Re: [O] Personal notes in org/beamer presentation

2015-09-14 Thread Giacomo M
Thanks a lot for the C-c C-b tip! One more question: is there a way to setup two pdf export profiles, one for the pdf w/ notes and one for that w/o notes? On Sep 13, 2015 12:13 PM, "Rasmus" <ras...@gmx.us> wrote: > Giacomo M <jackja...@gmail.com> writes: > > >

Re: [O] Personal notes in org/beamer presentation

2015-09-13 Thread Giacomo M
but I'm surely using it wrongly. Thanks a lot, Giacomo On Sun, Sep 13, 2015 at 12:23 PM, Rasmus <ras...@gmx.us> wrote: > Hi, > > Giacomo M <jackja...@gmail.com> writes: > > > where would you write personal (not to be exported) notes in an > > org/beamer presentation?

[O] Personal notes in org/beamer presentation

2015-09-13 Thread Giacomo M
Hi all, where would you write personal (not to be exported) notes in an org/beamer presentation? In a :noexport: subtree? How would you conveniently review them? Thanks, Giacomo

Re: [O] two sets of default header arguments for one language

2015-09-11 Thread Rainer M Krug
Nicolas Goaziou <m...@nicolasgoaziou.fr> writes: > Hello, > > Rainer M Krug <r.m.k...@gmail.com> writes: > >> Do macros work for properties ? If yes, you could degine two macro, >> one for each set of properties. > > No, they don't. That's a pity. It

[O] Not opening agenda files when clocking in

2015-09-11 Thread Julian M. Burgos
Dear list, When clocking in at some particular task, org-mode opens all my agenda files (I assume to check if there are dangling clocks). I have many agenda files, and I rather avoid opening tons of new buffers. Is there any way to make org-mode not check for dangling clocks in other agenda

[O] [BUG] outshine and emacs 25.0.5.1 - Was: [error] orgmode git on emacs 25 - HEAD - org-global-cycle

2015-09-10 Thread Rainer M Krug
Kyle Meyer <k...@kyleam.com> writes: > Hi, > > Rainer M Krug <rai...@krugs.de> writes: > >> Hi >> >> when doing global cycling using org in emacs 25.0.50.1, I get an "Before >> first heading" error (see backtrace below). >> >&g

[O] Bug in tangling with hyperlink at beginning of line

2015-09-10 Thread Rainer M Krug
08-28 on Rainers-MacBook-Pro.local | Org-mode version 8.3.1 (release_8.3.1-225-g66a211 @ /Users/rainerkrug/.emacs.d/org-mode/lisp/) ` Cheers, Rainer -- Rainer M. Krug, PhD (Conservation Ecology, SUN), MSc (Conservation Biology, UCT), Dipl. Phys. (Germany) Centre of Excellence for Invas

Re: [O] Bug in tangling with hyperlink at beginning of line

2015-09-10 Thread Rainer M Krug
Nicolas Goaziou <m...@nicolasgoaziou.fr> writes: > Hello, > > Rainer M Krug <rai...@krugs.de> writes: > >> Tangling of >> >> #+PROPERTY: header-args+ :comments both >> >> * Improved leaves >> :PROPERTIES: >> :header-args+: :ta

[O] Closing buffers after clock-in

2015-09-10 Thread Julian M. Burgos
Dear list, When clocking in at some particular task, org-mode opens all my agenda files (I assume to check if there are dangling clocks). I have many agenda files, and I rather avoid opening tons of new buffers. Is there any way to make org-mode not check for dangling clocks in other agenda

Re: [O] [BUG] outshine and emacs 25.0.5.1 - Was: [error] orgmode git on emacs 25 - HEAD - org-global-cycle

2015-09-10 Thread Rainer M Krug
Andreas Leha <andreas.l...@med.uni-goettingen.de> writes: > Hi Rainer, > > Rainer M Krug <rai...@krugs.de> writes: >> Kyle Meyer <k...@kyleam.com> writes: >> >>> Hi, >>> >>> Rainer M Krug <rai...@krugs.de> writes: >>>

Re: [O] [BUG] outshine and emacs 25.0.5.1 - Was: [error] orgmode git on emacs 25 - HEAD - org-global-cycle

2015-09-10 Thread Rainer M Krug
Envoyé de mon iPhone > Le 10 sept. 2015 à 21:28, Kaushal Modi <kaushal.m...@gmail.com> a écrit : > > The author just merged my PR. So it should be in Melpa shortly, in its next > build cycle. > Thanks - perfect. Rainer >> On Sep 10, 2015 6:50 AM, "Rainer

Re: [O] two sets of default header arguments for one language

2015-09-10 Thread Rainer M Krug
Envoyé de mon iPhone > Le 10 sept. 2015 à 15:54, Alan Schmitt a > écrit : > > Hello, > > I’m writing some lab exercises where I have a fairly long list of header > arguments for each source block. I know I can use language-specific > default arguments, but I

[O] [error] orgmode git on emacs 25 - HEAD - org-global-cycle

2015-09-09 Thread Rainer M Krug
)) | org-global-cycle(nil) | funcall-interactively(org-global-cycle nil) | call-interactively(org-global-cycle) | org-shifttab(nil) | funcall-interactively(org-shifttab nil) | call-interactively(org-shifttab nil nil) | command-execute(org-shifttab) ` -- Rainer M. Krug, PhD (Conse

Re: [O] ob-R ignores ess-eval-visibly?

2015-09-09 Thread Rainer M Krug
Envoyé de mon iPhone > Le 4 sept. 2015 à 09:22, Tamas Papp a écrit : > > Hi, > > I prefer ESS not to wait for results of evaluating R code, especially if > it takes a longer time (eg estimating a model in RStan, 1-2 minutes), so > I have > > (setq ess-eval-visibly 'nowait)

Re: [O] Tangling from indirect buffer

2015-09-07 Thread Rainer M Krug
Kyle Meyer <k...@kyleam.com> writes: > Rainer M Krug <rai...@krugs.de> writes: > >> Hi >> >> it seems that tangling from an indirect buffer does not work. Is this by >> design or a bug? > > I don't think that's by design. > >> Would it be

Re: [O] Question about todo subheadings and logbook

2015-09-05 Thread Keith M Swartz
A ha! YES -- that's my confusion! I wrote C-RET, but I was actually typing M-RET. I'm not sure when I developed that habit (probably the awkwardness of going C-RET but M-right to indent confused me at some point), but now it all makes sense. Kinda feel silly now, especially since I made it worse

[O] SOLVED: Error when tangling subtree - but works for whole document

2015-09-04 Thread Rainer M Krug
The problem is that tangling in an indirect buffer does not work. I'll post another email concerning this. Thanks, Rainer Rainer M Krug <rai...@krugs.de> writes: > Hi > > I get an error #(wrong-type-argument stringp nil)# when I tangle a > subtree, but tangling the wh

[O] Tangling from indirect buffer

2015-09-04 Thread Rainer M Krug
instead of having to go back to the actual buffer. Thanks, Rainer -- Rainer M. Krug, PhD (Conservation Ecology, SUN), MSc (Conservation Biology, UCT), Dipl. Phys. (Germany) Centre of Excellence for Invasion Biology Stellenbosch University South Africa Tel : +33 - (0)9 53 10 27 44 Cell

Re: [O] Question about todo subheadings and logbook

2015-09-04 Thread Keith M Swartz
on this approach as a solution to my issue? Thanks, Keith On Fri, Sep 4, 2015 at 11:52 AM, Nicolas Goaziou <m...@nicolasgoaziou.fr> wrote: > Hello, > > Keith M Swartz <oneroad...@gmail.com> writes: > > > I often want to add a subheading (sub-task) to this todo item, so

Re: [O] Question about todo subheadings and logbook

2015-09-04 Thread Keith M Swartz
on the same org version?) after step 3: * TODO First item *** PEND Second item :LOGBOOK: - State "PEND" from "TODO" [2015-09-04 Fri 13:26] - State "TODO" from [2015-09-04 Fri 13:26] - State "TODO" from [

Re: [O] Question about todo subheadings and logbook

2015-09-04 Thread Keith M Swartz
M, Nicolas Goaziou <m...@nicolasgoaziou.fr> wrote: > Keith M Swartz <oneroad...@gmail.com> writes: > > > Step-by-step -- after step 1 [note: the logbook is collapsed initially, > but > > I expanded it here to show the contents. Expanding the logbook before >

[O] Question about todo subheadings and logbook

2015-09-04 Thread Keith M Swartz
if: a) this is how it's supposed to work, and b) if there was an easier way to achieve what I want, maybe just some keyboard shortcut I'm missing. Thanks, Keith -- Keith M Swartz oneroad...@gmail.com

[O] activate new org-tree-to-indirect-buffer to rename to name of heading

2015-09-03 Thread Rainer M Krug
te the new indirect buffer first. How can I activate the new indirect buffer, so that I can rename it to the name of the header? Thanks, Rainer -- Rainer M. Krug, PhD (Conservation Ecology, SUN), MSc (Conservation Biology, UCT), Dipl. Phys. (Germany) Centre of Excellence for Invasion Biology St

Re: [O] Very slow execution, tangling and export with noweb and quick-and-dirty

2015-09-01 Thread Rainer M Krug
Rainer M Krug <rai...@krugs.de> writes: > Hi > > I have a rather extensive literate programming document with several > hundred code blocks. In two subtrees, I use :noweb. Each of these has one > noweb block which is located onder the first level header, and used sever

[O] Very slow execution, tangling and export with noweb and quick-and-dirty

2015-09-01 Thread Rainer M Krug
nt-handler 4 0% | + redisplay_internal (C function) 2 0% | + flyspell-post-command-hook2 0% ` -- Rainer M. Krug, PhD (Conservation Ecology, SUN), MSc (Conservation Biology, UCT),

Re: [O] Very slow execution, tangling and export with noweb and quick-and-dirty

2015-09-01 Thread Rainer M Krug
Sebastien Vauban <sva-n...@mygooglest.com> writes: > Rainer M Krug <rai...@krugs.de> writes: >> Rainer M Krug <rai...@krugs.de> writes: >>> I have a rather extensive literate programming document with several >>> hundred code blocks. In two subtrees,

Re: [O] Start Appendix in LaTeX - better way than \appendix?

2015-08-26 Thread Rainer M Krug
Eric S Fraga e.fr...@ucl.ac.uk writes: On Wednesday, 26 Aug 2015 at 11:47, Rainer M Krug wrote: [...] Is there a better / more org way of doing this, or do I have to live with this? I tend to do something like this: #+begin_src org ,* (new page

[O] Code causes complete crash of emacs - sometimes

2015-08-26 Thread Rainer M Krug
) mouse up 4) crash This happened in the terminal and in the GUI, but only under certain circumstances - reproducible on my system. Is it just on my system? I hope that by removing this my crashes are gone and emacs is as stable as before. Thanks, Rainer -- Rainer M. Krug, PhD (Conservation Ecology

[O] Start Appendix in LaTeX - better way than \appendix?

2015-08-26 Thread Rainer M Krug
*Acknowledgements* with the visual separator following. This works, but is kind of strange, as #/appendix# is not actually part of *Acknowledgements*. Is there a better / more org way of doing this, or do I have to live with this? Thanks, Rainer -- Rainer M. Krug, PhD (Conservation Ecology

[O] Emacs crashes after upade of org (maybe unrelated)

2015-08-24 Thread Rainer M Krug
My emacs crashed today several times already on me - never happened before. And if I say crash, I mean crash: emacs gone. Below the info I get from the OS (OS X, Yosemite). It always happened when editing a code block in org. , | GNU Emacs 24.5.1 (x86_64-apple-darwin14.4.0, Carbon Version

[O] SOLVED: Emacs crashes after upade of org (maybe unrelated)

2015-08-24 Thread Rainer M Krug
I re-installed emacs-mac with homebrew from source and it works now. Cheers, Rainer Rainer M Krug rai...@krugs.de writes: My emacs crashed today several times already on me - never happened before. And if I say crash, I mean crash: emacs gone. Below the info I get from the OS (OS X

Re: [O] Local variables in an org file

2015-08-21 Thread Rainer M Krug
with this name, return the variable as string 3) if no variable is defined continue as usual Cheers, Rainer Jarmo -- Rainer M. Krug, PhD (Conservation Ecology, SUN), MSc (Conservation Biology, UCT), Dipl. Phys. (Germany) Centre of Excellence for Invasion Biology Stellenbosch University South

Re: [O] How to make a non-GPL Org-mode exporter?

2015-07-27 Thread Rainer M Krug
-- Rainer M. Krug, PhD (Conservation Ecology, SUN), MSc (Conservation Biology, UCT), Dipl. Phys. (Germany) Centre of Excellence for Invasion Biology Stellenbosch University South Africa Tel : +33 - (0)9 53 10 27 44 Cell: +33 - (0)6 85 62 59 98 Fax : +33 - (0)9 58 10 27 44 Fax (D

Re: [O] How to make a non-GPL Org-mode exporter?

2015-07-27 Thread Rainer M Krug
Andreas Hilboll li...@hilboll.de writes: On 27.07.2015 15:09, Greg Troxel wrote: Rainer M Krug rai...@krugs.de writes: These packages all depend on R itself. So isn't this the same as in emacs / elisp? Isn't an exporter / .el file the same as a package in R, something which enhances

[O] Change color for two words in LaTeX export using cologr package?

2015-07-24 Thread Rainer M Krug
? Thanks, Rainer -- Rainer M. Krug, PhD (Conservation Ecology, SUN), MSc (Conservation Biology, UCT), Dipl. Phys. (Germany) Centre of Excellence for Invasion Biology Stellenbosch University South Africa Tel : +33 - (0)9 53 10 27 44 Cell: +33 - (0)6 85 62 59 98 Fax : +33 - (0

Re: [O] Change color for two words in LaTeX export using cologr package?

2015-07-24 Thread Rainer M Krug
Eric S Fraga e.fr...@ucl.ac.uk writes: On Friday, 24 Jul 2015 at 15:07, Rainer M Krug wrote: Hi In an org document, I want to change the text colour of two words {\color{red} red line } to red in a sentence and the rest should be normal colour. I am missing something, as this changes

Re: [O] long code blocks making Org Mode very slow

2015-07-22 Thread Angus M
When I have the cursor inside of the code block for the code, moving up or done one line or one page takes 2-3 seconds. Grant Rettke -- Thanks for confirming that you also experience the slow-down. I think that the only way to remedy this is to modify the 'org-src-font-lock-fontify-block'

Re: [O] long code blocks making Org Mode very slow

2015-07-21 Thread Angus M
) (x x))) “Life has become immeasurably better since I have been forced to stop taking it seriously.” --Thompson On Wed, Jul 15, 2015 at 7:22 AM, Angus M anguscmelville at gmail.com wrote: I've just discovered that the slow-response is definitely related to font locking. If I type M-x font

Re: [O] long code blocks making Org Mode very slow

2015-07-15 Thread Angus M
I've just discovered that the slow-response is definitely related to font locking. If I type M-x font-lock-mode to toggle it off then the typing lag problem is solved. According to the Emacs documentation: 'In Emacs 21 and later, turning on font-lock-mode automatically activates the new Just

[O] long code blocks making Org Mode very slow

2015-07-14 Thread Angus M
to it's normal speed. Do I just have to accept that long code blocks can't be entered into Org Mode? Any help would be appreciated. I am running Org Mode (version 8.2.10) on Windows 8. Thanks Angus M

Re: [O] long code blocks making Org Mode very slow

2015-07-14 Thread Angus M
Sebastien Vauban sva-news@... writes: Angus M anguscmelville@... writes: I'm trying to run a long Python code block (~4000 lines) in org mode. The code is sandwiched between: #+begin_src python python code block #+end_src It runs fine, but org mode becomes incredibly slow - when

Re: [O] long code blocks making Org Mode very slow

2015-07-14 Thread Angus M
Nick Dokos ndokos at gmail.com writes: Many thanks for your help Nick - see comments below I'm trying to run a long Python code block (~4000 lines) in org mode. The code is sandwiched between: #+begin_src python python code block #+end_src It runs fine, but org mode becomes

Re: [O] Publishing: building navigation menus and lists of files

2015-07-10 Thread Rainer M Krug
Envoyé de mon iPhone Le 10 juil. 2015 à 14:16, Matt Price mopto...@gmail.com a écrit : I am hoping to finally transition some of my websites to static sites published directly from org finally!). one thing I would really like is to automatically build menus and perhaps index files based

[O] Tangle including code used for :results graphic?

2015-07-02 Thread Rainer M Krug
can, outside org, update the graph by just running the tangled script. Is there an option to tangle *including the automatic plotting code* so that the plot is created on the pdf device with the options given? If not, how can I achieve this? Thanks, Rainer -- Rainer M. Krug, PhD (Conservation

Re: [O] Tangling takes long - profiling and calling R

2015-07-02 Thread Rainer M Krug
Nicolas Goaziou m...@nicolasgoaziou.fr writes: Hello, Aaron Ecay aarone...@gmail.com writes: There is also a semantic difference in the two approaches as to whether a remote invocation of a babel block (via e.g. #+call) uses the properties from the block’s document position, or from

Re: [O] Tangling takes long - profiling and calling R

2015-07-02 Thread Rainer M Krug
Envoyé de mon iPhone Le 2 juil. 2015 à 13:51, Nicolas Goaziou m...@nicolasgoaziou.fr a écrit : Hello, Aaron Ecay aarone...@gmail.com writes: There is also a semantic difference in the two approaches as to whether a remote invocation of a babel block (via e.g. #+call) uses

Re: [O] Tangling takes long - profiling and calling R

2015-07-02 Thread Rainer M Krug
Envoyé de mon iPhone Le 2 juil. 2015 à 18:35, Aaron Ecay aarone...@gmail.com a écrit : Hi Rainer, 2015ko uztailak 2an, Rainer M Krug-ek idatzi zuen: What I am missing in the new syntax is the possibility to *change* the value of one header argument or to *remove* one

Re: [O] Tangling takes long - profiling and calling R

2015-07-02 Thread Rainer M Krug
Envoyé de mon iPhone Le 2 juil. 2015 à 20:21, Sebastien Vauban sva-n...@mygooglest.com a écrit : Aaron Ecay aarone...@gmail.com writes: which adds to header-args, what is missing is , | :header-args-: noweb ` which would remove the noweb yes from the header arguments

Re: [O] Org-lint PROPERTIES

2015-06-30 Thread Rainer M Krug
I agree - this would be very useful. This was already raised in Tangling takes long - profiling and calling R. It might even be already included? Cheers, Rainer ? Best regards, Seb -- Rainer M. Krug, PhD (Conservation Ecology, SUN), MSc (Conservation Biology, UCT), Dipl. Phys

Re: [O] Org-Mode and iCloud Reminders

2015-06-26 Thread Rainer M Krug
any success with getting Mac OS X Reminders working with org-mode? I found this blog post from a few years ago: http://msnyder.info/posts/2012/05/icloud-reminders-orgmode/ and was wondering if anyone's had much success with that or some other syncing mechanism. Thanks! -- Rainer M. Krug

Re: [O] org-log-reschedule: inactive time-stamp instead

2015-06-25 Thread M
Karl Voit devnull at Karl-Voit.at writes: Those active time-stamps clutter my daily agenda a bit. Therefore: ,[ what I would like to get ] | :LOGBOOK: | - Rescheduled from [2014-12-17 Mi] on [2014-12-16 Di 17:01] | :END: ` So can someone please add an option for this

Re: [O] org-log-reschedule: inactive time-stamp instead

2015-06-25 Thread M
Von: Nicolas Goaziou m...@nicolasgoaziou.fr Datum: Thu, 25 Jun 2015 14:20:40 +0200 Betreff: Re: org-log-reschedule: inactive time-stamp instead Hello, I wonder if I get something wrong, but in the variable org-log-note-headings I see Heading when rescheduling String

Re: [O] org version numbers in file - WAS: Tangling takes long - profiling and calling R

2015-06-23 Thread Rainer M Krug
Nicolas Goaziou m...@nicolasgoaziou.fr writes: Rainer M Krug rai...@krugs.de writes: Nicolas Goaziou m...@nicolasgoaziou.fr writes: Rainer M Krug rai...@krugs.de writes: Yes - that's true. But who of the longer org users reads the manual of features they use regularly? Ah well. I turned

Re: [O] org version numbers in file - WAS: Tangling takes long - profiling and calling R

2015-06-23 Thread Rainer M Krug
Detlef Steuer detlef.ste...@gmx.de writes: Am Thu, 18 Jun 2015 15:25:57 +0200 schrieb Rainer M Krug rai...@krugs.de: In the spirit of reproducibility, I would at least suggest to introduce a function which inserts an argument #+ORG_FILE_VERSION: TheActualOrgVersionProbablyWithGitHash

Re: [O] org version numbers in file - WAS: Tangling takes long - profiling and calling R

2015-06-23 Thread Rainer M Krug
Detlef Steuer detlef.ste...@gmx.de writes: Am Tue, 23 Jun 2015 10:45:45 +0200 schrieb Rainer M Krug rai...@krugs.de: 2) most importantly, I think this should be added automatically into the org file as #+ORG_FILE_VERSION: so that one can count on it to be there. Well. I want *nothing

Re: [O] Emacs/ESS/org freezes/hangs on big data/ RAM(~256GB) processes when run in org/babel

2015-06-20 Thread Rainer M Krug
Andreas Leha andreas.l...@med.uni-goettingen.de writes: Hi Rainer, Hi Andreas, Rainer M Krug rai...@krugs.de writes: Charles C. Berry ccbe...@ucsd.edu writes: On Wed, 17 Jun 2015, William Denton wrote: On 17 June 2015, Xebar Saram wrote: I do alot of modeling work that involves using

Re: [O] Emacs/ESS/org freezes/hangs on big data/ RAM(~256GB) processes when run in org/babel

2015-06-18 Thread Rainer M Krug
://github.com/chasberry/orgmode-accessories/tree/ravel-lang -- Rainer M. Krug, PhD (Conservation Ecology, SUN), MSc (Conservation Biology, UCT), Dipl. Phys. (Germany) Centre of Excellence for Invasion Biology Stellenbosch University South Africa Tel : +33 - (0)9 53 10 27 44 Cell: +33 - (0

Re: [O] org version numbers in file - WAS: Tangling takes long - profiling and calling R

2015-06-18 Thread Rainer M Krug
Nicolas Goaziou m...@nicolasgoaziou.fr writes: Rainer M Krug rai...@krugs.de writes: Yes - that's true. But who of the longer org users reads the manual of features they use regularly? Ah well. I turned 3 `mapcar' calls into a single one. It should, hopefully improve speed in your case

[O] org version numbers in file - WAS: Tangling takes long - profiling and calling R

2015-06-17 Thread Rainer M Krug
Nicolas Goaziou m...@nicolasgoaziou.fr writes: Rainer M Krug r.m.k...@gmail.com writes: We can check for that in Org Lint and warn the user. That would be a really good idea! Done. Great - thanks. Before deleting it, one should get a warning that a certain feature is deprecated

Re: [O] Tangling takes long - profiling and calling R

2015-06-16 Thread Rainer M Krug
Envoyé de mon iPhone Le 16 juin 2015 à 14:45, Sebastien Vauban sva-n...@mygooglest.com a écrit : Nicolas Goaziou m...@nicolasgoaziou.fr writes: Rainer M Krug rai...@krugs.de writes: I would not remove it as even I have some org files using them - shame on me. To be clear, are we

Re: [O] Tangling takes long - profiling and calling R

2015-06-16 Thread Rainer M Krug
Envoyé de mon iPhone Le 16 juin 2015 à 13:46, Nicolas Goaziou m...@nicolasgoaziou.fr a écrit : Rainer M Krug rai...@krugs.de writes: I would not remove it as even I have some org files using them - shame on me. We can check for that in Org Lint and warn the user. That would

Re: [O] Tangling takes long - profiling and calling R

2015-06-16 Thread Rainer M Krug
Charles C. Berry ccbe...@ucsd.edu writes: On Mon, 15 Jun 2015, Rainer M Krug wrote: Hi I have a relatively large file with about 200 =source blocks (R) to be tangled to get an R package. But the tangling takes about 20 seconds. Profiling the tangling showed that the call to ~mapcar

Re: [O] Tangling takes long - profiling and calling R

2015-06-16 Thread Rainer M Krug
Nicolas Goaziou m...@nicolasgoaziou.fr writes: Hello, Rainer M Krug rai...@krugs.de writes: I have a relatively large file with about 200 =source blocks (R) to be tangled to get an R package. But the tangling takes about 20 seconds. Profiling the tangling showed that the call to ~mapcar

Re: [O] Specifying ATTR_LATEX document wide?

2015-06-16 Thread Rainer M Krug
Nicolas Goaziou m...@nicolasgoaziou.fr writes: Rainer M Krug rai...@krugs.de writes: Thanks for the clarification. Is there a technical or security reason for this? because especially for export, file local variables would make sense to avoid the #+BIND keywords? ISTR there is a technical

Re: [O] Trouble passing variables into shell blocks on windows

2015-06-15 Thread Rainer M Krug
: cannot access .^M^M : No such file or directory As far as I can see, the first ^M stems from org-babel-sh-var-quote-fmt, and the second from org-babel-expand-body:generic, but I haven't been able to figure out a solution. Any suggestions? -- Rainer M. Krug, PhD (Conservation Ecology, SUN

[O] Tangling takes long - profiling and calling R

2015-06-15 Thread Rainer M Krug
) 3 0% | + timer-event-handler 3 0% ` -- Rainer M. Krug, PhD (Conservation Ecology, SUN), MSc (Conservation Biology, UCT), Dipl. Phys. (Germany) Centre of Excellence for Invasion Biology Stellenbosch University South

Re: [O] source block exported with tabs replacing spaces?

2015-06-10 Thread Rainer M Krug
which is formating the code blocks. I would look there if there is an option to disable the replacement of tabs with strings. Cheers, Rainer Thanks, -- Rainer M. Krug, PhD (Conservation Ecology, SUN), MSc (Conservation Biology, UCT), Dipl. Phys. (Germany) Centre of Excellence for Invasion

Re: [O] org-tree-to-indirect-buffer - naming and prefix in define keyboard key

2015-06-10 Thread Rainer M Krug
Alan Schmitt alan.schm...@polytechnique.org writes: On 2015-06-09 10:36, Rainer M Krug rai...@krugs.de writes: While writing this, I discovered the C-u prefix to keep the last opened indirect buffer open. But I still have two question: 1) How can I map the command C-u M-x ~org-tree

[O] How to activate (and rename) new org-tree-to-indirect-buffer buffer?

2015-06-10 Thread Rainer M Krug
Hi Thanks to Alan Schmitt, I managed to bind C-u M-x ~org-tree-to-indirect-buffer~ but I would now like to activate and rename the new buffer. He suggested that ~(rename-buffer (org-get-heading) t)~ would rename the buffer, but it needs to be activated first. My question: how can I activate

Re: [O] How to open Link in Heading in Agenda without mouse click?

2015-06-10 Thread M
Von: Nick Dokos ndo...@gmail.com Datum: Mon, 08 Jun 2015 12:25:37 -0400 An: emacs-orgmode@gnu.org Betreff: Re: [O] How to open Link in Heading in Agenda without mouse click? Martin Beck elwood...@web.de writes: Hi, I'd like to create an agenda view which gives me quick access to

Re: [O] source block exported with tabs replacing spaces?

2015-06-10 Thread Rainer M Krug
Envoyé de mon iPhone Le 10 juin 2015 à 21:48, Alan Schmitt alan.schm...@polytechnique.org a écrit : On 2015-06-10 14:43, Rainer M Krug rai...@krugs.de writes: This might not be org, but minted in LaTex which is formating the code blocks. I would look there if there is an option

Re: [O] Specifying ATTR_LATEX document wide?

2015-06-09 Thread Rainer M Krug
Nicolas Goaziou m...@nicolasgoaziou.fr writes: Rainer M Krug rai...@krugs.de writes: But I assume, I could also set them via file local variables, which I did with `org-export-allow-bind-keywords'. I don't think there's any guarantee that all local file keywords definitions are observed

[O] org-tree-to-indirect-buffer - naming and prefix in define keyboard key

2015-06-09 Thread Rainer M Krug
indirect buffer open. But I still have two question: 1) How can I map the command C-u M-x ~org-tree-to-indirect-buffer~ to a keyboard shortcut? 2) Can I change the naming of the indirect buffer? To prefix the .org buffer name makes sense, but is cluttering my tabbar (yes - I still use it) - so I would

Re: [O] [RFC] Org linting library

2015-06-09 Thread Rainer M Krug
Nicolas Goaziou m...@nicolasgoaziou.fr writes: Rainer M Krug rai...@krugs.de writes: OK - now I get it. The syntax implies that I want to display the image located there as the descriptor. Correct. Would it be possible for org-lint to give a more direct warning that this link

Re: [O] sharing clock time across headlines/files

2015-06-08 Thread M
Von: Seb splu...@gmail.com Organisation: Church of Emacs Datum: Mon, 08 Jun 2015 15:50:27 -0500 An: emacs-orgmode@gnu.org Betreff: [O] sharing clock time across headlines/files Hi, I'm having trouble finding the proper set up to build a clock table that would show me the time spent in

Re: [O] Organizing and taming hectic Academia work (faculty viewpoint)? Tips or a good guides sought after :)

2015-06-08 Thread M
Von: Xebar Saram zelt...@gmail.com Datum: Mon, 8 Jun 2015 19:39:14 +0300 An: org mode emacs-orgmode@gnu.org Betreff: [O] Organizing and taming hectic Academia work (faculty viewpoint)? Tips or a good guides sought after :) Hi all Im a young assistant professor (in humanities and

Re: [O] [RFC] Org linting library

2015-06-08 Thread Rainer M Krug
Nicolas Goaziou m...@nicolasgoaziou.fr writes: Rainer M Krug rai...@krugs.de writes: Here, Org Lint is correct. Link's description is really a link to a file, ./__BOX__/Aerodynamic, followed by a space, and resistances.docx text. But it is in the description part - shouldn't

Re: [O] [RFC] Org linting library

2015-06-06 Thread Rainer M Krug
Nicolas Goaziou m...@nicolasgoaziou.fr writes: Rainer M Krug rai...@krugs.de writes: The link , | [[file:__BOX__/Aerodynamic%20resistances.docx][file:./__BOX__/Aerodynamic resistances.docx]] ` causes the following warnings: , | 9094 low Link to non-existent local

Re: [O] [RFC] Org linting library

2015-06-05 Thread Rainer M Krug
-existent local file ./__BOX__/Aerodynamic ` although the file exists and the link works in org. Cheers, Rainer Nicolas Goaziou m...@nicolasgoaziou.fr writes: Hello, The following library implements linting for Org syntax. The sole public function is `org-lint', which see. Internally

Re: [O] Specifying ATTR_LATEX document wide?

2015-06-03 Thread Rainer M Krug
Nicolas Goaziou m...@nicolasgoaziou.fr writes: Hello, Rainer M Krug rai...@krugs.de writes: In one document, I would like to make two changes how images are inserted in LaTeX / pdf documents, namely: 1) have no re-sizing, i.e. , | \includegraphics[]{./output

[O] Specifying ATTR_LATEX document wide?

2015-06-02 Thread Rainer M Krug
] for (2), but I have no idea how I can do (1). Additionally: Is there a way of setting this globally fir the actual document (document header?), so that I don't have to add this line to all my hundred images (OK - only about 70 - but still to many)? Thanks, Rainer -- Rainer M. Krug, PhD

Re: [O] org-use-property-inheritance not working?

2015-06-01 Thread Rainer M Krug
Nicolas Goaziou m...@nicolasgoaziou.fr writes: Rainer M Krug rai...@krugs.de writes: This means *a specific property* - or *any property*? In other words: can property A inherit from one level lower if property B is set in the current level? It can. That's good. Then I think

Re: [O] org-use-property-inheritance not working?

2015-05-31 Thread Rainer M Krug
Nicolas Goaziou m...@nicolasgoaziou.fr writes: Rainer M Krug rai...@krugs.de writes: OK - but this behavior is not influenced by the variable org-use-property-inheritance. So what is the meaning of the variable then? The variable is checked when calling `org-entry-get' with a non-nil

Re: [O] org-use-property-inheritance not working?

2015-05-30 Thread Rainer M Krug
Nicolas Goaziou m...@nicolasgoaziou.fr writes: Hello, Charles C. Berry ccbe...@ucsd.edu writes: On Fri, 29 May 2015, Rainer M Krug wrote: Is this to be expected? I always thought, that the properties are hierarchical, and that the ones from the lower levels / headers are used as well

Re: [O] [BUG] in last org in indentation of source blocks - confirmed with emacs -Q

2015-05-29 Thread Rainer M Krug
-indentation t) #+end_src , | | Org-mode version 8.3beta (release_8.3beta-1178-g317886 @ /Users/rainerkrug/.emacs.d/org-mode/lisp/) | GNU Emacs 24.5.1 (x86_64-apple-darwin14.3.0, Carbon Version 157 AppKit 1347.57) of 2015-04-13 on Rainers-MacBook-Pro.local ` Cheers, Rainer Rainer M Krug rai

Re: [O] [BUG] in last org in indentation of source blocks

2015-05-29 Thread Rainer M Krug
Nicolas Goaziou m...@nicolasgoaziou.fr writes: Hello, Rainer M Krug rai...@krugs.de writes: I reralised this morning that there eems to be a bug introduced in one of the last commits which causes repeted editing of source blocks to indent more each time the are edited (C-'). Original

Re: [O] [BUG] in last org in indentation of source blocks

2015-05-29 Thread Rainer M Krug
Titus von der Malsburg malsb...@posteo.de writes: On 2015-05-28 Thu 04:49, Rainer M Krug wrote: I reralised this morning that there eems to be a bug introduced in one of the last commits which causes repeted editing of source blocks to indent more each time the are edited (C-'). Original

Re: [O] [BUG] in last org in indentation of source blocks

2015-05-29 Thread Rainer M Krug
? If I set it to nil, I don't have the runway indentation, if I set it to non-nil, I have the runaway indentation. But I can't use nil, as I need the indentation for tangling of some files. Rainer hth, Tom -- Rainer M. Krug, PhD (Conservation Ecology, SUN), MSc (Conservation Biology, UCT

[O] org-use-property-inheritance not working?

2015-05-29 Thread Rainer M Krug
are used as well? Is this not the case, or id this a bug? With property inheritance I would have expected the inheritance, but it does not seem to make a difference? Thanks, Rainer -- Rainer M. Krug, PhD (Conservation Ecology, SUN), MSc (Conservation Biology, UCT), Dipl. Phys. (Germany

[O] How to end a :session?

2015-05-28 Thread Rainer M Krug
to execute in a throw away session which I would like to discard afterwards. So I am looking for something like #+CLOSE_SESSION Test which would then close the session *Test* Is something like this possible at the moment? Rainer -- Rainer M. Krug, PhD (Conservation Ecology, SUN), MSc (Conservation

Re: [O] How to end a :session?

2015-05-28 Thread Rainer M Krug
Andreas Leha andreas.l...@med.uni-goettingen.de writes: Hi Rainer, Hi Andreas, Rainer M Krug rai...@krugs.de writes: Christopher Witte ch...@witte.net.au writes: perhaps what you want is a named session, see http://orgmode.org/manual/session.html Sure - that's what I have. But how

[O] [BUG] in last org in indentation of source blocks

2015-05-28 Thread Rainer M Krug
| echo 2 | #+end_src ` After second C-' and back , | #+begin_src sh | echo 2 | #+end_src ` When C-', the indirect buffer has the same indentation as the source block, but when switching back, two more spaces are added. Cheers, Rainer -- Rainer M. Krug, PhD (Conservation Ecology

Re: [O] How to end a :session?

2015-05-28 Thread Rainer M Krug
session? On 28 May 2015 at 10:44, Rainer M Krug rai...@krugs.de wrote: Hi I can start a session as follow: --8---cut here---start-8--- #+begin_src R :session Test cat(Session Test\n) #+end_src --8---cut here---end

Re: [O] How to end a :session?

2015-05-28 Thread Rainer M Krug
Andreas Leha andreas.l...@med.uni-goettingen.de writes: Hi Rainer, Rainer M Krug rai...@krugs.de writes: Andreas Leha andreas.l...@med.uni-goettingen.de writes: Hi Rainer, Hi Andreas, Rainer M Krug rai...@krugs.de writes: Christopher Witte ch...@witte.net.au writes: perhaps what you

Re: [O] How to end a :session?

2015-05-28 Thread Rainer M Krug
Andreas Leha andreas.l...@med.uni-goettingen.de writes: Rainer M Krug rai...@krugs.de writes: Andreas Leha andreas.l...@med.uni-goettingen.de writes: Hi Rainer, Rainer M Krug rai...@krugs.de writes: Andreas Leha andreas.l...@med.uni-goettingen.de writes: Hi Rainer, Hi Andreas

[O] Confusing creation of frames and windows

2015-05-28 Thread M
I'm not sure where exactly my problem comes from, but I find it quite confusing how Emacs / org-mode creates new frames or does show something in the existing frame or window. Is there a tutorial or a best-practice setup to get it easy and intuitive? Kind regards Martin

[O] Include other sources (zotero, database) in org-mode search?

2015-05-28 Thread M
I'm currently building a large knowledge database with my org-mode notes. However there are other sources of knowledge like - my colleciton of Freeplane mindmaps (xml files) - my zotero Library Is it possible to let org-mode also index and search such sources so that I can search within all

Re: [O] Help needed on delegating some maintainance tasks

2015-05-24 Thread M
Von: Rasmus ras...@gmx.us Datum: Sat, 23 May 2015 11:31:57 +0200 An: emacs-orgmode@gnu.org Betreff: Re: [O] Help needed on delegating some maintainance tasks Hi, Bastien b...@gnu.org writes: 1. Watching the emacs-diffs mailing list and backport changes on Org in the local Org

Re: [O] [RFC] Org linting library

2015-05-24 Thread Rainer M Krug
Nicolas Goaziou m...@nicolasgoaziou.fr writes: Rainer M Krug rai...@krugs.de writes: Concerning ignoring: it would be nice to dynamically exclude certain types of messages - i.e. hiding them from the results of the linting. I don't think this is possible at the moment? I have literally

Re: [O] [RFC] Org linting library

2015-05-23 Thread Rainer M Krug
Nicolas Goaziou m...@nicolasgoaziou.fr writes: Rainer M Krug rai...@krugs.de writes: 1) not identifying header argument with + , | #+PROPERTY: header-args+ :tangle no ` results in , | 87 high Unknown header argument ` This should be fixed. Thanks. 2

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