[O] Babel-R TBLFM example

2014-06-25 Thread Shiyuan
Hi all, I am looking at the Babel R example in http://orgmode.org/worg/org-tutorials/org-R/org-R.html This short example show how to use code block in Org Tables. The example first makes an org-mode table, which I can follow and reproduce the result: #+name: tbl-example-data() #+begin_src R

[O] Babel-R vs. ESS

2014-06-25 Thread Shiyuan
Hi all, I am learning R and use Emacs to work with R. I googled around and I found two options: ESS and Org-R/Org-Babel. Babel speaks multiple languages( Any languages?-if we write some sort of parser, which I assume is not terribly difficult under Babel?). But if R is the primary language I

Re: [O] still seeing semi-regular lockups

2014-06-25 Thread Sebastien Vauban
Matt Lundin wrote: Eric Abrahamsen e...@ericabrahamsen.net writes: Nicolas Goaziou m...@nicolasgoaziou.fr writes: Eric Abrahamsen e...@ericabrahamsen.net writes: None of those three, I'm afraid! It was hanging on a variety of editing operations that, as far as I can tell, had little in

[O] Printing org file in color

2014-06-25 Thread Chris Henderson
I'd like to print out my org file in expanded mode in color. How do I do that? Thanks.

Re: [O] still seeing semi-regular lockups

2014-06-25 Thread Daimrod
Matt Lundin m...@imapmail.org writes: Eric Abrahamsen e...@ericabrahamsen.net writes: Nicolas Goaziou m...@nicolasgoaziou.fr writes: Hello, Eric Abrahamsen e...@ericabrahamsen.net writes: None of those three, I'm afraid! It was hanging on a variety of editing operations that, as far as

[O] Guide to writing custom skip functions for agenda views using org-agenda-skip-function

2014-06-25 Thread Arunabha Ghosh
Hi, Is there a guide on writing functions for implementing custom skip criteria for agenda items using org-agenda-skip-function ? I understand the basic premise behind org-agenda-skip-function but examples from other people's configs don't make much sense. What are the inputs to the skip

Re: [O] still seeing semi-regular lockups

2014-06-25 Thread Eric Abrahamsen
Daimrod daim...@gmail.com writes: Matt Lundin m...@imapmail.org writes: Eric Abrahamsen e...@ericabrahamsen.net writes: Nicolas Goaziou m...@nicolasgoaziou.fr writes: Hello, Eric Abrahamsen e...@ericabrahamsen.net writes: None of those three, I'm afraid! It was hanging on a variety of

Re: [O] Printing org file in color

2014-06-25 Thread Bastien
Hi Chris, Chris Henderson henders...@gmail.com writes: I'd like to print out my org file in expanded mode in color. How do I do that? I suggest M-x htmlize-buffer RET then printing from your web browser. -- Bastien

Re: [O] still seeing semi-regular lockups

2014-06-25 Thread Bastien
Hi Eric, Eric Abrahamsen e...@ericabrahamsen.net writes: I think the advice here was also to run Org uncompiled, as that produces a more useful backtrace, is that right? Yes, that's right -- generally, backtraces from compiled Org are mungled, while backtraces from an uncompiled Org are

Re: [O] Enabling another language in org-babel

2014-06-25 Thread Bastien
Hi Ista, Ista Zahn istaz...@gmail.com writes: The code is available at https://gist.github.com/izahn/5745dcf6dd07a6b05084 Looks good -- would you like to add it to the contrib/ directory in Org's repository? As for the original question, I think it would be a nice addition, let's put it

[O] How to deactivate key binding ! for org-agenda-toggle-deadlines?

2014-06-25 Thread Martin Beck
Hi, Id like to deactivate the key binding ! (which is bound to org-agenda-toggle-deadlines) in agendas, as I often hit it accidentally and then my deadlines have suddenly disappeared. Where is it defined and how can I deactivate it? Thanks a lot and sorry for the (I assume) trivial

Re: [O] impossible to have footnote touching verbatim

2014-06-25 Thread Bastien
Eric Schulte schulte.e...@gmail.com writes: Done. Thanks for this. I agree with Nicolas that small changes like this won't encourage a structural change by themselves, but they do not harm either, so let's not refrain from making them. -- Bastien

Re: [O] [PATCH] ob-shell: honor the specified shell for :session

2014-06-25 Thread Bastien
Hi Achim, thanks for this. Achim Gratz strom...@nexgo.de writes: In the case you mention above shell-file-name is used. Which means that if you change it in a running emacs session, then it will be picked up for shell blocks (as one might reasonably expect), whereas you would have had to

Re: [O] still seeing semi-regular lockups

2014-06-25 Thread Eric Abrahamsen
Bastien b...@gnu.org writes: Hi Eric, Eric Abrahamsen e...@ericabrahamsen.net writes: I think the advice here was also to run Org uncompiled, as that produces a more useful backtrace, is that right? Yes, that's right -- generally, backtraces from compiled Org are mungled, while

Re: [O] [PATCH] ob-java.el: Add `:var' variables import

2014-06-25 Thread Bastien
Hi Bart, Thanks for the patch. It is larger than what we can apply into Org's core without a copyright assignment. You can start the process of signing by filling this form: http://orgmode.org/cgit.cgi/org-mode.git/plain/request-assign-future.txt In the meantime, if someone who speaks java

Re: [O] Guide to writing custom skip functions for agenda views using org-agenda-skip-function

2014-06-25 Thread Sebastien Vauban
Arunabha Ghosh wrote: Is there a guide on writing functions for implementing custom skip criteria for agenda items using org-agenda-skip-function ? I understand the basic premise behind org-agenda-skip-function but examples from other people's configs don't make much sense. Here some

Re: [O] Invalid function

2014-06-25 Thread Bastien
Hi Thomas, t...@tsdye.com (Thomas S. Dye) writes: What's going on? Do you still see this errors? Worg suggests that the invalid function problem might be solved by running make clean and then make again, but doing this didn't help me. Can you try reinstalling by first remove local.mk or

Re: [O] eliminate creation of backup files in :publishing-directory

2014-06-25 Thread Bastien
regcl re...@channing.harvard.edu writes: Is there a way to stop org mode from creating backup files in the :publishing-directory? What are backup files exactly? There is `org-publish-after-publishing-hook' which may help cleaning up stuff if needed. -- Bastien

Re: [O] :exclude sub folder in org-publish

2014-06-25 Thread Bastien
regcl re...@channing.harvard.edu writes: Or, maybe there something obvious I am missing? Please tell us what you wanted to do, show us what you tried by sharing parts of your configuration, and we'll be able to help. -- Bastien

Re: [O] publishing to gihub gh-pages branch

2014-06-25 Thread Bastien
regcl re...@channing.harvard.edu writes: Does anyone have suggestions regarding how to automate HTML publishing to the gh-pages branch of a github repo? There are several solutions here. What did you try? -- Bastien

Re: [O] org-ref in action

2014-06-25 Thread Bastien
Hi John, thanks for working on this! The demo is impressive. I've not explored or tested org-ref.el directly, but my feeling is that there are some neat features that could sneak into Org's core, like for example multiple targets for the same custom link, sorting of those targets, etc. I'll

Re: [O] How to deactivate key binding ! for org-agenda-toggle-deadlines?

2014-06-25 Thread Bastien
Hi Martin, Martin Beck elwood...@web.de writes: I'd like to deactivate the key binding ! (which is bound to org-agenda-toggle-deadlines) in agendas, (add-hook 'org-agenda-mode-hook (lambda () (local-unset-key !))) -- Bastien

Re: [O] Tidy automatically HTML files

2014-06-25 Thread Bastien
Sebastien Vauban sva-news-D0wtAvR13HarG/idocf...@public.gmane.org writes: Though, when executed interactively on an HTML buffer, it does work as expected. I don't get what's wrong... Maybe one of you can have an idea? What's wrong is that (with-output-to-string (shell-command-on-region

Re: [O] Section of Org manual on images in latex export

2014-06-25 Thread Bastien
Hi Christopher, Nick Dokos ndo...@gmail.com writes: Christopher Witte ch...@witte.net.au writes: ps. I tried to find out if I could make those changes myself, but after much clicking and searching, I could only find: http://orgmode.org/worg/org-contribute.html but that doesn't say anything

Re: [O] Link to Top Most Heading

2014-06-25 Thread Bastien
Hi Esben Esben Stien b...@esben-stien.name writes: I'm trying to figure out how I can get a link to the top most heading without actually moving point up there and doing C-c C-l. (defun my-org-store-link-to-top-level-heading () (interactive) (save-excursion (org-up-heading-all 10)

Re: [O] Babel-R vs. ESS

2014-06-25 Thread Thorsten Jolitz
Shiyuan gshy2...@gmail.com writes: Hi all, I am learning R and use Emacs to work with R. I googled around and I found two options: ESS and Org-R/Org-Babel. Babel speaks multiple languages( Any languages?-if we write some sort of parser, which I assume is not terribly difficult under

Re: [O] [PATCH] ob-java.el: Add `:var' variables import

2014-06-25 Thread Bart Post
Hi Bastien, Thanks for your reply! I already started the copyright assignment process, for now I need to wait for a disclaimer form from my employer, but I will notify you as soon as there is progress. While discussing the patch with a roommate, we came to the conclusion that a java class which

Re: [O] Link to Top Most Heading

2014-06-25 Thread Esben Stien
Bastien b...@gnu.org writes: (defun my-org-store-link-to-top-level-heading () (interactive) (save-excursion (org-up-heading-all 10) (call-interactively 'org-store-link))) Perfect. So simple with org-up-heading-all. Didn't find that. Thanks a lot. Saves me so much time;) --

[O] Automatically Increasing Priority

2014-06-25 Thread Esben Stien
Does there exist such a concept of automatically increasing priority after a while? Or also decreasing priority. I find that I prioritize stuff and never get to it because I got so many other things with higher priority. Maybe I'm wrong, but automatically increasing priority after a while seems

[O] Rebuilding agenda causes error

2014-06-25 Thread Renger van Nieuwkoop
Hi As soon as I want to rebuild an agenda view, I get the following error Rebuilding agenda buffer... cond: Variable binding depth exceeds max-specpdl-size Any idea what I am doing wrong (I don't know if it started after updating to the last version of Org-Mode). Using Emacs 24.3.1 Thanks Renger

[O] [Latex] Don't push code blocks to end of document (was: Source blocks with captions)

2014-06-25 Thread Alexander Baier
On 2014-06-24 14:31 Alexander Baier wrote: [...] With this code: * Test #+CAPTION: Test #+BEGIN_SRC java // some code #+END_SRC I get a figure with a caption when exporting to LaTeX: \section{Test} \label{sec-1} \begin{figure}[H] \begin{verbatim} // some code

Re: [O] [Latex] Don't push code blocks to end of document

2014-06-25 Thread Alexander Baier
Hello again, this is another follow up, I am sorry for so much noise. On 2014-06-25 13:20 Alexander Baier wrote: On 2014-06-24 14:31 Alexander Baier wrote: [...] With this code: * Test #+CAPTION: Test #+BEGIN_SRC java // some code #+END_SRC I get a figure with a caption

Re: [O] Invalid function

2014-06-25 Thread Achim Gratz
Bastien bzg at gnu.org writes: Can you try reinstalling by first remove local.mk or regenerating it with ~$ make config ? The local.mk is never touched if one exists, make config simply shows you the most important settings there. In any case, the error was most likely caused by an incorrect

Re: [O] Enabling another language in org-babel

2014-06-25 Thread Ista Zahn
Hi Bastien, I don't know if this is ready for contrib yet (though I don't object if you think it is). I'm not sure what quality standards exist for contrib, but this is really quick and dirty; it would be nice to at least implement graphics support. On the other hand its better than nothing, so

Re: [O] still seeing semi-regular lockups

2014-06-25 Thread Matt Lundin
Daimrod daim...@gmail.com writes: Matt Lundin m...@imapmail.org writes: The freezes are very difficult to replicate reliably. When they happen, emacs is unresponsive and can only be killed from the outside. Any tips on how to debug this would be greatly appreciated. See my previous post:

[O] Attaching hook to subtree

2014-06-25 Thread Fabrice Popineau
Hi list, I wonder if someone has already tried the following. It could be useful to trigger some action whenever a subtree is modified. This would require to attach a hook to the subtree, which can be done using a property drawer. The real problem is how to (efficiently) track the fact that some

Re: [O] Babel-R vs. ESS

2014-06-25 Thread Ista Zahn
Hi Shiyuan, On Wed, Jun 25, 2014 at 3:08 AM, Shiyuan gshy2...@gmail.com wrote: Hi all, I am learning R and use Emacs to work with R. I googled around and I found two options: ESS and Org-R/Org-Babel. Org-Babel and ESS are not really alternatives; in fact the complement each other nicely.

Re: [O] unattractive list spacing in ox-html export

2014-06-25 Thread Rick Frankel
On 2014-06-24 09:24, Nicolas Goaziou wrote: Hello, Achim Gratz strom...@nexgo.de writes: You can disagree all you want, that doesn't make the underlying problem go away. The reason for the unattractive spacing is that list items, while conceptually paragraphs, do not have additional spacing

Re: [O] Babel-R vs. ESS

2014-06-25 Thread Erik Iverson
+1 for Ista. Use both. I tend to write a lot of R code for reading in data, and then merging it with other sources and cleaning it. For my purposes, I usually do those activities in a .R file (so using ESS in Emacs), and output a 'tidy' data.frame ready for analysis. Then I might use org-mode to

[O] [PATCH] org-taskjuggler.el - add valid project attributes

2014-06-25 Thread Thorsten Jolitz
From bc21dacd0bb400c5bb92acff9bbf2d00560f1c92 Mon Sep 17 00:00:00 2001 From: tj t...@data-driven.de Date: Wed, 25 Jun 2014 16:27:42 +0200 Subject: [PATCH] Taskjuggler: Add valid project attributes * ox-taskjuggler.el (org-taskjuggler--build-project): Insert all valid attributes from project.

Re: [O] ox taskjuggler issues: (1) unable to set 'timingresolution' (2) taskjuggler_resource not found (3) property/attribute aliases

2014-06-25 Thread Thorsten Jolitz
Nick Garber nick.gar...@gmail.com writes: Hello, In exploring the use of OrgMode for advanced project planning I've run across a few questions/problems with the taskjuggler exporter that I'd like to raise. (1) unable to set 'timingresolution' My project contains some short tasks, such as

Re: [O] org-ref in action

2014-06-25 Thread Vikas Rawal
John, Thanks for a very interesting tutorial. I was trying to load org-ref.el, but get the following error: Debugger entered--Lisp error: (wrong-type-argument consp nil) setcar(nil ((87 . textcite:%l) (122 . newcite:%l))) (let* ((c (nthcdr 2 (assoc (quote org)

Re: [O] Invalid function

2014-06-25 Thread Thomas S. Dye
Bastien b...@gnu.org writes: Hi Thomas, t...@tsdye.com (Thomas S. Dye) writes: What's going on? Do you still see this errors? No, the errors are gone. Thanks for following up. All the best, Tom -- T.S. Dye Colleagues, Archaeologists 735 Bishop St, Suite 315, Honolulu, HI 96813 Tel:

Re: [O] Automatically Increasing Priority

2014-06-25 Thread Richard Lawrence
Hi Esben, Esben Stien b...@esben-stien.name writes: Does there exist such a concept of automatically increasing priority after a while? I'm not aware of any way of automatically changing the priority of a headline, though if you really need this, it looks like it would be fairly simple to do

Re: [O] Babel-R vs. ESS

2014-06-25 Thread Joost Helberg
Shiyuan, Babel-R uses ESS (session: parameter) for R-evaluation and interactive development/debugging. Babel-R is more than sufficient for publications with mixed text and graphs. regards, Joost Shiyuan == Shiyuan gshy2...@gmail.com writes: From: Shiyuan gshy2...@gmail.com To:

[O] Massive tangle speedup in the 8.2.7a release

2014-06-25 Thread Grant Rettke
Hi, Just want to share what I experienced: Tangle time sped up by 50%! Thank you for that. Kind regards, Grant Rettke | ACM, ASA, FSF, IEEE, SIAM g...@wisdomandwonder.com | http://www.wisdomandwonder.com/ “Wisdom begins in wonder.” --Socrates ((λ (x) (x x)) (λ (x) (x x))) “Life has become

Re: [O] MobileOrg

2014-06-25 Thread Aric Gregson
Sean Escriva sean.escr...@gmail.com writes: org-mobile.el which is responsible for the sync has a custom var defined called 'org-mobile-files-exclude-regexp' which should exlude files that match. OK. I've tried to play with this, but clearly my understanding of emacs and regex is inadequate

Re: [O] MobileOrg

2014-06-25 Thread Nick Dokos
Aric Gregson aorc...@mac.com writes: Sean Escriva sean.escr...@gmail.com writes: org-mobile.el which is responsible for the sync has a custom var defined called 'org-mobile-files-exclude-regexp' which should exlude files that match. OK. I've tried to play with this, but clearly my

[O] BUG variable expansion with table

2014-06-25 Thread Rainer M Krug
Hi there seems to be a bug in the table transfer. The org file below evaluates as shown, i.e. the TABLE_BLOCK contains one column less then it should as the first column is discarded and the second one used as the row names. This only occurs when there is a second variable defined. When the

Re: [O] Linked tasks

2014-06-25 Thread Pete Ley
it seems to me that it's more 'depend' in the sense of 'this task has to be done for this other task to be doable'. IIRC, the TRIGGER property in org-depend.el allows you to change the state of another tree when the current one is marked done. I imagine you could use it to have a clone task in

Re: [O] org-ref in action

2014-06-25 Thread Eric Schulte
John Kitchin jkitc...@andrew.cmu.edu writes: Hello everyone, org-ref has basically stabilized. You can get the latest code at https://github.com/jkitchin/jmax/blob/master/org-ref.org. I made a little screen capture video here to show you what it does:

[O] :header-args: over several lines?

2014-06-25 Thread Rainer M Krug
Hi I want to add many variables to a subtree. But it seems that :header-args: only allows one line - is this true? In my case, this line would be exceedingly long and very difficult to debug. Is there a way of having :header-args: span several lines (like var+)? Thanks, Rainer -- Rainer M.

[O] Tangling an org table to tab delimited format?

2014-06-25 Thread Rainer M Krug
I guess it is not possible, but I might be missing something: is it possible top tangle an org table into a tab delimited file? Together with some R code to be tangled into the ./R directory, I would like to tangle some tables containing the parameter into the ./data/ directory. I could

[O] Around-advice on org-foo-export function?

2014-06-25 Thread Thorsten Jolitz
Hi List, sometimes I want to call one of the org-foo-export functions with a different environment, i.e. with different values for the backend-specific customizable export variables, e.g. , | (let ((org-taskjuggler-default-project-duration 1)) ; default is 280 |

Re: [O] :header-args: over several lines?

2014-06-25 Thread Aaron Ecay
2014ko ekainak 25an, Rainer M Krug-ek idatzi zuen: Hi I want to add many variables to a subtree. But it seems that :header-args: only allows one line - is this true? In my case, this line would be exceedingly long and very difficult to debug. Is there a way of having :header-args: span

Re: [O] org-ref in action

2014-06-25 Thread Grant Rettke
John: Beautiful, thanks! Eric: My goodness, that 8 minute video sums up what was not obvious to many even after wantingly browsing the documentation on it. Thanks! Grant Rettke | ACM, ASA, FSF, IEEE, SIAM g...@wisdomandwonder.com | http://www.wisdomandwonder.com/ “Wisdom begins in wonder.”

Re: [O] org-ref in action

2014-06-25 Thread Matt Lundin
Eric Schulte schulte.e...@gmail.com writes: This is a lot of useful functionality, and very nicely presented. Did you happen to try the built in bibtex support in Org-mode core and contrib? And if so, is there a reason that you implemented this all independently? I think part of the

[O] /some 'text'/

2014-06-25 Thread Alan L Tyree
I have the following expression in my manuscript: /Caltex Oil (Aust) Pty Ltd v The Dredge 'Willemstad'/ [1976] HCA 65 I want the /.../ part to be italicised on export, but (of course) it isn't. The variable org-emphasis-regexp-components was customizable before 8.0. Is there some workaround

Re: [O] still seeing semi-regular lockups

2014-06-25 Thread Matt Lundin
Daimrod daim...@gmail.com writes: Matt Lundin m...@imapmail.org writes: With the latest git, I've experienced three lock-ups/freezes this evening when a) archiving a subtree to a file, b) changing a todo state with repeating timestamp, and 3) calling C-c C-c in an org-capture buffer. (I

Re: [O] still seeing semi-regular lockups

2014-06-25 Thread Matt Lundin
Matt Lundin m...@imapmail.org writes: With killall -USR2 emacs, the following backtrace popped up, which highlights flyspell as the culrpit. ~~~ And, of course, I had flyspell turned off when writing this email. :) Matt

[O] refile affects kill ring

2014-06-25 Thread Samuel Wales
in recent maint, it seems that refiling an entry will put that entry into the kill ring. perhaps it should leave the kill ring intact?