Re: [Fink-users] failed to install apbs

2009-08-01 Thread Alan
Hi there, Well, I found this: find /sw/src/fink.build | grep site /sw/src/fink.build/apbs-1.1.0-2/apbs-1.1.0-source/contrib/opal/ZSI/@INSTALL_DIR45643{prefix}/lib/python2.6/site-packages Apparently, at least IMHO, variable @INSTALL_DIR@ is not correctly being replaced in apbs.info: sed

Re: [Fink-users] failed to install apbs

2009-08-01 Thread Alexander Hansen
-BEGIN PGP SIGNED MESSAGE- Hash: SHA1 Alan wrote: Hi there, Well, I found this: find /sw/src/fink.build | grep site /sw/src/fink.build/apbs-1.1.0-2/apbs-1.1.0-source/contrib/opal/ZSI/@INSTALL_DIR45643{prefix}/lib/python2.6/site-packages Apparently, at least IMHO, variable

Re: [Fink-users] failed to install apbs

2009-08-01 Thread Alan
Dear Alexander, When you did a fresh install, the first package you installed was fink install apbs and the lots of dependences (including python 2.6) came together, right? Looking at the error and log I have the suspicion that if I install apbs and then during the process python 2.6 is build I

Re: [Fink-users] failed to install apbs

2009-08-01 Thread William G. Scott
Hi Alan: It looks like there are multiple problems with this package and I think I am going to throw the vile thing into the fire and start over. I can't give you my debians because they were built for /sw64 instead of /sw. If you need apbs in a hurry for a pymol plugin, you can grab David

Re: [Fink-users] failed to install apbs

2009-08-01 Thread William G. Scott
It turns out there is a typo on line 38 of the patch file +sitepk...@install_dir$${prefix}/lib/python${PY_VERSION}/site-packages should be +sitepk...@install_dir@${prefix}/lib/python${PY_VERSION}/site-packages This corrects the problem you found. However there are some additional problems in

[Fink-users] Error building gcc42-shlibs

2009-08-01 Thread Mike Zanker
This is what I'm getting: bzip2 -dc /sw/src/gcc-4.2.4.tar.bz2 | /sw/bin/tar -xf - --no-same-owner --no-same-permissions [ -r /sw/fink/dists/unstable/main/finkinfo/languages/gcc42.patch ] patch -p1 /sw/fink/dists/unstable/main/finkinfo/languages/gcc42.patch patching file

Re: [Fink-users] Error building gcc42-shlibs

2009-08-01 Thread monipol
On 01/08/2009, at 16:24, Mike Zanker wrote: This is what I'm getting: bzip2 -dc /sw/src/gcc-4.2.4.tar.bz2 | /sw/bin/tar -xf - --no-same- owner --no-same-permissions [ -r /sw/fink/dists/unstable/main/finkinfo/languages/gcc42.patch ] patch -p1

Re: [Fink-users] Error building gcc42-shlibs

2009-08-01 Thread Jack Howarth
On Sat, Aug 01, 2009 at 05:52:38PM -0300, monipol wrote: On 01/08/2009, at 16:24, Mike Zanker wrote: This is what I'm getting: bzip2 -dc /sw/src/gcc-4.2.4.tar.bz2 | /sw/bin/tar -xf - --no-same- owner --no-same-permissions [ -r /sw/fink/dists/unstable/main/finkinfo/languages/gcc42.patch ]

Re: [Fink-users] Error building gcc42-shlibs

2009-08-01 Thread Jack Howarth
On Sat, Aug 01, 2009 at 05:52:38PM -0300, monipol wrote: On 01/08/2009, at 16:24, Mike Zanker wrote: This is what I'm getting: bzip2 -dc /sw/src/gcc-4.2.4.tar.bz2 | /sw/bin/tar -xf - --no-same- owner --no-same-permissions [ -r /sw/fink/dists/unstable/main/finkinfo/languages/gcc42.patch ]

Re: [Fink-users] Error building gcc42-shlibs

2009-08-01 Thread monipol
On 01/08/2009, at 18:08, Jack Howarth wrote: On Sat, Aug 01, 2009 at 05:52:38PM -0300, monipol wrote: On 01/08/2009, at 16:24, Mike Zanker wrote: This is what I'm getting: bzip2 -dc /sw/src/gcc-4.2.4.tar.bz2 | /sw/bin/tar -xf - --no-same- owner --no-same-permissions [ -r

Re: [Fink-users] Error building gcc42-shlibs

2009-08-01 Thread monipol
On 01/08/2009, at 18:14, Jack Howarth wrote: On Sat, Aug 01, 2009 at 05:52:38PM -0300, monipol wrote: On 01/08/2009, at 16:24, Mike Zanker wrote: This is what I'm getting: bzip2 -dc /sw/src/gcc-4.2.4.tar.bz2 | /sw/bin/tar -xf - --no-same- owner --no-same-permissions [ -r

Re: [Fink-users] Error building gcc42-shlibs

2009-08-01 Thread Mike Zanker
On 1/8/09 22:08, Jack Howarth wrote: Are both of you running Xcode 3.1b3 on Leopard? I did my test build on a dual G5 running 10.5.7 with Xcode 3.1.3 without issues. What does... which autoheader and /usr/bin/autoheader -V return on your machines? Xcode 3.1.3 has... autoheader

Re: [Fink-users] failed to install apbs

2009-08-01 Thread Martin Costabel
William G. Scott wrote: It turns out there is a typo on line 38 of the patch file +sitepk...@install_dir$${prefix}/lib/python${PY_VERSION}/site-packages should be +sitepk...@install_dir@${prefix}/lib/python${PY_VERSION}/site-packages This corrects the problem you found. However

Re: [Fink-users] failed to install apbs

2009-08-01 Thread William G. Scott
On Aug 1, 2009, at 3:48 PM, Martin Costabel wrote: William G. Scott wrote: It turns out there is a typo on line 38 of the patch file +sitepk...@install_dir$${prefix}/lib/python${PY_VERSION}/site- packages should be +sitepk...@install_dir@${prefix}/lib/python${PY_VERSION}/site- packages

[Fink-users] [SPAM] gcc42-4.2.4 build failure

2009-08-01 Thread Jean-François Mertens
Build of gcc42-4.2.4 failed right at the start with : cd boehm-gc autoheader -I .. -I ../config configure.ac:52: error: m4_copy: won't overwrite defined macro: _AC_ARG_VAR_PRECIOUS configure.ac:52: the top level autom4te-2.64: /sw/bin/m4 failed with exit status: 1 This is with fink's

Re: [Fink-users] Error building gcc42-shlibs

2009-08-01 Thread monipol
On 01/08/2009, at 18:36, monipol wrote: On 01/08/2009, at 18:08, Jack Howarth wrote: On Sat, Aug 01, 2009 at 05:52:38PM -0300, monipol wrote: On 01/08/2009, at 16:24, Mike Zanker wrote: This is what I'm getting: bzip2 -dc /sw/src/gcc-4.2.4.tar.bz2 | /sw/bin/tar -xf - --no-same- owner

Re: [Fink-users] Error building gcc42-shlibs

2009-08-01 Thread Jack Howarth
On Sat, Aug 01, 2009 at 08:45:49PM -0300, monipol wrote: On 01/08/2009, at 18:36, monipol wrote: On 01/08/2009, at 18:08, Jack Howarth wrote: On Sat, Aug 01, 2009 at 05:52:38PM -0300, monipol wrote: On 01/08/2009, at 16:24, Mike Zanker wrote: This is what I'm getting: bzip2 -dc

Re: [Fink-users] Error building gcc42-shlibs

2009-08-01 Thread Martin Costabel
monipol wrote: On 01/08/2009, at 18:14, Jack Howarth wrote: [] Could you grab a copy of the older gcc42 packaging from... http://fink.cvs.sourceforge.net/viewvc/*checkout*/fink/dists/10.4/unstable/main/finkinfo/languages/gcc42.info?revision=1.10 and try replacing the copy in

Re: [Fink-users] failed to install apbs

2009-08-01 Thread William Scott
Hopefully it will work now. (revision 4) On Sat, August 1, 2009 3:48 pm, Martin Costabel wrote: William G. Scott wrote: It turns out there is a typo on line 38 of the patch file +sitepk...@install_dir$${prefix}/lib/python${PY_VERSION}/site-packages should be

Re: [Fink-users] Error building gcc42-shlibs

2009-08-01 Thread Peter O'Gorman
Martin Costabel wrote: I guess pogma needs to add another patch for autoconf-2.64. Or Fink needs to go back to autoconf-2.63. Well, gcc requires the use of specific, non-vendor patched versions of the autotools, the version of autoconf currently required is 2.59. Using any other version to

Re: [Fink-users] Error building gcc42-shlibs

2009-08-01 Thread Jack Howarth
On Sat, Aug 01, 2009 at 09:00:07PM -0500, Peter O'Gorman wrote: Martin Costabel wrote: I guess pogma needs to add another patch for autoconf-2.64. Or Fink needs to go back to autoconf-2.63. Well, gcc requires the use of specific, non-vendor patched versions of the autotools, the