use ^{foo} and {}^{foo} which both do not produce what I > expect in the latex export. > > \nbsp^{foo} comes close. > > Best, > Andreas -- Professor John Kitchin Doherty Hall A207F Department of Chemical Engineering Carnegie Mellon University Pitts

[O] restarting an org-babel session?

2015-03-19 Thread John Kitchin
e function that does that more or less, but it seemed like a common enough need that it might already exist. thanks, -- Professor John Kitchin Doherty Hall A207F Department of Chemical Engineering Carnegie Mellon University Pittsburgh, PA 15213 412-268-7803 @johnkitchin http://kitchingroup.cheme.cmu.edu

Re: [O] restarting an org-babel session?

2015-03-19 Thread John Kitchin
else comes up. Thomas S. Dye writes: > Ken Mankoff writes: > >> On 2015-03-19 at 10:26, John Kitchin wrote: >>> Is it possible to restart an org-babel session from the current point? >>> What I mean is if you have a largish org-file with many session blocks, >

Re: [O] restarting an org-babel session?

2015-03-19 Thread John Kitchin
command from. It is not tested too heavily, just enough for this proof of concept. j Andreas Leha writes: > Hi John, > > t...@tsdye.com (Thomas S. Dye) writes: >> Aloha all, >> >> John Kitchin writes: >> >>> That is an interesting one I did not know of. I wo

Re: [O] Bug: reftex breaking after org-mode export [8.2.10 (8.2.10-35-g19a7d6-elpa @ /Users/adamjackson/.emacs.d/elpa/org-20150323/)]

2015-03-25 Thread John Kitchin
-reftex-setup) > > At the moment I still enter reftex-mode on demand with "M-x reftex-mode". > Here is the backtrace for the error: > > Debugger entered--Lisp error: (wrong-type-argument stringp nil) > re-search-forward(nil 10001 t) > tex-main-file() > reft

Re: [O] Bug: reftex breaking after org-mode export [8.2.10 (8.2.10-35-g19a7d6-elpa @ /Users/adamjackson/.emacs.d/elpa/org-20150323/)]

2015-03-25 Thread John Kitchin
st baffling aspects is that > killing and re-opening the buffer and re-starting Reftex does not eliminate > the problem; I have to actually quit and re-open emacs. > > Regards, > Adam -- Professor John Kitchin Doherty Hall A207F Department of Chemical Engineering Carnegie Mellon University Pittsburgh, PA 15213 412-268-7803 @johnkitchin http://kitchingroup.cheme.cmu.edu

Re: [O] Org-Mode and Mac OS X advice

2015-03-26 Thread John Kitchin
know if I need any other > software for this. > > Many thanks, > > Chris -- Professor John Kitchin Doherty Hall A207F Department of Chemical Engineering Carnegie Mellon University Pittsburgh, PA 15213 412-268-7803 @johnkitchin http://kitchingroup.cheme.cmu.edu

Re: [O] org-ref and ODT export

2015-03-27 Thread John Kitchin
also http://kitchingroup.cheme.cmu.edu/blog/2015/01/29/Export-org-mode-to-docx-with-citations-via-pandoc/ Jordi Inglada writes: > John Kitchin wrote: >> >> There is no odt support. I am not sure what the best way to do that is, >> since I don't know how to format the c

Re: [O] ':post' Direct execution via Emacs Lisp

2015-03-27 Thread John Kitchin
w can I post process the > result with an Emacs Lisp function? > > Cheers, -- tProfessor John Kitchin Doherty Hall A207F Department of Chemical Engineering Carnegie Mellon University Pittsburgh, PA 15213 412-268-7803 @johnkitchin http://kitchingroup.cheme.cmu.edu

Re: [O] ':post' Direct execution via Emacs Lisp

2015-03-27 Thread John Kitchin
that makes sense. Charles C. Berry writes: > On Fri, 27 Mar 2015, John Kitchin wrote: > >> I cannot see anyway to use direct execution of emacs lisp code in this >> (and nothing I have tried actually works). Any emacs-lisp code seems to >> get evaluated before running the

Re: [O] [OT] wildcards in autocorrect?

2015-03-28 Thread John Kitchin
ot; "glob")) (define-abbrev (if p global-abbrev-table local-abbrev-table) bef aft John --- Professor John Kitchin Doherty Hall A207F Department of Chemical Engineering Carnegie Mellon University Pittsburgh, PA 15213 412-268-7803 @johnkitchin

Re: [O] [RFC] Repeat Heading movement commands

2015-03-29 Thread John Kitchin
(previous-line arg) > > (org-previous-visible-heading arg) > > (setq this-command 'org-previous-visible-heading > > > > So now I can do: > > C-c C-p, C-p, C-p... > > And repeatedly move by headlines. > > With org-use-speed-commands s

[O] getting an hline in a python generated table

2015-04-01 Thread John Kitchin
tring just shows as a row. Any thoughts on if this is possible? thanks, -- Professor John Kitchin Doherty Hall A207F Department of Chemical Engineering Carnegie Mellon University Pittsburgh, PA 15213 412-268-7803 @johnkitchin http://kitchingroup.cheme.cmu.edu

Re: [O] Best practices for dual HTML/LaTeX export for scientific papers

2015-04-02 Thread John Kitchin
be willing to > collect these into a list, which I think would be really helpful for new > users. I’d also be willing to look into adding this functionality, if someone > could suggest a good way for it to fit into the codebase/framework. > > Thank you, > David -- Profess

Re: [O] Define Keyboard Shortcut for "Open in Emacs"

2015-04-03 Thread John Kitchin
quot; in the context menu. > > How can I define a shortcut for this command (or re-use C-c C-o)? > Thanks > > Rainer -- Professor John Kitchin Doherty Hall A207F Department of Chemical Engineering Carnegie Mellon University Pittsburgh, PA 15213 412-268-7803 @johnkitchin http://kitchingroup.cheme.cmu.edu

Re: [O] getting an hline in a python generated table

2015-04-03 Thread John Kitchin
s being a > :session. If you don't use IPython/elpy in Org, then your final statement may > need to be different (add a 'return'?) to get this to work. > > Hope this helps with w/ tables + headers, > > -k. -- Professor John Kitchin Doherty Hall A207F Department of Chemical Engineering Carnegie Mellon University Pittsburgh, PA 15213 412-268-7803 @johnkitchin http://kitchingroup.cheme.cmu.edu

Re: [O] getting an hline in a python generated table

2015-04-03 Thread John Kitchin
NCOLS)]) > mytable.append(None) # hline > #+END_SRC > > #+RESULTS: > | A | B | C | D | > |---+---++-| > | 1 | 1 | 1 | 1 | > | 0 | 1 | 2 | 3 | > | 0 | 1 | 4 | 9 | > | 0 | 1 | 8 | 27 | > | 0 | 1 | 16 | 81 | > | 0 | 1 | 32 |

Re: [O] make code lines bold in export

2015-04-08 Thread John Kitchin
#+END_SRC > > Is there an - easy - way to do this? My first guess: I need to write an > export filter ... what would you think? > > Thanks, > thomas -- Professor John Kitchin Doherty Hall A207F Department of Chemical Engineering Carnegie Mellon University Pittsburgh, PA 15213 412-268-7803 @johnkitchin http://kitchingroup.cheme.cmu.edu

Re: [O] accessing source block header arguments from exporters

2015-04-11 Thread John Kitchin
shows that 'firstline=23' is treated as > a switch by babel. So if there is any language that tries to use that > as a switch (or has a regexp that matches it), there could be trouble. > > But in C it looks innocuous. > >> If I'm trying to implement a firstline feature -- source blocks with >> new line numbering (-n) beginning at a given line number -- I'd prefer >> to use :firstline, but I didn't find anything to suggest `:XXX ZZ' >> header arguments to source blocks are available to the exporters. >> > > HTH, > > Chuck -- Professor John Kitchin Doherty Hall A207F Department of Chemical Engineering Carnegie Mellon University Pittsburgh, PA 15213 412-268-7803 @johnkitchin http://kitchingroup.cheme.cmu.edu

Re: [O] HTML + RDFa export/publishing ?

2015-04-15 Thread John Kitchin
ith a link type approach that could be inline with text. John --- Professor John Kitchin Doherty Hall A207F Department of Chemical Engineering Carnegie Mellon University Pittsburgh, PA 15213 412-268-7803 @johnkitchin http://kitchingroup.cheme.cmu.edu On Wed, Apr 15,

Re: [O] paste from clip to code block

2015-04-17 Thread John Kitchin
I like this kind of keyboard shortcut: For python: Hi all > > i was wondering if anyone has every created a function to auto paste what > in the sysclip/emas clip into org but as a formatted code block? > any clue anyone? > > best > > Z -- Professor John Kitchin Doherty

Re: [O] paste from clip to code block

2015-04-17 Thread John Kitchin
you are right, I meant C-y ;) I have these templates defined in my setup: ;; * Expansions for blocks ;; add \n?\n")) ;; add \n?\n")) ;; add \n?\n")) ;; add \n?\n")) ;; add \n?\n")) John ------- Professor John Kitchin Doherty Hall A20

Re: [O] HTML + RDFa export/publishing ?

2015-04-18 Thread John Kitchin
the new citation syntax, where a new built in syntax for org-mode is being developed. That is out of my league though ;) Olivier Berger writes: > Hi. > > John Kitchin writes: > >> Can you give us an example of what you are trying to do? > > For instance, I'd like to

Re: [O] Colorization/masking of @@html: @@ in emacs editing mode ?

2015-04-20 Thread John Kitchin
them, and/or > mask them somehow visually, to not clutter the plain org editing. > > I haven't found instructions for reporting feature requests for org, so > feel free to direct me to a more appropriate venue. > > Hope ths helps. > > Best regards, -- Professor John

Re: [O] HTML + RDFa export/publishing ?

2015-04-20 Thread John Kitchin
thanks. I fixed that. I am not sure how that happened. It had to work right once ;) Olivier Berger writes: > Hi. > > John Kitchin writes: > >> Can you give us an example of what you are trying to do? I don't think >> org-mode supports this rich of behavior ou

Re: [O] HTML + RDFa export/publishing ?

2015-04-21 Thread John Kitchin
g syntax, but given a small > number of patterns, and the corresponding elisp converter code, I think > it achieves a quite interesting solution. > > Many thanks for the suggestion. > > Also, any comments much welcome (and yes, my lisp is ugly ;). > > Best regards, > > John

Re: [O] Marking/highlighting text temporarily

2015-04-24 Thread John Kitchin
--- Professor John Kitchin Doherty Hall A207F Department of Chemical Engineering Carnegie Mellon University Pittsburgh, PA 15213 412-268-7803 @johnkitchin http://kitchingroup.cheme.cmu.edu On Fri, Apr 24, 2015 at 5:38 PM, Vikas Rawal < vikasli...@agrarianresearch.org>

Re: [O] Marking/highlighting text temporarily

2015-04-26 Thread John Kitchin
Abrahamsen writes: > Eric Abrahamsen writes: > >> Vikas Rawal writes: >> >>> On 25-Apr-2015, at 6:22 am, John Kitchin >>> wrote: >>> >>> Inspired by this conversation, I hacked up this functional comment >>> link: >

Re: [O] Marking/highlighting text temporarily

2015-04-27 Thread John Kitchin
store that state somewhere! I think the pdf comment also stores the author, and maybe other information too like the date and time it was created. John --- Professor John Kitchin Doherty Hall A207F Department of Chemical Engineering Carnegie Mellon University

Re: [O] Marking/highlighting text temporarily

2015-04-27 Thread John Kitchin
Emacs anticipated this need and can help formulate comments specifically for the NSA :) https://www.gnu.org/software/emacs/manual/html_node/emacs/Mail-Amusements.html John --- Professor John Kitchin Doherty Hall A207F Department of Chemical Engineering Carnegie

Re: [O] Marking/highlighting text temporarily

2015-04-27 Thread John Kitchin
it? Eric Abrahamsen writes: > Eric Abrahamsen org-comment.el Description: application/emacs-lisp writes: > >> Vikas Rawal writes: >> >>> On 25-Apr-2015, at 6:22 am, John Kitchin >>> wrote: >>> >>> Inspired by this conversa

Re: [O] Marking/highlighting text temporarily

2015-04-28 Thread John Kitchin
Eric Abrahamsen writes: > John Kitchin writes: > >> Hi Eric, >> >> I added some functions in the attachment. they colorize the comments, >> add an org-comment menu to the org-menu, and some functions for pop to >> and delete comments from the list mode, a

Re: [O] Marking/highlighting text temporarily

2015-04-29 Thread John Kitchin
[@annote :type comment :author John Kitchin :timestamp [2015-04-29 Wed 9:26AM] :checked nil :content This is just a comment] [@annote :type insert :author John Kitchin :timestamp [2015-04-29 Wed 9:26AM] :checked nil :content some new content] [@annote :type delete :author John Kitchin :timestamp [

Re: [O] Marking/highlighting text temporarily

2015-04-29 Thread John Kitchin
t part of >> core, but it's not necessary. There's little difference between core and >> contrib as neither are included in Emacs and thus are hard to rely on. >> >> Since you use cl-lib (last I checked) it could not be part of Org before >> 8.4. > &g

Re: [O] Marking/highlighting text temporarily

2015-04-29 Thread John Kitchin
just convenient, and >> could be removed. > > It's only a concern if you want to advocate for including this in Org 8.3. > > Cheers, > Rasmus -- Professor John Kitchin Doherty Hall A207F Department of Chemical Engineering Carnegie Mellon University Pittsburgh, PA 15213 412-268-7803 @johnkitchin http://kitchingroup.cheme.cmu.edu

Re: [O] Marking/highlighting text temporarily

2015-04-29 Thread John Kitchin
to add to yet another element of the discussion, I have no problem > with the [[comment:X][Y]] in the sense of X being hidden in normal view. > > Back to your regular programming :) > > thanks, > eric -- Professor John Kitchin Doherty Hall A207F Department of Chemical Engi

Re: [O] Marking/highlighting text temporarily

2015-04-30 Thread John Kitchin
; > > [comment/Property:annotation; text] > [comment/TODO-TAG@author: annotation; text] > [comment/Property: annotation] > > [TODO-TAG/Property@Author: annotation; text] > [comment/Property: annotation] > > - Of course the / and @ operators are optional. > - I'm

Re: [O] org-link type

2015-05-13 Thread John Kitchin
There is no built in way I know of. I have done this in org-ref though, and you can see how here: https://github.com/jkitchin/org-ref/blob/master/org-ref.el#L311 John --- Professor John Kitchin Doherty Hall A207F Department of Chemical Engineering Carnegie

Re: [O] "Fortran" missing "in List of supported code block languages"?

2015-05-14 Thread John Kitchin
Fortran is supported in the sense that you can edit a block in Fortran mode. But you cannot execute a Fortran block directly afaik. You have to tangle it, compile it and then run the executable. For example like this: http://kitchingroup.cheme.cmu.edu/blog/2014/02/04/Literate-programming-exampl

Re: [O] org-ref: various directories

2015-05-14 Thread John Kitchin
--- Professor John Kitchin Doherty Hall A207F Department of Chemical Engineering Carnegie Mellon University Pittsburgh, PA 15213 412-268-7803 @johnkitchin http://kitchingroup.cheme.cmu.edu On Wed, May 13, 2015 at 3:00 PM, Michael Giepen wrote: > Hello, > > I just cannot get o

[O] New papers published on using org-mode in scientific publishing

2015-05-17 Thread John Kitchin
at project. This makes about a dozen peer-reviewed papers we have written in org-mode now. -- Professor John Kitchin Doherty Hall A207F Department of Chemical Engineering Carnegie Mellon University Pittsburgh, PA 15213 412-268-7803 @johnkitchin http://kitchingroup.cheme.cmu.edu

Re: [O] \nbsp trick to get prefixed superscript to work?

2015-05-18 Thread John Kitchin
I think what Eric is referring to is: #+latex_header: \usepackage[version=3]{mhchem} @@latex:\ce{^{147}Pm}@@ that exports for me. \nbsp{}^{147}Pm also seems to work, but might put an extra space in. you might prefer \phantom{}^{147}Pm John --- Professor John

Re: [O] [Orgmode] Unable to capture the file name generated using matplotlib

2015-05-25 Thread John Kitchin
g else that is more like you see. John ------- Professor John Kitchin Doherty Hall A207F Department of Chemical Engineering Carnegie Mellon University Pittsburgh, PA 15213 412-268-7803 @johnkitchin http://kitchingroup.cheme.cmu.edu On Mon, May 25, 2015 at 2:22 PM, Dror Atariah wrote: > On Mon,

Re: [O] Where to keep draft work?

2015-05-26 Thread John Kitchin
ls? Should it be stored under each heading? Or in a drawer? Or linked? > > I call the Agenda and see entries for the day, and then scroll to one and > press to jump to it. This would be a good place to store the text? -- Professor John Kitchin Doherty Hall A207F Department of Chemical Enginee

Re: [O] Include other sources (zotero, database) in org-mode search?

2015-05-30 Thread John Kitchin
the only way I know to do this is through something like helm, where you can use multiple sources for search. John --- Professor John Kitchin Doherty Hall A207F Department of Chemical Engineering Carnegie Mellon University Pittsburgh, PA 15213 412-268-7803

Re: [O] jabref like orgmode based solution to bibliography management (not for latex)

2015-05-30 Thread John Kitchin
hat. > > > anyone uses such a system in emacs/org and can recommend the way to > > go? > > For more details, see: https://github.com/tmalsburg/helm-bibtex > > Titus > > -- John --- Professor John Kitchin Doherty Hall A207F Department of Chemical Engineering Carnegie Mellon University Pittsburgh, PA 15213 412-268-7803 @johnkitchin http://kitchingroup.cheme.cmu.edu

Re: [O] jabref like orgmode based solution to bibliography management (not for latex)

2015-05-31 Thread John Kitchin
thanks again > > PS: Titus, do you think that the helm-bibtex APA style reference list > could be user customizable in the future? > > Z. > > On Sat, May 30, 2015 at 6:56 PM, John Kitchin > wrote: > >> >> >> On Saturday, May 30, 2015, Titus von der Mals

Re: [O] markdown export?

2015-06-03 Thread John Kitchin
t 'Invalid key' > > Do I have to install something else? > > Thanks! > -pd -- Professor John Kitchin Doherty Hall A207F Department of Chemical Engineering Carnegie Mellon University Pittsburgh, PA 15213 412-268-7803 @johnkitchin http://kitchingroup.cheme.cmu.edu

Re: [O] How to sort an unordered list?

2015-06-05 Thread John Kitchin
I can't reproduce your problem. If I put the cursor on any one of these lines and type C-c ^, it asks me how to sort the list. - 5 - 3 - 1 John --- Professor John Kitchin Doherty Hall A207F Department of Chemical Engineering Carnegie Mellon University Pitts

Re: [O] Tutorial to create a new exporter ?

2015-06-08 Thread John Kitchin
r kit to create this exporter. Do you have > something ? > > Regards -- Professor John Kitchin Doherty Hall A207F Department of Chemical Engineering Carnegie Mellon University Pittsburgh, PA 15213 412-268-7803 @johnkitchin http://kitchingroup.cheme.cmu.edu

Re: [O] Organizing and taming hectic Academia work (faculty viewpoint)? Tips or a good guides sought after :)

2015-06-09 Thread John Kitchin
cher with multiple students, paper >> > writing, grant applications, department duties, endless TODOS, endless > email i >> > would really be grateful for even non org specific tips on how other > people >> > organize all this to make life more..well..organized :) &

Re: [O] Organizing and taming hectic Academia work (faculty viewpoint)? Tips or a good guides sought after :)

2015-06-10 Thread John Kitchin
eacher will comment or > revise your article once again and again. > > However, Many teachers will not use emacs to write articles and also the pdf > file is not so convenient to do some modification, how will you deal with the > problem ? > > > > > > > >

Re: [O] Organizing and taming hectic Academia work (faculty viewpoint)? Tips or a good guides sought after :)

2015-06-11 Thread John Kitchin
cept" on >>> changes anyway, and don't mind the manual re-integration of comments. >>> >>> -k. >>> >>> >>> On 2015-06-10 at 09:49, John Kitchin wrote: >>>> Speaking as an advisor/teacher, you should do what they want

Re: [O] Organizing and taming hectic Academia work (faculty viewpoint)? Tips or a good guides sought after :)

2015-06-13 Thread John Kitchin
ing. John --- Professor John Kitchin Doherty Hall A207F Department of Chemical Engineering Carnegie Mellon University Pittsburgh, PA 15213 412-268-7803 @johnkitchin http://kitchingroup.cheme.cmu.edu On Sat, Jun 13, 2015 at 3:06 PM, Xebar Saram wrote: > Hi list and J

Re: [O] org-ref & helm-bibtex notes

2015-06-16 Thread John Kitchin
to your org-agenda-files, e.g. (setq org-agenda-files '("~/path/to/org-notes")) and it will add all org files in that directory to your agenda. If you use helm, it is probably easy to search all of the files too. -- Professor John Kitchin Doherty Hall A207F Department of Chemi

Re: [O] helm-bibtex questions

2015-06-19 Thread John Kitchin
e papers im working >> on >> >> or >> >> > invloved with by matching keyword author and prep/*other key word >> >> >> >> I use two BibTeX fields to tag entries: “keywords” for keywords >> >> describing the content of the paper (as usua

Re: [O] helm-bibtex questions

2015-06-19 Thread John Kitchin
lly >> dive into the whole latex/bibteX world >> >> best >> >> Z -- Professor John Kitchin Doherty Hall A207F Department of Chemical Engineering Carnegie Mellon University Pittsburgh, PA 15213 412-268-7803 @johnkitchin http://kitchingroup.cheme.cmu.edu

Re: [O] helm-bibtex questions

2015-06-21 Thread John Kitchin
sweet! I did not know you could do that! I will be refactoring org-ref soon to do that instead of redefining the commands! John --- Professor John Kitchin Doherty Hall A207F Department of Chemical Engineering Carnegie Mellon University Pittsburgh, PA 15213 412-268

Re: [O] helm-bibtex questions

2015-06-24 Thread John Kitchin
gt; lateX? in anycase would you mind sharing your org/latex CV template? it >> > would be helpful as a starting point for me if thats possible. >> > >> > kind regards and thanks so much in advance >> > >> > Z >> > >> > On Sun, Jun 21, 2015

Re: [O] HTML/images zipped?

2015-06-26 Thread John Kitchin
ope it helps, > Rasmus > > PS: On the list, we have talked about a .borg format that might serve for > similar situation but it's at an idea stage at the moment. -- Professor John Kitchin Doherty Hall A207F Department of Chemical Engineering Carnegie Mellon University P

Re: [O] helm-bibtex questions

2015-06-26 Thread John Kitchin
> (bibtex-set-dialect 'biblatex) > in my init but that dosent seem to do much as i still get the "journal > mandatory field missing" error. anything else i can try? > > best > > Z > > > On Thu, Jun 25, 2015 at 2:09 PM, John Kitchin > wrote: > >&

Re: [O] HTML/images zipped?

2015-06-26 Thread John Kitchin
pet? I don't seem > to be finding it on my initial searches. > > Thanks, > -pd -- Professor John Kitchin Doherty Hall A207F Department of Chemical Engineering Carnegie Mellon University Pittsburgh, PA 15213 412-268-7803 @johnkitchin http://kitchingroup.cheme.cmu.edu

Re: [O] helm-bibtex questions

2015-06-26 Thread John Kitchin
ags on-the-fly to the keywords field (see DeclareSourcemap in the >>> LaTeX headers). >>> >>> Titus >>> >>> On 2015-06-22 Mon 07:28, Xebar Saram wrote: >>> > Hi John >>> > >>> > a bit off topic, but do yo

Re: [O] HTML/images zipped?

2015-06-26 Thread John Kitchin
I am not sure. I have this in my init file: (require 'ox-org) maybe that is required for you too? Peter Davis writes: > John Kitchin writes: > >> I did something like this for org-files: >> https://github.com/jkitchin/jmax/blob/master/ox-archive.el >> >> You

Re: [O] more helm-bibtex/org-ref questions

2015-06-26 Thread John Kitchin
7; help > (https://github.com/tmalsburg/helm-bibtex/issues/53), opening a PDF that is > given in the "file" field with the directory name is now within my reach. -- Professor John Kitchin Doherty Hall A207F Department of Chemical Engineering Carnegie Mellon University Pittsburgh, PA 15213 412-268-7803 @johnkitchin http://kitchingroup.cheme.cmu.edu

Re: [O] HTML/images zipped?

2015-06-26 Thread John Kitchin
not preserve relative paths, but rather renames files and images and replaces the links in the org-file with the new names. It was too hard to figure out how to preserve the paths when I wrote this originally. Nick Dokos writes: > John Kitchin writes: > >> I did something like this f

Re: [O] comment org code block

2015-06-27 Thread John Kitchin
an org code block (with the correct comment syntax)? > > thx! > > Z -- Professor John Kitchin Doherty Hall A207F Department of Chemical Engineering Carnegie Mellon University Pittsburgh, PA 15213 412-268-7803 @johnkitchin http://kitchingroup.cheme.cmu.edu

Re: [O] helm-bibtex questions

2015-06-27 Thread John Kitchin
t; > when i use the org ref clean i still get > > bibtex-format-entry: Mandatory field `journal' is missing > > > also in the emacs menu the entry type is still bibtex. i tried restarting > emacs and still no go. > > any clue? also do you prefer I continue this discuss

Re: [O] comment org code block

2015-06-27 Thread John Kitchin
if any lisp wizards out there can modify Johns code and make it > auto select all lines *inside* the current block and then comment it? could > be useful to other people i assume. > > thx again > > > > On Sat, Jun 27, 2015 at 2:32 PM, John Kitchin > wrote: > &

Re: [O] helm-bibtex questions

2015-06-30 Thread John Kitchin
157}, >> year = 1998, >> shorttitle = {Discriminating clear sky from clouds with {MODIS}}, >> } > > [...] > > Try removing the comma in the last entry. I've found that having this > comma confuses bibtex and/or emacs at times... > > Just grasping at straws here

Re: [O] Paste from clip/kill ring as cold block?

2015-07-03 Thread John Kitchin
This sounds like wrote: Hi list i use code block alot in my various org mode users. while the C-c C-v d is fast to use i find that alot of my use cases are focused on pasting stuff and then converting that into code blocks. i was wondering if anyone knew or uses his own mini script of a way

Re: [O] Structuring and (cross)linking information in org-mode

2015-07-03 Thread John Kitchin
Andreas > Garzotto’s excellent PIM/PE on it (PE was a text editor that was partially > inspired by Emacs and PIM was quite similar to org-mode, although PIM existed > prior to org-mode): I’d like to do something similar with Emacs / org that > was possible with PIM/PE. :-) > >

Re: [O] Extract document structure from Org file

2015-07-03 Thread John Kitchin
ifferent weights to words appearing in headers and words appearing in > comments). > > Best. > > Oleg -- Professor John Kitchin Doherty Hall A207F Department of Chemical Engineering Carnegie Mellon University Pittsburgh, PA 15213 412-268-7803 @johnkitchin http://kitchingroup.cheme.cmu.edu

Re: [O] Extract document structure from Org file

2015-07-04 Thread John Kitchin
. It is pretty interesting overall! Oleg Sivokon writes: > John Kitchin writes: > >> You would use org-element. Try org-element-parse-buffer and >> org-element-map and maybe org-element-interpret-data. There's also a >> bunch of regexp for identifying/finding

[O] Getting heading properties from org-element

2015-07-05 Thread John Kitchin
, e.g. org-entry-properties, and I am looking for something like this from an element. thanks. -- Professor John Kitchin Doherty Hall A207F Department of Chemical Engineering Carnegie Mellon University Pittsburgh, PA 15213 412-268-7803 @johnkitchin http://kitchingroup.cheme.cmu.edu

Re: [O] Getting heading properties from org-element

2015-07-06 Thread John Kitchin
the parse tree to avoid the excursion (I use this to index a few thousand org-files so I want it to be fast). It turns out that is not too slow, so until a better way comes along, I will use it! Thorsten Jolitz writes: > John Kitchin writes: > > Hi John, > >> Is there a conveni

Re: [O] Getting heading properties from org-element

2015-07-06 Thread John Kitchin
beautiful! Thanks! Nicolas Goaziou writes: > Hello, > > John Kitchin writes: > >> hm. We must have different use cases in mind. Currently I am using >> >> (save-excursion >> (goto-char >>

Re: [O] Structuring and (cross)linking information in org-mode

2015-07-08 Thread John Kitchin
Daniel Hertrich writes: > Dear John, > > also to you, many thanks for your time to answer so many questions of mine. > I’ll comment them below: > > >> Am 03.07.2015 um 16:02 schrieb John Kitchin : >> >> This all sounds doable, but it will take some work ;) >

Re: [O] John's amazing indexing posts

2015-07-13 Thread John Kitchin
arch terms. I'm looking > forward to your next steps, John! > > Matt -- Professor John Kitchin Doherty Hall A207F Department of Chemical Engineering Carnegie Mellon University Pittsburgh, PA 15213 412-268-7803 @johnkitchin http://kitchingroup.cheme.cmu.edu

Re: [O] John's amazing indexing posts

2015-07-27 Thread John Kitchin
27;s searched for the current query. > Unfortunately, the -A (abstract) switch isn't as useful as the context > that e.g. grep gives, so I went only with the file names. > > regards, > Oleh -- Professor John Kitchin Doherty Hall A207F Department of Chemical Engineering Carnegie Mellon University Pittsburgh, PA 15213 412-268-7803 @johnkitchin http://kitchingroup.cheme.cmu.edu

Re: [O] Questions about exporting: subtitle, level formating, custom highlight markers error

2015-07-28 Thread John Kitchin
the problem, at any rate. > >> except >> that the marker characters are copied verbatim to the output, so you'll >> have some cleanup to do. > That's okay. It's not a problem for draft versions of the document; and > by the time the final document

Re: [O] create a "send plain text/pdf email with current header" function?

2015-08-01 Thread John Kitchin
You probably could use the function here https://github.com/jkitchin/jmax/blob/master/email.el#L51 for the email part after you find the heading you want to send. I think there is some code there to send a pdf too. On August 1, 2015, at 10:49 AM, Xebar Saram wrote: Hi all i find that i keep

Re: [O] Auto insert and change date in header?

2015-08-01 Thread John Kitchin
e a date in the header showing >> > last edited date. >> > Is this technically possible? >> >> Try setting before-save-hook. See "(elisp) Saving Buffers". >> >> -Dave >> >> >> -- Professor John Kitchin Doherty Hall A207F Department of Chemical Engineering Carnegie Mellon University Pittsburgh, PA 15213 412-268-7803 @johnkitchin http://kitchingroup.cheme.cmu.edu

Re: [O] Insert org-id Link at Point via Outline Path Completion

2015-08-01 Thread John Kitchin
t;For reference, I have the following set in my configuration: >>> >>>;; Use global IDs >>>(require 'org-id) >>>(setq org-id-link-to-org-use-id t) >>> >>>;; Update ID file .org-id-locations on startup >>>(org-id-update-id-locations) >>> >>>;; Targets include this file and any file contributing to the agenda - >>>up to 9 levels deep >>>(setq org-refile-targets (quote ((nil :maxlevel . 9) >>> (org-agenda-files :maxlevel . 9 >>>(setq org-refile-use-outline-path 'file) >>>(setq org-outline-path-complete-in-steps t) >>>(setq org-refile-allow-creating-parent-nodes t) >>> >>> >>> >>> >>> -- Professor John Kitchin Doherty Hall A207F Department of Chemical Engineering Carnegie Mellon University Pittsburgh, PA 15213 412-268-7803 @johnkitchin http://kitchingroup.cheme.cmu.edu

Re: [O] Insert org-id Link at Point via Outline Path Completion

2015-08-01 Thread John Kitchin
; potential in future :)) > > thx so much John as always you rock ;-) > > Z > > On Sat, Aug 1, 2015 at 8:36 PM, Xebar Saram wrote: > >> John, this is superb! >> >> thx so much it answers all my needs, what a great find :) >> >> kind regards >&

Re: [O] Insert org-id Link at Point via Outline Path Completion

2015-08-02 Thread John Kitchin
i missing something? > > best > > Z > > On Sat, Aug 1, 2015 at 10:03 PM, John Kitchin > wrote: > >> usually it is pretty easy to add new functions in helm, but it is less >> easy in this case because the source is dynamically generated from a >> function. So

Re: [O] Latex index using makeidx

2015-08-02 Thread John Kitchin
maybe hippie-expand? otherwise, you can write your own code to search the buffer for entries, and use them as the collection for completing-read. John --- Professor John Kitchin Doherty Hall A207F Department of Chemical Engineering Carnegie Mellon University

Re: [O] Auto insert and change date in header?

2015-08-02 Thread John Kitchin
*Messages* which change a lot, especially during startup. John ------- Professor John Kitchin Doherty Hall A207F Department of Chemical Engineering Carnegie Mellon University Pittsburgh, PA 15213 412-268-7803 @johnkitchin http://kitchingroup.cheme.cmu.edu On Sun, Aug

Re: [O] orgmode and R?

2015-08-03 Thread John Kitchin
tly through > maybe babel? If this is possible, do any tutorials exist with some worked > examples? I have R and emacs-R-mode installed so I can access R from > emacs at least. -- Professor John Kitchin Doherty Hall A207F Department of Chemical Engineering Carnegie Mellon University Pitt

Re: [O] orgmode and R?

2015-08-03 Thread John Kitchin
e.org/worg/org-contrib/babel/languages/ob-doc-R.html > > is the first hit on "org-mode R" from google. > > There is extensive art on the topic. > > > - Allen S. Rout -- Professor John Kitchin Doherty Hall A207F Department of Chemical Engineering Ca

Re: [O] Trouble with autofill mode

2015-08-04 Thread John Kitchin
vantages too. It would perhaps be > better for git-like version control of documents written in orgmode. Isn’t it? > > Do others have an experience to share about this? > > Vikas -- Professor John Kitchin Doherty Hall A207F Department of Chemical Engineering Carnegie Mellon University Pittsburgh, PA 15213 412-268-7803 @johnkitchin http://kitchingroup.cheme.cmu.edu

Re: [O] Trouble with autofill mode

2015-08-04 Thread John Kitchin
> This is turning out to be non-trivial for my limited knowledge of regex. We > need a regex that would return true for all white spaces between "\index{" > and “}" in a string like > > \index{this is an index} and then some text \index(and then another index} > &g

Re: [O] create a "send plain text/pdf email with current header" function?

2015-08-05 Thread John Kitchin
ss > C-c C-c. > > This isnt really important so if its complicated please feel free to ignore > ;-) > > best > > Z > > > On Sat, Aug 1, 2015 at 6:24 PM, John Kitchin wrote: > >> You probably could use the function here >> https://github.com/jkitchin

Re: [O] Showing Property in headline; generating table from properties; exporting table to CSV

2015-08-06 Thread John Kitchin
owever, >> I would really like to be able to see the grades when the headline is >> folded, so I can have a quick visual sense of how many papers I've marked, > > I would like something like this as well. The nearest I have found is > to use column view. -- Professor J

Re: [O] Showing Property in headline; generating table from properties; exporting table to CSV

2015-08-06 Thread John Kitchin
nts on Darwin Assignment (Student Two) > :END: > - Organization :: > - Clarity of Thesis :: > - Presentation of Evidence :: > - Grammar and Spelling :: > - Style :: > - Citations :: > - Further Comments :: > - Grade :: > ** TODO Student Three > :PROPERTIES: >

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