Re: [O] babel and long-running computations

You are describing what I see as a need to run processes asynchronously. We use the Torque queue system for this. It takes care of scheduling and running jobs on a cluster. On Thu, Apr 17, 2014 at 6:52 AM, Christoph Groth wrote: > Hi Julian, > > > Generally, org-babel is suited for long running

[O] latex export of \ce question

. The nested {} seems to mess it up. Is there a way to get this to export correctly? thanks, John --- John Kitchin Associate Professor Doherty Hall A207F Department of Chemical Engineering Carnegie Mellon University Pittsburgh, PA 15213 412-268-7803 http

Re: [O] latex export of \ce question

Thanks. I was going crazy looking for the snippet syntax! On Tue, Apr 22, 2014 at 8:32 AM, Rasmus wrote: >#+MACRO: ce @@latex:ce($1)@@ >@@latex:ce{ABO_{3-\delta}}@@ >{{{ce(ABO_{3-\delta})}}} > John --- John Kitchin Associate Professor

Re: [O] To interrupt org-latex-pdf-process to regexp-replace some string of the .tex intermediate file and continue to export

].*\]?\\)?\\)" ;; match optional [stuff] "{\\([^}].*\\)\.\\(png\\)}") "\\1{\\3}" tex-contents) John --- John Kitchin Associate Professor Doherty Hall A207F Department of Chemical Enginee

Re: [O] To interrupt org-latex-pdf-process to regexp-replace some string of the .tex intermediate file and continue to export

line minus the .png. then you need to manually build the latex file if you want the pdf. I am not sure what an ebb file is, or what the difference in latex vs xelatex is. https://github.com/jkitchin/jmax/blob/master/ox-manuscript.el John --- John Kitchin

Re: [O] To interrupt org-latex-pdf-process to regexp-replace some string of the .tex intermediate file and continue to export

build your latex file with extensions removed, bibliography replaced, and open the pdf through the regular org-mode export menu. This may be more helpful than trying to do the steps manually as I described. John --- John Kitchin Associate Professor Doherty Hall A207F

Re: [O] latex export of \ce question

ohn --- John Kitchin Associate Professor Doherty Hall A207F Department of Chemical Engineering Carnegie Mellon University Pittsburgh, PA 15213 412-268-7803 http://kitchingroup.cheme.cmu.edu

Re: [O] State of the art in citations

html or odt I suspect. Anyway, there are some very interesting ideas in this code, and I am using it on a pretty regular basis. Maybe some of you would also find them interesting/helpful. I look forward to see this continue developing! John --- John Kitchin Assoc

[O] org-ref code

functions I find useful. I think it is a standalone package now. I would be grateful if anyone tried it, and let me know if it does not work as advertised ;) John --- John Kitchin Associate Professor Doherty Hall A207F Department of Chemical Engineering Carnegie Mellon

Re: [O] org-ref code

Thanks for the feedback. I moved the key-bindings for f10-12 out of org-ref. On Thu, May 1, 2014 at 6:01 AM, Eric S Fraga wrote: > John, > > I've been playing with the package although, so far, only for > citations. A few points: > > 1. Do you have any support for choosing the type of citation

Re: [O] org-ref code

sorry, premature send! On Thu, May 1, 2014 at 8:36 AM, John Kitchin wrote: > Thanks for the feedback. I moved the key-bindings for f10-12 out of > org-ref. > > > On Thu, May 1, 2014 at 6:01 AM, Eric S Fraga wrote: > >> John, >> >> I've been playing wi

Re: [O] org-ref code

Kitchin Associate Professor Doherty Hall A207F Department of Chemical Engineering Carnegie Mellon University Pittsburgh, PA 15213 412-268-7803 http://kitchingroup.cheme.cmu.edu On Thu, May 1, 2014 at 9:30 AM, Eric S Fraga wrote: > On Thursday, 1 May 2014 at 08:47, John Kitchin wr

Re: [O] First attempt at exporting to PDF.

"pdflatex -shell-escape -interaction nonstopmode -output-directory %o %b" "pdflatex -shell-escape -interaction nonstopmode -output-directory %o %b")) I do not think org-mode runs bibtex by default. After that you should see the references. John ---

Re: [O] Change default latex packages

amsmath" t) ("version=3" "mhchem" t) ("numbers,super,sort&compress" "natbib" t) ("" "natmove" nil) ("" "url" t) ("" "minted" nil) ("" "underscore&

Re: [O] Change default latex packages

Isn't that what it is supposed to be like? what were you expecting differently? John --- John Kitchin Associate Professor Doherty Hall A207F Department of Chemical Engineering Carnegie Mellon University Pittsburgh, PA 15213 412-268-7803

Re: [O] Change default latex packages

th" t) ("version=3" "mhchem" t) ("numbers,super,sort&compress" "natbib" t) ("" "natmove" nil) ("" "url" t) ("" "minted" nil) ("" "underscore" t) (&qu

Re: [O] org-ref code

sively for writing papers, so I anticipate by this fall it will be pretty stable. John --- John Kitchin Associate Professor Doherty Hall A207F Department of Chemical Engineering Carnegie Mellon University Pittsburgh, PA 15213 412-268-7803 http://kitchingroup.cheme.cmu

Re: [O] How to tangle?

that is pretty strange. I just tried it and got Tangled 51 code blocks from org-ref.org You can run the command `org-babel-tangle' with C-c C-v t You could also try: [[elisp:(org-babel-load-file "org-ref.org")]] John ------- John Kitchin Associate Pr

Re: [O] org-ref code

On Sat, May 10, 2014 at 10:44 AM, Eric S Fraga wrote: > On Thursday, 1 May 2014 at 13:07, John Kitchin wrote: > > I implemented some of this partially. I made it so you can specify the > > default cite link in a user variable, with a default of cite. When you > type > >

Re: [O] org-ref code

that should work out of the box, and that link is defined in org-ref as (org-add-link-type "cite" 'org-ref-cite-onclick-minibuffer-menu 'org-ref-cite-link-format) I am not sure why it would not work out of the box. John ------- John Kitchin

Re: [O] org-ref code

y mostly written as \citation{label}? John ------- John Kitchin Associate Professor Doherty Hall A207F Department of Chemical Engineering Carnegie Mellon University Pittsburgh, PA 15213 412-268-7803 http://kitchingroup.cheme.cmu.edu On Mon, May 12, 2014 at 4:12 A

Re: [O] org-ref code

machinery to insert citations. I made a little screencast here: http://screencast.com/t/bxfafVydE j John --- John Kitchin Associate Professor Doherty Hall A207F Department of Chemical Engineering Carnegie Mellon University Pittsburgh, PA 15213 412-268-7803 http

Re: [O] org-ref code

ry to reproduce this tomorrow. John ------- John Kitchin Associate Professor Doherty Hall A207F Department of Chemical Engineering Carnegie Mellon University Pittsburgh, PA 15213 412-268-7803 http://kitchingroup.cheme.cmu.edu On Tue, May 13, 2014 at 4:11 PM, Eric S F

Re: [O] org-ref code

ou do not need to do the manual additions unless you manually define the link like you did with org-add-link-type. John ------- John Kitchin Associate Professor Doherty Hall A207F Department of Chemical Engineering Carnegie Mellon University Pittsburgh, PA 152

Re: [O] org-ref code

I think you are restricted to single characters. That key is used by reftex, so it would be a limitation in reftex. You can always define your own function with a key-binding for something specific. John --- John Kitchin Associate Professor Doherty Hall A207F

Re: [O] org-ref code

setup all the time, but it might help figure out what is different with your setup. For Macs or Linux, you just need to run something like "emacs -q -l path/to/jmax/init.el" to try it out. John --- John Kitchin Associate Professor Doherty Hall A207F Dep

Re: [O] org-ref code

--- John Kitchin Associate Professor Doherty Hall A207F Department of Chemical Engineering Carnegie Mellon University Pittsburgh, PA 15213 412-268-7803 http://kitchingroup.cheme.cmu.edu On Wed, May 14, 2014 at 2:17 PM, Eric S Fraga wrote: > On Tuesday, 13 May 2014 at 20:28, John Kitchin wr

Re: [O] org-ref code

works like I expect. Your error seems to be coming from reftex. I wonder if you have something set that is making it look for a TeX-master or something, which eventually results in nil, which is failing here: re-search-forward(nil 10001 t). Or maybe you need to set something to turn that off. P

Re: [O] org-ref code

us the best of both worlds (org and latex) I don't think I have done anything to make the naked links work. John ------- John Kitchin Associate Professor Doherty Hall A207F Department of Chemical Engineering Carnegie Mellon University Pittsburgh, P

Re: [O] org-ref code

yes, I am using emacs 24.3. John --- John Kitchin Associate Professor Doherty Hall A207F Department of Chemical Engineering Carnegie Mellon University Pittsburgh, PA 15213 412-268-7803 http://kitchingroup.cheme.cmu.edu On Thu, May 15, 2014 at 9:30 AM, Eric S

Re: [O] org-ref for biblatex

if it does what you need? John --- John Kitchin Associate Professor Doherty Hall A207F Department of Chemical Engineering Carnegie Mellon University Pittsburgh, PA 15213 412-268-7803 http://kitchingroup.cheme.cmu.edu On Sun, May 18, 2014 at 1:16 PM, Andreas

Re: [O] org-ref for biblatex

good news, I think org-ref works with biblatex pretty well now, see http://kitchingroup.cheme.cmu.edu/blog/2014/05/19/Exporting-citations-with-biblatex/ org-ref also makes a reasonable html bibliography now too! John --- John Kitchin Associate Professor Doherty

Re: [O] Org mode links for helm

o put your links in. I think you could do something like that with #+name. John --- John Kitchin Associate Professor Doherty Hall A207F Department of Chemical Engineering Carnegie Mellon University Pittsburgh, PA 15213 412-268-7803 http://kitchingroup.cheme.cm

Re: [O] latex markup in org?

, and type C-c C-c. that should do what you want. John --- John Kitchin Associate Professor Doherty Hall A207F Department of Chemical Engineering Carnegie Mellon University Pittsburgh, PA 15213 412-268-7803 http://kitchingroup.cheme.cmu.edu On Sun, Jun 1, 2014 at

Re: [O] Writing .el files for org in org?

to-tangling, committing, etc... just regular version control on the source of the source. John --- John Kitchin Associate Professor Doherty Hall A207F Department of Chemical Engineering Carnegie Mellon University Pittsburgh, PA 15213 412-268-7803 http://kitchingroup.ch

Re: [O] Managing bibtex database using org-mode?

-entry-from-doi RET some-doi and you will get a new cleaned bibtex entry at your cursor, the pdf will be downloaded and saved as bibtex-key.pdf, and an entry in a notes.org file. feedback would be welcomed! John --- John Kitchin Associate Professor Doherty Hall

Re: [O] copying files in the links while exporting to html

://kitchingroup.cheme.cmu.edu. I wrote about doing some of this here: http://kitchingroup.cheme.cmu.edu/blog/2013/09/28/Changing-links-to-files-so-they-work-in-a-blog/ It may not be what you want, but it might help you build your code. I hope it helps! John --- John Kitchin

[O] org-contacts email completion by tags

of org-contacts? That search works fine with C-c am. Thanks, John --- John Kitchin Associate Professor Doherty Hall A207F Department of Chemical Engineering Carnegie Mellon University Pittsburgh, PA 15213 412-268-7803 http://kitchingroup.cheme.cmu.edu

Re: [O] org-contacts email completion by tags

contacts database to get this with completion. I will look into this later today. Thanks for the ideas. John --- John Kitchin Associate Professor Doherty Hall A207F Department of Chemical Engineering Carnegie Mellon University Pittsburgh, PA 15213 412-268-7803 htt

Re: [O] org-contacts email completion by tags

pression collect (org-contacts-format-email contact-name email)) ","))) John --- John Kitchin Associate Professor Doherty Hall A207F Department of Chemical Engineering Carnegie Mellon University Pittsburgh, PA 15213 412-268-7803 http://kitchingroup.cheme.cmu.edu

Re: [O] org-contacts email completion by tags

d "\\(\\`\\|[\n:,]\\)[ \t]*") (goto-char (match-end 0)) (point (string (buffer-substring start end))) (or ;; I added the next line (org-contacts-complete-tags start end string) (org-contacts-com

[O] set TO as a property on a heading

TO. In file completion it is something like C-f, is there something similar for this scenario? Thanks, -- --- John Kitchin

Re: [O] set TO as a property on a heading

ollowed by your desired value. > > Aaron > -- --- John Kitchin Professor Doherty Hall A207F Department of Chemical Engineering Carnegie Mellon University Pittsburgh, PA 15213 412-268-7803 http://kitchingroup.cheme.cmu.edu

Re: [O] set TO as a property on a heading

Yes! That (C-j) is exactly what does it. and it is ido enabled. Thanks, it was driving me crazy! Rasmus writes: > John Kitchin writes: > >> I feel a little silly asking this, but I cannot figure out how to do >> it. I want to create a property called TO. >> >>

Re: [O] links-9.0 v3

d-function (funcall dedicated-function (concat path @@ -10802,8 +10891,8 @@ link in a property drawer line." (list (string-to-number option))) (t (list nil

[O] negating a filetag on an entry?

If I use a line like: #+FILETAGS: f16-06625 and I want a headline in the file to not have that tag, is that possible? -- Professor John Kitchin Doherty Hall A207F Department of Chemical Engineering Carnegie Mellon University Pittsburgh, PA 15213 412-268-7803 @johnkitchin http

Re: [O] negating a filetag on an entry?

rchive the headline to another file or delete the headline. Juan Pechiar writes: > On Fri, Jul 15, 2016 at 08:20:58AM -0400, John Kitchin wrote: >> If I use a line like: >> >> #+FILETAGS: f16-06625 >> >> and I want a headline in the file to not have that tag, is that

Re: [O] Importing ODT/libreoffice into Org

done after a > document has been turned into plain text, but not headings and emphasis > markup... > > Thanks, > Eric > > > -- John --- Professor John Kitchin Doherty Hall A207F Department of Chemical Engineering Carnegie Mellon

Re: [O] Importing ODT/libreoffice into Org

It is formatted from org to applications. That may not be the direction you were going. On Saturday, July 16, 2016, Eric Abrahamsen wrote: > John Kitchin > writes: > > > Check out ox-clip. It does formatted copy and paste. It is on Melpa. > > Oh cool -- thanks for the

Re: [O] links-9.0 v3

Nicolas Goaziou writes: > Hello, > > John Kitchin writes: > >> Here are my current suggestions for the org-link 9.0. > > Thank you. I think I fixed the points you made in the previous email. > >> Let me know what the best way to send these might be. It loo

Re: [O] links-9.0 v3

Nicolas Goaziou writes: > John Kitchin writes: > >> I am not sure what you mean for this. Let me know if it isn't fixed in >> the attached patches. I thought I had squashed everything into a concise >> history. > > No worries. Let's just apply the 21

Re: [O] links-9.0 v3

Sounds good. Thanks for your patience, I learned a lot doing this! I look forward to using it in the wild ;) Nicolas Goaziou writes: > John Kitchin writes: > >> Ok. I have attached 20 patches with the updates below. > > Applied, with minor tweaks (trailing white spaces

[O] proposed modification of org-display-inline-images

300, preserving aspect ratio #+attr_org: :resize 300 set height to 200, and preserve aspect ratio #+attr_org: :resize x200 set size to 200x300 and change aspect ratio #+attr_org: :resize 200x300! Any thoughts on this proposal? -- Professor John Kitchin Doherty Hall A207F Department of Chemi

Re: [O] proposed modification of org-display-inline-images

Rasmus writes: > Hi, > > Thanks for the proposal. > > John Kitchin writes: > >> I would like to propose a change to org-display-inline-images so it can >> rescale images even if imagemagick is not built in to emacs. There is >> currently no way to rescale im

Re: [O] error while upgrading to 8.3.5

pply #'encode-time (org-parse-time-string "<2014-03-04 Tue>")) >> >> Evaluating these in emacs does not seem to do anything. No message. > > The return value is displayed in the minibuffer. Use C-x C-e right after > the closing parens of each form. > > Also, did you set some weird variable like `org-extend-today-until'? > > Regards, -- Professor John Kitchin Doherty Hall A207F Department of Chemical Engineering Carnegie Mellon University Pittsburgh, PA 15213 412-268-7803 @johnkitchin http://kitchingroup.cheme.cmu.edu

Re: [O] make some tangled dotfiles file executable during babel tangling?

/guides/dotfile-management > > one thing im missing is how to make some of these tangled sh files > executable after i tangle them (like running chmod +x). > > any ideas? > > best > > Z > > > -- John --- Professor John Kitchin Do

Re: [O] Documentclass for latex preview images

X_HEADER: \newtheorem{defn}{Definition}[chapter] > #+LATEX_HEADER: \newtheorem{prop}{Proposition}[chapter] > #+LATEX_HEADER: }{} > > > Is there a downside to using the same document class as the org file > specifies for export to create the preview images? > > Thanks, > Maik

Re: [O] Error with inline image resizing

.11.6(15G31). > > *** $ convert --version > > Version: ImageMagick 6.9.5-1 Q16 x86_64 2016-07-15 > http://www.imagemagick.org > > Copyright: Copyright (C) 1999-2016 ImageMagick Studio LLC > > License: http://www.imagemagick.org/script/license.php > > Features: Cipher DPC Modu

Re: [O] Scaling of image previews in org-mode

ng? > > (Org-mode version 8.3.4 (8.3.4-99-ga8e4a3-elpa @ > /Users/johannes/Library/Preferences/Aquamacs > Emacs/Packages/elpa/org-20160704/) > > Johannes -- Professor John Kitchin Doherty Hall A207F Department of Chemical Engineering Carnegie Mellon University Pittsburgh, PA 15213 412-268-7803 @johnkitchin http://kitchingroup.cheme.cmu.edu

Re: [O] [PATCH] Re: links-9.0 v3

rib files that use > org-store-link-functions and org-add-link-type. > > I'm not familiar enough with the details of org-link-set-parameters to > fix all of the contrib files, but I am including a simple patch to > update a contrib file that I use regularly: org-eww.el. > >

Re: [O] Scaling of image previews in org-mode

://kitchingroup.cheme.cmu.edu/blog/2016/03/21/Displaying-image-overlays-on-image-filenames-in-Emacs/ That example had imagemagick compiled in, but it could be adapted pretty readily to use an external imagemagick.. Uwe Brauer writes: >>>> "John" == John Kitchin writes: > &g

Re: [O] function to duplicate current header and change ID

s? > > best > > Z > > > On Wed, Aug 3, 2016 at 7:17 AM, Xebar Saram wrote: > >> 1. copy current header and contents (org-copy-subtree) at point >> 2. auto paste it below current header >> 3. change ID >> -- Professor John Kitchin Doherty Hall A207F Department of Chemical Engineering Carnegie Mellon University Pittsburgh, PA 15213 412-268-7803 @johnkitchin http://kitchingroup.cheme.cmu.edu

Re: [O] org-ref bibliography html export & bigblow

Is the bibliography actually in the html but not displayed in a browser? It is hard to see how a theme would change the link export, although via few it might change what is visible. On Saturday, August 13, 2016, Johannes Brauer wrote: > Hi, > > using org-ref by John Kitchin bibliogr

Re: [O] org-ref bibliography html export & bigblow

t; > the bibliography is in the html but not displayed > > Johannes > > Am 14.08.2016 um 18:43 schrieb John Kitchin >: > > Is the bibliography actually in the html but not displayed in a browser? > > It is hard to see how a theme would change the link export, althou

Re: [O] Cross-referencing

Does this do what you want? [[*Is it confidential?][confidential]] Sharon Kimble writes: > How can I have a cross-reference for a specific word please? I want to > reference 'confidentiality' to a section headed "Is it confidential?" > > Thanks > Sharon.

Re: [O] back matter in Org documents.

+INCLUDE each email I care about, and > do an internal link? That's not awful, but it's not nearly as > high-speed and sexy. > > > - Allen S. Rout -- Professor John Kitchin Doherty Hall A207F Department of Chemical Engineering Carnegie Mellon University Pittsburgh, PA 15213 412-268-7803 @johnkitchin http://kitchingroup.cheme.cmu.edu

Re: [O] new link parameters and link abbreviations

that isn't a feature I have used too often. Could you post a small example that illustrates the problem? Thanks, John --- Professor John Kitchin Doherty Hall A207F Department of Chemical Engineering Carnegie Mellon University Pittsburgh, PA 15213 412-268

Re: [O] org-link-set-parameters missing in ELPA version

that seems weird, I thought that should only be in org 9. Is that on ELPA somehow? John --- Professor John Kitchin Doherty Hall A207F Department of Chemical Engineering Carnegie Mellon University Pittsburgh, PA 15213 412-268-7803 @johnkitchin http

Re: [O] Emacs+org on Windows 7 pro

(0xFFFCF67D), Emacs 25.0.94.1, Org > release_8.3.5-1070-g190476 > > -- John --- Professor John Kitchin Doherty Hall A207F Department of Chemical Engineering Carnegie Mellon University Pittsburgh, PA 15213 412-268-7803 @johnkitchin http://kitchingroup.cheme.cmu.edu

Re: [O] new link parameters and link abbreviations

abbreviation of the above link: > > #+begin_src emacs-lisp > (setq org-link-abbrev-alist '(("nl" . "new-link::%s"))) > #+end_src > > > 4. the 'tooltip' does not work but shows the default: > > [[nl:awesome]] > > > Hope that

Re: [O] Emacs+org on Windows 7 pro

nd did the following: >> >> https://github.com/grettke/help/blob/master/help.md#windows > > Thanks. I'll check this out. > > If I ever have to use a Windows system at all, I want bash & emacs and > cygwin makes it very easy (for me). -- Professor John Kitch

Re: [O] Emacs+org on Windows 7 pro

Axel Kielhorn writes: >> Am 23.08.2016 um 00:13 schrieb John Kitchin : >> >> Checkout http://github.com/jkitchin/scimax. With git installed it will >> install an opinionatedly configured Emacs. Most of my students use it. I >> would just have each user install

Re: [O] Emacs+org on Windows 7 pro

n/scimax/master/install-scimax-win.sh )" and it will download everything for you. On completion, there is some helm, and some ivy. You can configure it as you see fit. There are some things I like about each one. John --- Professor John Kitchin Doherty Hall A20

Re: [O] org-link-set-parameters missing in ELPA version

I haven't been able to reproduce this in org-plus-contrib-20160822. Rob Duncan writes: > Hi John, > > My org is claiming to be version 8.3.5: > > Org-mode version 8.3.5 (8.3.5-elpa @ > /Users/rduncan/.emacs.d/elpa/org-20160815/) > > Rob. > > On Aug

Re: [O] Emacs movement keys

; Best, -- Professor John Kitchin Doherty Hall A207F Department of Chemical Engineering Carnegie Mellon University Pittsburgh, PA 15213 412-268-7803 @johnkitchin http://kitchingroup.cheme.cmu.edu

Re: [O] export to ics a specific buffer every X hours

calendar-export-to-ics) "/home/zeltak/org/files/export/kcal.ics") (message "exported to ics"))) John ------- Professor John Kitchin Doherty Hall A207F Department of Chemical Engineering Carnegie Mellon University Pittsburgh, PA 15213 412-268-7803 @john

Re: [O] Proposal and RFC for improving ob-python

> level remains high enough, i might try to see if i can do anything. > cheers, Greg Minshall -- Professor John Kitchin Doherty Hall A207F Department of Chemical Engineering Carnegie Mellon University Pittsburgh, PA 15213 412-268-7803 @johnkitchin http://kitchingroup.cheme.cmu.edu

Re: [O] Accessing the communication channel from a link exporter

is path is defined in one of > the properties in org-publish-project-alist, and I need the info > communication channel to access it. -- Professor John Kitchin Doherty Hall A207F Department of Chemical Engineering Carnegie Mellon University Pittsburgh, PA 15213 412-268-7803 @johnkitchin http://kitchingroup.cheme.cmu.edu

Re: [O] Accessing the communication channel from a link exporter

HTML > is structured data, and it would have been good if it was available in > some kind of S-form tree structure. It would have saved me the trouble > of parsing the HTML, and I could have used a library like xmlgen to > generate it. > > Regards, > Arun Isaac -- Professor John Kitchin Doherty Hall A207F Department of Chemical Engineering Carnegie Mellon University Pittsburgh, PA 15213 412-268-7803 @johnkitchin http://kitchingroup.cheme.cmu.edu

Re: [O] There is no line to end here at LaTeX org-ref export

t; Ok, after some debugging and bisecting my .emacs, org-export-preserve-breaks > t seems to cause the faulty export. > > Best, > Florian -- Professor John Kitchin Doherty Hall A207F Department of Chemical Engineering Carnegie Mellon University Pittsburgh, PA 15213 412-268-7803 @johnkitchin http://kitchingroup.cheme.cmu.edu

Re: [O] Modules, libraries, eggs, etc.

essor John Kitchin Doherty Hall A207F Department of Chemical Engineering Carnegie Mellon University Pittsburgh, PA 15213 412-268-7803 @johnkitchin http://kitchingroup.cheme.cmu.edu On Tue, Sep 6, 2016 at 3:17 PM, Lawrence Bottorff wrote: > Racket has a nice module system whereby a module is k

Re: [O] Programmatically handling org files

his link (for example by looking at the major mode). If not, it must exit and return nil. If yes, it should return a non-nil value after a calling `org-store-link-props' with a list of properties and values. > > TIA -- Professor John Kitchin Doherty Hall A207F Department of Ch

Re: [O] Programmatically handling org files

--- Professor John Kitchin Doherty Hall A207F Department of Chemical Engineering Carnegie Mellon University Pittsburgh, PA 15213 412-268-7803 @johnkitchin http://kitchingroup.cheme.cmu.edu On Mon, Sep 12, 2016 at 2:21 PM, Thorsten Jolitz wrote: > Joost Kremers writes: > > Hi, > > >

Re: [O] org-ref: renaming/moving an entire pdf library according to a bibtex file

as doi-centric, so the pdf route is not as well developed yet. It is probably possible, but it would take some care to get it right for when no doi is found, when one doi is found, and when multiple dois are found. > > Thanks for helping, > Martin -- Professor John Kitchin Doherty Hall A207

[O] Name of code pieces when exported to PDF

that #+CAPTION is deprecated and #+NAME is > to be used in its place going forward. If that's the case, then the > listings problem needs fixing. If not, can somebody summarize the > actual situation? > > Thanks! > -- > Nick > > > -- John --- Professor John Kitchin Doherty Hall A207F Department of Chemical Engineering Carnegie Mellon University Pittsburgh, PA 15213 412-268-7803 @johnkitchin http://kitchingroup.cheme.cmu.edu

Re: [O] Fwd: comment lines inside org tables

Use a footnote? It's just a temporary reminder right? On September 27, 2016, at 6:56 AM, "Rolf Sander (MPI)" wrote: Hello, I need to put comments inside a very big table which then should basically looks like this: |+---+| | animal | size | number | |+---+

[O] bug with special entities and (setq org-catch-invisible-edits t)?

also works fine for F_A. This is with: Org-mode version 8.3.5 (8.3.5-1-g589e96-elpaplus @ /Users/jkitchin/vc/jkitchin-github/scimax/elpa/org-plus-contrib-20160822/) Is that a bug, or expected? Thanks, -- Professor John Kitchin Doherty Hall A207F Department of Chemical Engineering Carnegie

Re: [O] bug with special entities and (setq org-catch-invisible-edits t)?

yping. Minified would be ok by me. > > > Regards, -- Professor John Kitchin Doherty Hall A207F Department of Chemical Engineering Carnegie Mellon University Pittsburgh, PA 15213 412-268-7803 @johnkitchin http://kitchingroup.cheme.cmu.edu

Re: [O] Failure to display more than 18 images with captions

t visible, > covering the right side border of the PDF file. > > I would really need help to get it working, as I use Org Mode for > reporting. > > Thank you, > J. Louis -- Professor John Kitchin Doherty Hall A207F Department of Chemical Engineering Carnegie Mellon University Pittsburgh, PA 15213 412-268-7803 @johnkitchin http://kitchingroup.cheme.cmu.edu

Re: [O] Failure to display more than 18 images with captions

n the Org side? > > Regards, > > -- > Nicolas Goaziou > -- John ------- Professor John Kitchin Doherty Hall A207F Department of Chemical Engineering Carnegie Mellon University Pittsburgh, PA 15213 412-268-7803 @johnkitchin http://kitchingroup.cheme.cmu.edu

Re: [O] Failure to display more than 18 images with captions

morefloats" package: >> ctan.org/pkg/morefloats >> >> or \extrafloats{100} >> >> But I did not get that working, I have simply turned off floats. >> >> Jean >> >> On Sat, Oct 01, 2016 at 07:53:59PM +0200, Nicolas Goaziou wrote: >> > He

Re: [O] Is it generally better practice to specify local variables at the first line for Org files?

I usually just put a headline at the end, titled "end" or "local variables", etc.., and tagged noexport, John --- Professor John Kitchin Doherty Hall A207F Department of Chemical Engineering Carnegie Mellon University Pittsburgh, P

Re: [O] Best diagram, image software?

l-exp process latex at line 6... > executing Latex code block... > org-latex-compile: PDF file > c:/Users/pdavis/AppData/Local/Temp/orgtex5448hGP.pdf wasn’t produced > > I've got ImageMagick installed. I don't know how to debug this. -- Professor John Kitchin Doherty Hall A207F Department of Chemical Engineering Carnegie Mellon University Pittsburgh, PA 15213 412-268-7803 @johnkitchin http://kitchingroup.cheme.cmu.edu

Re: [O] Best diagram, image software?

(setq org-latex-create-formula-image-program 'imagemagick) #+END_SRC Peter Davis writes: > On Thu, Oct 6, 2016, at 01:59 PM, John Kitchin wrote: >> I tried this, and it worked for me. Check *Messages* for things like: >> Failed to create dvi file from >> /var/folders/5q/lll

Re: [O] Best diagram, image software?

> Now to figure out how to generate other formats, to work with HTML and > LaTeX/PDF output. > > Thanks, all!! > > -pd -- Professor John Kitchin Doherty Hall A207F Department of Chemical Engineering Carnegie Mellon University Pittsburgh, PA 15213 412-268-7803 @johnkitchin http://kitchingroup.cheme.cmu.edu

Re: [O] Problem with python session

o have different behavior with and without the >> ":session" argument. > > Thank you for the analysis. Would you have a suggestion on how to > improve the situation? > > Regards, -- Professor John Kitchin Doherty Hall A207F Department of Chemical Engineering Carnegie Mellon University Pittsburgh, PA 15213 412-268-7803 @johnkitchin http://kitchingroup.cheme.cmu.edu

Re: [O] Document of org-map-entries

find >>> > much useful information. Can somebody please shed some lights on >>> > this? >>> > >>> >>> See >>> >>>(info "(org) Using the mapping API") >>> >>> and >>> >>>(info "(org) Matching tags and properties") >>> >>> -- >>> Nick >>> >>> >>> >> -- Professor John Kitchin Doherty Hall A207F Department of Chemical Engineering Carnegie Mellon University Pittsburgh, PA 15213 412-268-7803 @johnkitchin http://kitchingroup.cheme.cmu.edu

Re: [O] org-link interface

I do not know if you can do that. I would do something like this. (defun insert-foo-link (path) (interactive "sfoo path: ") (insert (format "[[foo:%s][%s]]" path path))) Daniele Nicolodi writes: > On 10/13/16 8:14 AM, John Kitchin wrote: >> In org8, this is

Re: [O] replying to emai with org-mode syntax in mu4e

And I found this on github: > > https://github.com/djcb/mu/issues/392 -- Professor John Kitchin Doherty Hall A207F Department of Chemical Engineering Carnegie Mellon University Pittsburgh, PA 15213 412-268-7803 @johnkitchin http://kitchingroup.cheme.cmu.edu

Re: [O] html-email in org-mode

italicize-table (data backend info) (with-temp-buffer (insert data) (goto-char (point-min)) (while (re-search-forward " John Kitchin writes: > >> 1.1.3 Tables >> >> Table 1: A table for you. >> x y >> 1 2 >> > > Hi Joh

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